Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MCHR2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84539 melanin-concentrating hormone receptor 2 chr6 - 100441599 - 100447114 100442099 Transcription Factor Binding Sites   Download all TFBS in the MCHR2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 100442172 100442180 8.0E-06 GCACTTGAA 9 SOX21_HMG_DBD_dimeric_15_1 SELEX - 100440375 100440389 3.0E-06 ACCAATTTCATTTTT 15 SOX4_HMG_DBD_dimeric_16_1 SELEX - 100440375 100440390 3.0E-06 AACCAATTTCATTTTT 16 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 100440370 100440387 8.0E-06 ACACTAAAAATGAAATTG 18 SRY_HMG_DBD_dimeric_15_1 SELEX - 100440375 100440389 3.0E-06 ACCAATTTCATTTTT 15 SOX2_HMG_full_dimeric_17_1 SELEX - 100440374 100440390 1.0E-06 AACCAATTTCATTTTTA 17 SOX2_HMG_full_dimeric_17_1 SELEX + 100445185 100445201 9.0E-06 TACCTCTGGCATTGTCC 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 100442158 100442174 1.0E-05 GAAAATAAGAAAGAACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 100440338 100440349 4.0E-06 ACTAGAAATAGA 12 Tp53_p53l_DBD_dimeric_18_2 SELEX + 100445208 100445225 1.0E-06 AACATGTCCTGGCTAGCC 18 Tp53_p53l_DBD_dimeric_18_2 SELEX - 100445208 100445225 2.0E-06 GGCTAGCCAGGACATGTT 18 ZNF232_C2H2_full_monomeric_19_1 SELEX - 100440465 100440483 3.0E-06 TAGTTAAACGGAGATTGAA 19 Tp73_p53l_DBD_dimeric_18_1 SELEX + 100445208 100445225 9.0E-06 AACATGTCCTGGCTAGCC 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 100440338 100440349 8.0E-06 ACTAGAAATAGA 12 Sox17_HMG_DBD_dimeric_15_1 SELEX - 100440375 100440389 4.0E-06 ACCAATTTCATTTTT 15 SOX18_HMG_full_dimeric_15_1 SELEX - 100440375 100440389 6.0E-06 ACCAATTTCATTTTT 15 SOX7_HMG_full_dimeric_17_1 SELEX - 100440374 100440390 2.0E-06 AACCAATTTCATTTTTA 17 NKX2-3_homeodomain_full_monomeric_10_1 SELEX - 100442172 100442181 7.0E-06 AGCACTTGAA 10 NR3C1_MA0113.1 JASPAR + 100445202 100445219 0.0E+00 AAGAAGAACATGTCCTGG 18 Sox11_HMG_DBD_dimeric_15_1 SELEX - 100440375 100440389 1.0E-06 ACCAATTTCATTTTT 15 SPI1_ETS_full_monomeric_14_1 SELEX - 100445171 100445184 8.0E-06 CAAAAGAGGCAGTG 14 TP53_MA0106.1 JASPAR + 100445205 100445224 0.0E+00 AAGAACATGTCCTGGCTAGC 20 Sox3_HMG_DBD_dimeric_17_1 SELEX + 100440374 100440390 4.0E-06 TAAAAATGAAATTGGTT 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 100440374 100440390 3.0E-06 AACCAATTTCATTTTTA 17 TP63_p53l_DBD_dimeric_18_1 SELEX + 100445208 100445225 7.0E-06 AACATGTCCTGGCTAGCC 18 SOX9_HMG_full_dimeric_17_1 SELEX - 100440374 100440390 5.0E-06 AACCAATTTCATTTTTA 17 V_FOXP1_01_M00987 TRANSFAC - 100445250 100445269 8.0E-06 GAATTTGTGTTTTCTATGCT 20 V_GAF_Q6_M01209 TRANSFAC + 100445263 100445273 9.0E-06 CAAATTCCCAG 11 V_FOXP3_Q4_M00992 TRANSFAC - 100444056 100444072 2.0E-06 GAAGAGCTTTGTCTGAC 17 V_TCF3_01_M01594 TRANSFAC + 100442161 100442173 1.0E-06 TCTTTCTTATTTT 13 V_NKX29_01_M01352 TRANSFAC - 100442170 100442186 4.0E-06 AGATAAGCACTTGAAAA 17 V_NKX29_01_M01352 TRANSFAC + 100442171 100442187 6.0E-06 TTTCAAGTGCTTATCTA 17 V_STAT_Q6_M00777 TRANSFAC - 100445199 100445211 2.0E-06 TGTTCTTCTTGGA 13 V_MAFB_03_M02879 TRANSFAC + 100444876 100444890 5.0E-06 GCATTGCATAAAAAG 15 V_IRF_Q6_01_M00972 TRANSFAC + 100440375 100440385 2.0E-06 AAAAATGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC + 100440373 100440388 4.0E-06 CTAAAAATGAAATTGG 16 V_FOXO3A_Q1_M01137 TRANSFAC - 100442164 100442175 4.0E-06 TGAAAATAAGAA 12 V_CEBP_Q2_M00190 TRANSFAC + 100444876 100444889 1.0E-06 GCATTGCATAAAAA 14 V_FOXJ1_03_M02750 TRANSFAC + 100445253 100445268 9.0E-06 ATAGAAAACACAAATT 16 V_NKX24_01_M01350 TRANSFAC - 100442169 100442184 1.0E-06 ATAAGCACTTGAAAAT 16 V_NR3C1_01_M02219 TRANSFAC + 100445202 100445219 0.0E+00 AAGAAGAACATGTCCTGG 18 V_BARBIE_01_M00238 TRANSFAC + 100444883 100444897 3.0E-06 ATAAAAAGCAGTGAG 15 V_FOXA2_02_M02853 TRANSFAC - 100442160 100442174 9.0E-06 GAAAATAAGAAAGAA 15 V_PR_Q2_M00960 TRANSFAC - 100442157 100442166 5.0E-06 GAAAGAACAA 10 V_NKX26_01_M01322 TRANSFAC - 100442169 100442184 4.0E-06 ATAAGCACTTGAAAAT 16 V_P53_03_M01651 TRANSFAC + 100445207 100445226 0.0E+00 GAACATGTCCTGGCTAGCCT 20 V_P53_03_M01651 TRANSFAC - 100445207 100445226 0.0E+00 AGGCTAGCCAGGACATGTTC 20 V_RSRFC4_Q2_M00407 TRANSFAC - 100440335 100440351 3.0E-06 AAACTAGAAATAGATTT 17 V_NKX22_02_M01372 TRANSFAC - 100442168 100442184 0.0E+00 ATAAGCACTTGAAAATA 17 V_MEF2_03_M00232 TRANSFAC - 100440334 100440355 8.0E-06 TCAAAAACTAGAAATAGATTTT 22 V_ISRE_01_M00258 TRANSFAC - 100440373 100440387 8.0E-06 CAATTTCATTTTTAG 15 V_MEF2_04_M00233 TRANSFAC + 100440366 100440387 5.0E-06 GCTGACACTAAAAATGAAATTG 22 V_NKX23_01_M01457 TRANSFAC + 100442171 100442186 3.0E-06 TTTCAAGTGCTTATCT 16 V_ICSBP_Q6_M00699 TRANSFAC + 100440376 100440387 1.0E-05 AAAATGAAATTG 12 V_MTF1_06_M02882 TRANSFAC - 100442159 100442172 0.0E+00 AAATAAGAAAGAAC 14 V_TTF1_Q5_M02034 TRANSFAC - 100442169 100442182 9.0E-06 AAGCACTTGAAAAT 14 V_NKX25_03_M01414 TRANSFAC - 100442169 100442184 2.0E-06 ATAAGCACTTGAAAAT 16 V_CEBPA_01_M00116 TRANSFAC + 100444876 100444889 7.0E-06 GCATTGCATAAAAA 14 V_PARP_Q3_M01211 TRANSFAC - 100440339 100440348 8.0E-06 CTAGAAATAG 10 V_NKX22_01_M00485 TRANSFAC + 100442173 100442182 6.0E-06 TCAAGTGCTT 10 V_P53_05_M01655 TRANSFAC + 100445207 100445226 0.0E+00 GAACATGTCCTGGCTAGCCT 20 V_P53_05_M01655 TRANSFAC - 100445207 100445226 1.0E-06 AGGCTAGCCAGGACATGTTC 20 V_P53_04_M01652 TRANSFAC + 100445207 100445226 0.0E+00 GAACATGTCCTGGCTAGCCT 20 V_P53_04_M01652 TRANSFAC - 100445207 100445226 0.0E+00 AGGCTAGCCAGGACATGTTC 20 V_RSRFC4_01_M00026 TRANSFAC + 100440336 100440351 4.0E-06 AATCTATTTCTAGTTT 16 V_P53_01_M00034 TRANSFAC + 100445207 100445226 3.0E-06 GAACATGTCCTGGCTAGCCT 20 V_P53_01_M00034 TRANSFAC - 100445207 100445226 5.0E-06 AGGCTAGCCAGGACATGTTC 20 V_CEBPB_Q6_M01896 TRANSFAC - 100444877 100444886 7.0E-06 TTATGCAATG 10 V_IRF1_Q6_01_M01881 TRANSFAC - 100440374 100440387 0.0E+00 CAATTTCATTTTTA 14 V_P63_01_M01656 TRANSFAC + 100445207 100445226 2.0E-06 GAACATGTCCTGGCTAGCCT 20 V_P63_01_M01656 TRANSFAC - 100445207 100445226 1.0E-06 AGGCTAGCCAGGACATGTTC 20 V_GATA6_04_M02757 TRANSFAC - 100442175 100442191 9.0E-06 AGTCTAGATAAGCACTT 17 V_SMAD1_01_M01590 TRANSFAC - 100442160 100442171 3.0E-06 AATAAGAAAGAA 12 V_NANOG_02_M01247 TRANSFAC - 100442156 100442175 1.0E-06 TGAAAATAAGAAAGAACAAG 20 V_NKX21_01_M01312 TRANSFAC - 100442169 100442184 6.0E-06 ATAAGCACTTGAAAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.