Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FOXN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 8456 forkhead box N1 chr17 + 26845958 - 26851458 26850958 V_WHN_B_M00332 Transcription Factor Binding Sites   Download all TFBS in the FOXN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 26854536 26854551 6.0E-06 GGGAATAGTTAATGGG 16 TBX21_TBX_full_dimeric_16_1 SELEX + 26852241 26852256 9.0E-06 TGTGTGACTTCTCACT 16 TBX21_TBX_full_dimeric_16_1 SELEX - 26852241 26852256 1.0E-06 AGTGAGAAGTCACACA 16 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 26855390 26855407 3.0E-06 TGAGGTCATTTAAGGTCT 18 FOXL1_forkhead_full_dimeric_13_1 SELEX - 26852255 26852267 1.0E-06 TTTAAACAAACAG 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 26852301 26852309 2.0E-06 TATGCAAAT 9 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 26855390 26855406 1.0E-06 GAGGTCATTTAAGGTCT 17 POU2F3_POU_DBD_monomeric_9_1 SELEX + 26852301 26852309 2.0E-06 TATGCAAAT 9 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 26855390 26855406 1.0E-06 GAGGTCATTTAAGGTCT 17 EWSR1-FLI1_MA0149.1 JASPAR + 26855163 26855180 9.0E-06 GCCAGGGAGGAAGGCAAG 18 POU1F1_POU_DBD_monomeric_14_1 SELEX + 26852299 26852312 1.0E-06 CATATGCAAATGTG 14 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 26855390 26855407 2.0E-06 TGAGGTCATTTAAGGTCT 18 GATA5_GATA_DBD_monomeric_8_1 SELEX + 26854619 26854626 7.0E-06 AGATAAGA 8 GCM1_GCM_full_dimeric_16_1 SELEX - 26846476 26846491 1.0E-06 ATATGGGTACCCACAA 16 RUNX3_RUNX_DBD_dimeric_16_1 SELEX - 26846469 26846484 3.0E-06 TACCCACAACCCACAA 16 POU2F2_POU_DBD_monomeric_11_1 SELEX + 26852300 26852310 0.0E+00 ATATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 26852301 26852309 2.0E-06 TATGCAAAT 9 GATA4_GATA_DBD_monomeric_8_1 SELEX + 26854619 26854626 7.0E-06 AGATAAGA 8 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 26852301 26852309 2.0E-06 TATGCAAAT 9 Klf4_MA0039.2 JASPAR - 26855462 26855471 2.0E-06 TGGGTGTGGC 10 POU3F3_POU_DBD_monomeric_13_1 SELEX + 26852299 26852311 3.0E-06 CATATGCAAATGT 13 RUNX2_RUNX_DBD_dimeric_16_1 SELEX - 26846469 26846484 1.0E-05 TACCCACAACCCACAA 16 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 26855390 26855406 8.0E-06 GAGGTCATTTAAGGTCT 17 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 26852256 26852266 2.0E-06 TTAAACAAACA 11 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX - 26855390 26855406 1.0E-06 GAGGTCATTTAAGGTCT 17 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 26854950 26854961 1.0E-05 TTGCCCCACACT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 26852256 26852266 1.0E-06 TTAAACAAACA 11 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 26855390 26855406 2.0E-06 GAGGTCATTTAAGGTCT 17 Gata1_MA0035.2 JASPAR + 26854617 26854627 3.0E-06 TCAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX + 26854619 26854626 7.0E-06 AGATAAGA 8 NRL_bZIP_DBD_monomeric_11_1 SELEX + 26846574 26846584 3.0E-06 TATTTGCTGAT 11 POU3F1_POU_DBD_monomeric_12_1 SELEX + 26852300 26852311 1.0E-06 ATATGCAAATGT 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 26852324 26852331 1.0E-05 ACATTCCA 8 MGA_TBX_DBD_dimeric_18_1 SELEX + 26852240 26852257 9.0E-06 GTGTGTGACTTCTCACTG 18 MTF1_C2H2_DBD_monomeric_14_1 SELEX + 26855122 26855135 6.0E-06 TCTGCACCCGGCTC 14 POU2F1_POU_DBD_monomeric_12_1 SELEX + 26852299 26852310 1.0E-06 CATATGCAAATG 12 PLAG1_MA0163.1 JASPAR + 26852167 26852180 7.0E-06 GGGGGCAAGTGGGG 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 26854950 26854961 5.0E-06 TTGCCCCACACT 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 26852300 26852311 0.0E+00 ATATGCAAATGT 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 26852256 26852268 0.0E+00 ATTTAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 26846347 26846359 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 26846348 26846360 6.0E-06 AAAAAAAAAAAAA 13 RREB1_MA0073.1 JASPAR - 26846462 26846481 9.0E-06 CCACAACCCACAACCACCTG 20 RREB1_MA0073.1 JASPAR - 26854430 26854449 6.0E-06 CCACACACCACATACACACA 20 RREB1_MA0073.1 JASPAR - 26854433 26854452 2.0E-06 CACCCACACACCACATACAC 20 TEAD1_MA0090.1 JASPAR + 26852323 26852334 2.0E-06 CACATTCCAGAG 12 ZIC1_C2H2_full_monomeric_14_1 SELEX - 26854523 26854536 5.0E-06 CGCCACCTGCTGTG 14 V_MEQ_01_M02049 TRANSFAC + 26852319 26852327 4.0E-06 AAAACACAT 9 V_HNF3B_01_M00131 TRANSFAC + 26852251 26852265 2.0E-06 CTCACTGTTTGTTTA 15 V_KLF15_Q2_M01714 TRANSFAC + 26852136 26852149 5.0E-06 GGGGAGGGGTGTTG 14 V_POU3F3_01_M03090 TRANSFAC - 26852296 26852312 1.0E-05 CACATTTGCATATGGGT 17 V_GATA1_Q6_M02004 TRANSFAC + 26854481 26854495 3.0E-06 TAGGCAGATAAGGAC 15 V_GATA1_Q6_M02004 TRANSFAC + 26854614 26854628 5.0E-06 GCCTCAGATAAGAGT 15 V_HMGIY_Q3_M01010 TRANSFAC - 26846348 26846362 1.0E-05 ACTTTTTTTTTTTTT 15 V_MTF1_Q4_M00650 TRANSFAC + 26855122 26855135 1.0E-06 TCTGCACCCGGCTC 14 V_OCT1_Q5_01_M00930 TRANSFAC - 26852301 26852311 4.0E-06 ACATTTGCATA 11 V_OCTAMER_01_M01324 TRANSFAC - 26852296 26852312 1.0E-05 CACATTTGCATATGGGT 17 V_OCT1_01_M00135 TRANSFAC + 26852296 26852314 0.0E+00 ACCCATATGCAAATGTGAC 19 V_POU2F3_01_M01476 TRANSFAC + 26852298 26852313 1.0E-06 CCATATGCAAATGTGA 16 V_YY1_Q6_M00793 TRANSFAC - 26855455 26855463 7.0E-06 GCCATCTTG 9 V_P53_DECAMER_Q2_M00761 TRANSFAC - 26854581 26854590 4.0E-06 AGACAAGCCC 10 V_HNF3_Q6_01_M01012 TRANSFAC + 26852251 26852268 2.0E-06 CTCACTGTTTGTTTAAAT 18 V_GATA_C_M00203 TRANSFAC + 26854486 26854496 3.0E-06 AGATAAGGACA 11 V_GKLF_02_M01588 TRANSFAC + 26855462 26855473 4.0E-06 GCCACACCCAGG 12 V_OCT_C_M00210 TRANSFAC - 26852300 26852312 0.0E+00 CACATTTGCATAT 13 V_NERF_Q2_M00531 TRANSFAC + 26846452 26846469 1.0E-06 GTCCAGGAAGCAGGTGGT 18 V_E2A_Q2_M00804 TRANSFAC - 26846455 26846468 3.0E-06 CCACCTGCTTCCTG 14 V_COUPTF_Q6_M01036 TRANSFAC + 26854501 26854523 7.0E-06 GGCCCTGAACCTTAGGCTTGGCC 23 V_COUPTF_Q6_M01036 TRANSFAC + 26855424 26855446 5.0E-06 TTTGATGGCCTCTGCAGTCTGCA 23 V_TCFAP2E_04_M02926 TRANSFAC + 26846342 26846355 2.0E-06 GTCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 26846344 26846357 2.0E-06 CTCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 26846345 26846358 3.0E-06 TCAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 26846346 26846359 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 26846347 26846360 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 26846348 26846361 4.0E-06 AAAAAAAAAAAAAG 14 V_ELF4_04_M02850 TRANSFAC + 26846342 26846358 1.0E-06 GTCTCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 26846343 26846359 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 26846344 26846360 3.0E-06 CTCAAAAAAAAAAAAAA 17 V_ZFP105_03_M02827 TRANSFAC + 26846344 26846358 1.0E-06 CTCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 26846345 26846359 2.0E-06 TCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 26846346 26846360 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 26846347 26846361 0.0E+00 AAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 26846348 26846362 2.0E-06 AAAAAAAAAAAAAGT 15 V_ZFP105_03_M02827 TRANSFAC + 26846349 26846363 1.0E-06 AAAAAAAAAAAAGTG 15 V_ZFP410_03_M02832 TRANSFAC + 26854961 26854977 5.0E-06 TGGCATGGGATGGAGGA 17 V_HNF3G_Q4_M02015 TRANSFAC + 26852256 26852263 7.0E-06 TGTTTGTT 8 V_NFAT_Q6_M00302 TRANSFAC + 26846364 26846375 8.0E-06 CAGAGGAAACTT 12 V_E12_Q6_M00693 TRANSFAC + 26854526 26854536 6.0E-06 AGCAGGTGGCG 11 V_HNF3_Q6_M00791 TRANSFAC - 26852254 26852266 0.0E+00 TTAAACAAACAGT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 26852256 26852266 1.0E-06 TGTTTGTTTAA 11 V_OCT1_04_M00138 TRANSFAC + 26852294 26852316 8.0E-06 ACACCCATATGCAAATGTGACAA 23 V_EVI1_Q3_M02002 TRANSFAC - 26852312 26852320 6.0E-06 TTTCTTGTC 9 V_GR_Q6_M00192 TRANSFAC - 26852363 26852381 1.0E-05 GGGAAAAACTGTGTACTAT 19 V_GATA1_09_M02254 TRANSFAC + 26854617 26854627 3.0E-06 TCAGATAAGAG 11 V_TEF_01_M01305 TRANSFAC + 26852323 26852334 2.0E-06 CACATTCCAGAG 12 V_RREB1_01_M00257 TRANSFAC - 26846468 26846481 6.0E-06 CCACAACCCACAAC 14 V_RREB1_01_M00257 TRANSFAC - 26854438 26854451 9.0E-06 ACCCACACACCACA 14 V_HFH1_01_M00129 TRANSFAC + 26852253 26852264 1.0E-05 CACTGTTTGTTT 12 V_OCT1_B_M00342 TRANSFAC + 26852301 26852310 2.0E-06 TATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC - 26852301 26852311 2.0E-06 ACATTTGCATA 11 V_MAF_Q6_01_M00983 TRANSFAC + 26852222 26852232 4.0E-06 TCCTGAGTCAG 11 V_YY1_03_M02044 TRANSFAC - 26855455 26855466 9.0E-06 GTGGCCATCTTG 12 V_MTF1_06_M02882 TRANSFAC + 26846346 26846359 8.0E-06 CAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 26846347 26846360 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 26846348 26846361 1.0E-06 AAAAAAAAAAAAAG 14 V_FAC1_01_M00456 TRANSFAC + 26846347 26846360 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 26846470 26846483 8.0E-06 ACCCACAACCCACA 14 V_FAC1_01_M00456 TRANSFAC + 26852315 26852328 3.0E-06 AAGAAAAACACATT 14 V_TAL1_01_M01591 TRANSFAC - 26854484 26854496 5.0E-06 TGTCCTTATCTGC 13 V_MYOD_Q6_01_M00929 TRANSFAC + 26854522 26854539 4.0E-06 CCACAGCAGGTGGCGGGA 18 V_OCT2_01_M01368 TRANSFAC + 26852298 26852313 0.0E+00 CCATATGCAAATGTGA 16 V_GATA1_04_M00128 TRANSFAC + 26854483 26854495 6.0E-06 GGCAGATAAGGAC 13 V_ZBTB3_03_M02825 TRANSFAC + 26846378 26846394 4.0E-06 GAGTGCACTGCAGATGT 17 V_FOXL1_02_M02857 TRANSFAC - 26852255 26852270 1.0E-05 ACATTTAAACAAACAG 16 V_SIRT6_01_M01797 TRANSFAC + 26854619 26854626 7.0E-06 AGATAAGA 8 V_ZBTB4_04_M02929 TRANSFAC - 26846424 26846439 2.0E-06 CTCTCACTGGCAGACT 16 V_NRF2_Q4_M00821 TRANSFAC + 26852221 26852233 2.0E-06 CTCCTGAGTCAGG 13 V_MTATA_B_M00320 TRANSFAC - 26855468 26855484 9.0E-06 CTCCATAAAGCCCTGGG 17 V_FOX_Q2_M00809 TRANSFAC + 26852253 26852265 1.0E-06 CACTGTTTGTTTA 13 V_LMO2COM_02_M00278 TRANSFAC + 26854485 26854493 3.0E-06 CAGATAAGG 9 V_T3RBETA_Q6_01_M02119 TRANSFAC - 26855389 26855405 5.0E-06 AGGTCATTTAAGGTCTG 17 V_GATA2_03_M00349 TRANSFAC + 26854617 26854626 7.0E-06 TCAGATAAGA 10 V_SRF_06_M02916 TRANSFAC + 26846342 26846358 2.0E-06 GTCTCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 26846343 26846359 0.0E+00 TCTCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 26846344 26846360 0.0E+00 CTCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 26846345 26846361 1.0E-06 TCAAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 26846346 26846362 0.0E+00 CAAAAAAAAAAAAAAGT 17 V_SRF_06_M02916 TRANSFAC + 26846347 26846363 1.0E-06 AAAAAAAAAAAAAAGTG 17 V_SRF_06_M02916 TRANSFAC + 26846348 26846364 1.0E-06 AAAAAAAAAAAAAGTGC 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 26855163 26855180 9.0E-06 GCCAGGGAGGAAGGCAAG 18 V_FOXJ2_01_M00422 TRANSFAC - 26852251 26852268 1.0E-06 ATTTAAACAAACAGTGAG 18 V_EKLF_Q5_M01874 TRANSFAC + 26855463 26855472 5.0E-06 CCACACCCAG 10 V_DR3_Q4_M00966 TRANSFAC - 26852398 26852418 4.0E-06 AAAGTCCTCTCTCAACTCTGT 21 V_GATA5_03_M02756 TRANSFAC + 26854481 26854497 4.0E-06 TAGGCAGATAAGGACAG 17 V_CMAF_01_M01070 TRANSFAC + 26846573 26846591 5.0E-06 GTATTTGCTGATACTTGCA 19 V_TCF3_05_M02920 TRANSFAC + 26846343 26846357 4.0E-06 TCTCAAAAAAAAAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.