Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

GARNL3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84253 GTPase activating Rap/RanGAP domain-like 3 chr9 + 130021755 - 130027255 130026755 Transcription Factor Binding Sites   Download all TFBS in the GARNL3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 130024955 130024966 3.0E-06 GCCACCCCCACT 12 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 130027430 130027442 8.0E-06 ATAAATAACTATA 13 Tp53_p53l_DBD_dimeric_18_1 SELEX + 130030186 130030203 9.0E-06 ACAAGTCACAAGTCTTGT 18 Tp53_p53l_DBD_dimeric_18_1 SELEX - 130030186 130030203 6.0E-06 ACAAGACTTGTGACTTGT 18 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 130026036 130026048 9.0E-06 ACAAAAGGTTAAA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 130027430 130027446 4.0E-06 ATAAATAACTATACAAA 17 En1_MA0027.1 JASPAR - 130030329 130030339 2.0E-06 AAGTAGTTCTC 11 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 130030535 130030546 2.0E-06 TAAGAAAACAAT 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 130027425 130027437 7.0E-06 TTGGAATAAATAA 13 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 130030536 130030546 1.0E-05 TAAGAAAACAA 11 Pax4_MA0068.1 JASPAR - 130026025 130026054 3.0E-06 GAGAAATTTAACCTTTTGTAGTCCTCCCTC 30 Spz1_MA0111.1 JASPAR - 130030511 130030521 9.0E-06 AGGGAAACAGC 11 SOX2_HMG_full_dimeric_15_1 SELEX - 130030396 130030410 6.0E-06 CTGACTCTCAGTCAC 15 FOXI1_MA0042.1 JASPAR - 130025030 130025041 7.0E-06 AGGTATTTGTAT 12 SRY_MA0084.1 JASPAR - 130030535 130030543 9.0E-06 GAAAACAAT 9 znf143_MA0088.1 JASPAR - 130027060 130027079 9.0E-06 CAGTCCCCAGCAGCCATTGC 20 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 130027202 130027222 2.0E-06 ATAATACTGATGAAGCATTTT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 130027202 130027222 3.0E-06 AAAATGCTTCATCAGTATTAT 21 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 130024805 130024819 6.0E-06 CACACATCCTGCAAG 15 Foxd3_MA0041.1 JASPAR + 130030534 130030545 2.0E-06 GATTGTTTTCTT 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 130025032 130025048 9.0E-06 TTAATGAAGGTATTTGT 17 MAFG_bZIP_full_dimeric_21_1 SELEX - 130027202 130027222 6.0E-06 AAAATGCTTCATCAGTATTAT 21 TFAP4_bHLH_full_dimeric_10_1 SELEX - 130030507 130030516 9.0E-06 AACAGCTGAG 10 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 130024750 130024761 9.0E-06 ATGGATATGCAT 12 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 130030640 130030649 8.0E-06 ATCACATGAG 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 130027428 130027440 5.0E-06 GAATAAATAACTA 13 Sox1_HMG_DBD_dimeric_15_2 SELEX - 130030396 130030410 8.0E-06 CTGACTCTCAGTCAC 15 HNF1A_MA0046.1 JASPAR - 130027426 130027439 7.0E-06 AGTTATTTATTCCA 14 V_FOXP1_01_M00987 TRANSFAC - 130025016 130025035 6.0E-06 TTGTATATCTTTTGAATCAT 20 V_HNF3B_01_M00131 TRANSFAC + 130030532 130030546 1.0E-06 GGGATTGTTTTCTTA 15 V_TST1_02_M01316 TRANSFAC - 130025038 130025054 7.0E-06 ACTGCATTAATGAAGGT 17 V_TST1_02_M01316 TRANSFAC + 130025039 130025055 8.0E-06 CCTTCATTAATGCAGTA 17 V_FREAC7_01_M00293 TRANSFAC + 130027425 130027440 6.0E-06 TTGGAATAAATAACTA 16 V_CDX2_Q5_01_M01659 TRANSFAC - 130030356 130030366 2.0E-06 TCAATAAATAT 11 V_EVI1_05_M00082 TRANSFAC - 130030696 130030706 1.0E-05 AGACAAGAAAG 11 V_BTEB3_Q5_M01865 TRANSFAC + 130026023 130026035 5.0E-06 GAGAGGGAGGACT 13 V_MAFK_03_M02776 TRANSFAC - 130025051 130025065 9.0E-06 AGTAAATGCTTACTG 15 V_ZEC_01_M01081 TRANSFAC - 130026249 130026261 1.0E-06 AAAGGTAGGTTGC 13 V_EVI1_04_M00081 TRANSFAC + 130027422 130027436 3.0E-06 GGATTGGAATAAATA 15 V_FOXD3_01_M00130 TRANSFAC + 130030534 130030545 3.0E-06 GATTGTTTTCTT 12 V_STAT_Q6_M00777 TRANSFAC + 130026135 130026147 8.0E-06 TGTCTTTCTTGGA 13 V_SATB1_Q3_M01723 TRANSFAC - 130025034 130025049 8.0E-06 ATTAATGAAGGTATTT 16 V_SATB1_Q3_M01723 TRANSFAC + 130027430 130027445 7.0E-06 ATAAATAACTATACAA 16 V_MAFB_03_M02879 TRANSFAC - 130027145 130027159 6.0E-06 CATTTGCAAAAAGGG 15 V_IRF_Q6_01_M00972 TRANSFAC - 130030670 130030680 3.0E-06 GAAAGAGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 130030667 130030682 4.0E-06 GAGAAAGAGAAAATAG 16 V_AP4_Q6_M00176 TRANSFAC + 130030507 130030516 8.0E-06 CTCAGCTGTT 10 V_FOXO3A_Q1_M01137 TRANSFAC + 130027429 130027440 5.0E-06 AATAAATAACTA 12 V_OCT_C_M00210 TRANSFAC + 130026293 130026305 5.0E-06 TTTCTTTGCATGT 13 V_NERF_Q2_M00531 TRANSFAC + 130025080 130025097 9.0E-06 TGCCAGGCAGTAGGCCAG 18 V_HEN1_01_M00068 TRANSFAC + 130030501 130030522 0.0E+00 CTGGATCTCAGCTGTTTCCCTG 22 V_HEN1_01_M00068 TRANSFAC - 130030501 130030522 6.0E-06 CAGGGAAACAGCTGAGATCCAG 22 V_HOXD13_01_M01404 TRANSFAC - 130027024 130027039 6.0E-06 CCCTCAATAAAAAGCA 16 V_PSX1_01_M01435 TRANSFAC + 130025037 130025053 3.0E-06 TACCTTCATTAATGCAG 17 V_CRX_Q4_M00623 TRANSFAC + 130026111 130026123 1.0E-06 TCTCTAATCTCAT 13 V_HNF3_Q6_M00791 TRANSFAC - 130030535 130030547 6.0E-06 ATAAGAAAACAAT 13 V_OCT1_05_M00161 TRANSFAC + 130030334 130030347 3.0E-06 CTACTTAGCATTCT 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 130025028 130025038 5.0E-06 TATTTGTATAT 11 V_PAX5_01_M00143 TRANSFAC + 130030400 130030427 3.0E-06 CTGAGAGTCAGGGGAGAGAAGCAAAACC 28 V_ISRE_01_M00258 TRANSFAC + 130030668 130030682 8.0E-06 TATTTTCTCTTTCTC 15 V_IRF3_06_M02871 TRANSFAC - 130026286 130026299 1.0E-06 AAAGAAAGGTGCAT 14 V_PAX6_Q2_M00979 TRANSFAC - 130027222 130027235 5.0E-06 CAGAGCTGGAACAA 14 V_AP4_Q5_M00175 TRANSFAC + 130030507 130030516 3.0E-06 CTCAGCTGTT 10 V_EVI1_Q3_M02002 TRANSFAC + 130030697 130030705 6.0E-06 TTTCTTGTC 9 V_XFD2_01_M00268 TRANSFAC - 130030353 130030366 8.0E-06 TCAATAAATATGTG 14 V_STAF_02_M00264 TRANSFAC - 130027058 130027078 2.0E-06 AGTCCCCAGCAGCCATTGCAG 21 V_OCT4_02_M01124 TRANSFAC + 130030540 130030554 9.0E-06 TTTCTTATGAAGAAC 15 V_TFIII_Q6_M00706 TRANSFAC + 130026024 130026032 6.0E-06 AGAGGGAGG 9 V_OTX2_Q3_M01719 TRANSFAC - 130026112 130026124 6.0E-06 AATGAGATTAGAG 13 V_MTF1_06_M02882 TRANSFAC - 130030536 130030549 6.0E-06 TCATAAGAAAACAA 14 V_AP3_Q6_M00690 TRANSFAC - 130026237 130026244 5.0E-06 TCTAAATT 8 V_TAL1_01_M01591 TRANSFAC - 130030412 130030424 2.0E-06 TTTGCTTCTCTCC 13 V_HNF1_01_M00132 TRANSFAC - 130027425 130027439 5.0E-06 AGTTATTTATTCCAA 15 V_CAAT_C_M00200 TRANSFAC - 130027400 130027424 3.0E-06 TCCAATCCTTACACTGTACCCACAT 25 V_OCT1_Q6_M00195 TRANSFAC + 130025026 130025040 4.0E-06 AGATATACAAATACC 15 V_HEN1_02_M00058 TRANSFAC + 130030501 130030522 2.0E-06 CTGGATCTCAGCTGTTTCCCTG 22 V_PBX1_02_M00124 TRANSFAC + 130024753 130024767 8.0E-06 CATATCCATCACTTT 15 V_BBX_03_M02739 TRANSFAC - 130030587 130030601 9.0E-06 CCTTTCAGTGAATTG 15 V_IRF1_Q6_01_M01881 TRANSFAC + 130030668 130030681 1.0E-06 TATTTTCTCTTTCT 14 V_HFH3_01_M00289 TRANSFAC - 130025029 130025041 2.0E-06 AGGTATTTGTATA 13 V_HFH3_01_M00289 TRANSFAC + 130030354 130030366 6.0E-06 ACATATTTATTGA 13 V_FOXJ2_01_M00422 TRANSFAC + 130027424 130027441 8.0E-06 ATTGGAATAAATAACTAT 18 V_HNF1A_Q5_M02013 TRANSFAC - 130027429 130027439 3.0E-06 AGTTATTTATT 11 V_SATB1_01_M01232 TRANSFAC + 130030227 130030238 5.0E-06 TATCAGTAATGA 12 V_HNF3B_Q6_M02014 TRANSFAC - 130027429 130027437 1.0E-05 TTATTTATT 9 V_RFX3_04_M02788 TRANSFAC - 130026180 130026202 8.0E-06 TCTGATGTTTAGCAACCAGAGAA 23 V_FREAC4_01_M00292 TRANSFAC - 130030533 130030548 1.0E-05 CATAAGAAAACAATCC 16 V_TFE_Q6_M01029 TRANSFAC + 130030641 130030648 1.0E-05 TCATGTGA 8 V_HNF1A_01_M02162 TRANSFAC - 130027426 130027439 7.0E-06 AGTTATTTATTCCA 14 V_OBOX5_01_M01381 TRANSFAC + 130026055 130026071 9.0E-06 ATATAAGATTAATTCAG 17 V_LTF_Q6_M01692 TRANSFAC - 130030392 130030400 1.0E-05 GTCACTTGC 9 V_CDPCR3_01_M00105 TRANSFAC + 130030351 130030365 7.0E-06 AACACATATTTATTG 15 V_OBOX6_06_M03067 TRANSFAC - 130026055 130026071 9.0E-06 CTGAATTAATCTTATAT 17 V_FOXK1_03_M02752 TRANSFAC + 130025023 130025039 6.0E-06 AAAAGATATACAAATAC 17 V_PAX4_04_M00380 TRANSFAC - 130027410 130027439 1.0E-05 AGTTATTTATTCCAATCCAATCCTTACACT 30 V_OCT4_01_M01125 TRANSFAC + 130030539 130030553 4.0E-06 TTTTCTTATGAAGAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.