Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SYT3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84258 synaptotagmin III chr19 - 51140802 - 51148092 51141302 Transcription Factor Binding Sites   Download all TFBS in the SYT3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 51139782 51139793 9.0E-06 TGGTTGTAATCA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 51139782 51139793 7.0E-06 TGATTACAACCA 12 EWSR1-FLI1_MA0149.1 JASPAR - 51143170 51143187 6.0E-06 GGAGTGGGGGAAGGAGGG 18 EBF1_MA0154.1 JASPAR + 51142987 51142996 5.0E-06 ACCCCAGGGA 10 IRF7_IRF_DBD_trimeric_17_1 SELEX - 51142667 51142683 6.0E-06 AAAAAAAAAATCCCATC 17 Pax4_MA0068.1 JASPAR - 51142657 51142686 2.0E-06 AAAAAAAAAAAAATCCCATCCTCTCTGCAG 30 Pax4_MA0068.1 JASPAR - 51142659 51142688 0.0E+00 AAAAAAAAAAAAAAATCCCATCCTCTCTGC 30 Pax4_MA0068.1 JASPAR - 51142660 51142689 0.0E+00 AAAAAAAAAAAAAAAATCCCATCCTCTCTG 30 Pax4_MA0068.1 JASPAR - 51142668 51142697 9.0E-06 AAAACCTTAAAAAAAAAAAAAAAATCCCAT 30 SOX8_HMG_full_dimeric_13_1 SELEX - 51142558 51142570 5.0E-06 GGGAATTGTAGTC 13 SP1_MA0079.2 JASPAR + 51142887 51142896 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 51142963 51142972 7.0E-06 CCCCGCCCCC 10 znf143_MA0088.1 JASPAR - 51143225 51143244 1.0E-05 CAATCTCCCTGCTTCCTTGC 20 SP1_C2H2_DBD_monomeric_11_1 SELEX + 51142962 51142972 4.0E-06 ACCCCGCCCCC 11 Foxd3_MA0041.1 JASPAR + 51142672 51142683 7.0E-06 GATTTTTTTTTT 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 51142674 51142686 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 51142675 51142687 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 51142676 51142688 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 51142677 51142689 6.0E-06 AAAAAAAAAAAAA 13 V_FOXP1_01_M00987 TRANSFAC + 51142676 51142695 5.0E-06 TTTTTTTTTTTTTTAAGGTT 20 V_DBX1_01_M01483 TRANSFAC - 51142674 51142690 6.0E-06 TAAAAAAAAAAAAAAAA 17 V_HMGIY_Q3_M01010 TRANSFAC + 51142668 51142682 1.0E-06 ATGGGATTTTTTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC + 51142673 51142687 1.0E-05 ATTTTTTTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC - 51142674 51142688 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 51142675 51142689 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC - 51142676 51142690 8.0E-06 TAAAAAAAAAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC + 51142672 51142683 8.0E-06 GATTTTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC + 51142673 51142688 6.0E-06 ATTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 51142674 51142689 0.0E+00 TTTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC + 51142682 51142697 7.0E-06 TTTTTTTTAAGGTTTT 16 V_SP1_Q6_01_M00931 TRANSFAC - 51142962 51142971 7.0E-06 GGGGCGGGGT 10 V_SP1_03_M02281 TRANSFAC + 51142887 51142896 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 51142963 51142972 7.0E-06 CCCCGCCCCC 10 V_TCFAP2E_04_M02926 TRANSFAC - 51142672 51142685 9.0E-06 AAAAAAAAAAAATC 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142673 51142686 3.0E-06 AAAAAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142674 51142687 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142675 51142688 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142676 51142689 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142677 51142690 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142678 51142691 1.0E-06 TTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142681 51142694 1.0E-06 ACCTTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 51142682 51142695 2.0E-06 AACCTTAAAAAAAA 14 V_ELF4_04_M02850 TRANSFAC - 51142671 51142687 4.0E-06 AAAAAAAAAAAAAATCC 17 V_ELF4_04_M02850 TRANSFAC - 51142672 51142688 3.0E-06 AAAAAAAAAAAAAAATC 17 V_ELF4_04_M02850 TRANSFAC - 51142673 51142689 5.0E-06 AAAAAAAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC - 51142674 51142690 4.0E-06 TAAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 51142675 51142691 1.0E-06 TTAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 51142676 51142692 0.0E+00 CTTAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 51142677 51142693 0.0E+00 CCTTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 51142678 51142694 1.0E-05 ACCTTAAAAAAAAAAAA 17 V_GC_01_M00255 TRANSFAC - 51143151 51143164 7.0E-06 AGGGGGAGGAGCCG 14 V_ZFP105_03_M02827 TRANSFAC - 51142671 51142685 7.0E-06 AAAAAAAAAAAATCC 15 V_ZFP105_03_M02827 TRANSFAC - 51142672 51142686 5.0E-06 AAAAAAAAAAAAATC 15 V_ZFP105_03_M02827 TRANSFAC - 51142673 51142687 0.0E+00 AAAAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC - 51142674 51142688 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 51142675 51142689 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 51142676 51142690 0.0E+00 TAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 51142677 51142691 0.0E+00 TTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 51142678 51142692 1.0E-06 CTTAAAAAAAAAAAA 15 V_ZBTB7B_03_M02826 TRANSFAC - 51142692 51142706 2.0E-06 TAACCCCCCAAAACC 15 V_KLF7_03_M02773 TRANSFAC + 51142959 51142974 1.0E-06 TCTACCCCGCCCCCAT 16 V_EBF1_01_M02267 TRANSFAC + 51142987 51142996 5.0E-06 ACCCCAGGGA 10 V_SP1_01_M00008 TRANSFAC - 51142962 51142971 3.0E-06 GGGGCGGGGT 10 V_SP4_Q5_M01273 TRANSFAC + 51142886 51142896 5.0E-06 GCCCCTCCCCC 11 V_MTF1_06_M02882 TRANSFAC - 51142672 51142685 2.0E-06 AAAAAAAAAAAATC 14 V_MTF1_06_M02882 TRANSFAC - 51142674 51142687 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 51142675 51142688 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 51142676 51142689 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 51142677 51142690 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 51142680 51142693 1.0E-05 CCTTAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 51142674 51142687 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 51142675 51142688 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 51142676 51142689 3.0E-06 AAAAAAAAAAAAAA 14 V_ZFP281_01_M01597 TRANSFAC - 51142887 51142897 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 51142963 51142973 6.0E-06 TGGGGGCGGGG 11 V_SRF_06_M02916 TRANSFAC - 51142669 51142685 8.0E-06 AAAAAAAAAAAATCCCA 17 V_SRF_06_M02916 TRANSFAC - 51142670 51142686 8.0E-06 AAAAAAAAAAAAATCCC 17 V_SRF_06_M02916 TRANSFAC - 51142671 51142687 0.0E+00 AAAAAAAAAAAAAATCC 17 V_SRF_06_M02916 TRANSFAC - 51142672 51142688 0.0E+00 AAAAAAAAAAAAAAATC 17 V_SRF_06_M02916 TRANSFAC - 51142673 51142689 0.0E+00 AAAAAAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC - 51142674 51142690 0.0E+00 TAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 51142675 51142691 0.0E+00 TTAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 51142676 51142692 0.0E+00 CTTAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 51142677 51142693 0.0E+00 CCTTAAAAAAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 51143170 51143187 6.0E-06 GGAGTGGGGGAAGGAGGG 18 V_ZIC3_04_M02837 TRANSFAC + 51142890 51142904 4.0E-06 CTCCCCCGGGGTGGC 15 V_ZIC1_04_M02835 TRANSFAC - 51142889 51142902 6.0E-06 CACCCCGGGGGAGG 14 V_ZIC1_04_M02835 TRANSFAC + 51142890 51142903 3.0E-06 CTCCCCCGGGGTGG 14 V_SP1_Q2_01_M00933 TRANSFAC + 51142963 51142972 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC - 51143152 51143164 9.0E-06 AGGGGGAGGAGCC 13 V_TCF3_05_M02920 TRANSFAC - 51142673 51142687 9.0E-06 AAAAAAAAAAAAAAT 15 V_TCF3_05_M02920 TRANSFAC - 51142681 51142695 1.0E-06 AACCTTAAAAAAAAA 15 V_ZIC2_04_M02836 TRANSFAC + 51142890 51142904 8.0E-06 CTCCCCCGGGGTGGC 15 V_PAX4_04_M00380 TRANSFAC - 51142654 51142683 4.0E-06 AAAAAAAAAATCCCATCCTCTCTGCAGCCC 30 V_PAX4_04_M00380 TRANSFAC - 51142659 51142688 0.0E+00 AAAAAAAAAAAAAAATCCCATCCTCTCTGC 30 V_PAX4_04_M00380 TRANSFAC - 51142660 51142689 2.0E-06 AAAAAAAAAAAAAAAATCCCATCCTCTCTG 30 V_NANOG_02_M01247 TRANSFAC - 51142671 51142690 5.0E-06 TAAAAAAAAAAAAAAAATCC 20 V_NANOG_02_M01247 TRANSFAC - 51142672 51142691 1.0E-06 TTAAAAAAAAAAAAAAAATC 20 V_NANOG_02_M01247 TRANSFAC - 51142673 51142692 5.0E-06 CTTAAAAAAAAAAAAAAAAT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.