Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CEP78 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84131 centrosomal protein 78kDa chr9 + 80845990 - 80851490 80850990 Transcription Factor Binding Sites   Download all TFBS in the CEP78 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 80850330 80850347 2.0E-06 TTTGTAGATATTAACACA 18 POU4F2_POU_full_monomeric_16_1 SELEX - 80849767 80849782 9.0E-06 CAGCTTAATAAATGAA 16 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 80850332 80850344 5.0E-06 GTTAATATCTACA 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 80850333 80850345 6.0E-06 GTAGATATTAACA 13 SOX21_HMG_DBD_dimeric_15_1 SELEX + 80849753 80849767 5.0E-06 AGGAATGGTAATGTT 15 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 80849761 80849778 9.0E-06 TTAATAAATGAAACATTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 80850030 80850047 4.0E-06 CCACTTAGCTTCCACTTA 18 SOX10_HMG_full_dimeric_15_3 SELEX - 80850363 80850377 6.0E-06 GTGAACTGCGGTCAT 15 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 80850357 80850368 9.0E-06 GGTCATTAAATC 12 SPIC_ETS_full_monomeric_14_1 SELEX + 80848573 80848586 9.0E-06 ATAATAGGGAAGAA 14 SPIC_ETS_full_monomeric_14_1 SELEX - 80850511 80850524 5.0E-06 AAAAAAAGAAAGAA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 80854611 80854622 1.0E-05 CGGCAGGTGTCA 12 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 80850133 80850149 1.0E-05 TACTTAAACATTGCTTA 17 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 80850743 80850760 8.0E-06 GCGGATCACCTGGGGTCA 18 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 80850505 80850516 5.0E-06 AAAGAAAATAAA 12 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX + 80850440 80850450 9.0E-06 ACAGACACATT 11 ZNF232_C2H2_full_monomeric_19_1 SELEX - 80850486 80850504 2.0E-06 AAGTGAAATGTGGATGTAA 19 EBF1_MA0154.1 JASPAR - 80850399 80850408 5.0E-06 ACTCAAGGGA 10 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 80850358 80850368 8.0E-06 GGTCATTAAAT 11 TEAD1_TEA_full_monomeric_10_1 SELEX + 80850445 80850454 7.0E-06 CACATTCCTC 10 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 80850358 80850367 5.0E-06 GTCATTAAAT 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 80850332 80850345 9.0E-06 TGTTAATATCTACA 14 ONECUT1_CUT_full_monomeric_14_1 SELEX + 80851451 80851464 8.0E-06 TCAAGATCAATAAA 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 80850503 80850513 6.0E-06 GAAAATAAAAA 11 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 80851451 80851464 7.0E-06 TCAAGATCAATAAA 14 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 80850358 80850368 4.0E-06 GGTCATTAAAT 11 SOX15_HMG_full_dimeric_15_1 SELEX - 80849753 80849767 6.0E-06 AACATTACCATTCCT 15 SOX15_HMG_full_dimeric_15_1 SELEX + 80849967 80849981 9.0E-06 AGGACTATCATTGCT 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 80850503 80850513 4.0E-06 GAAAATAAAAA 11 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 80846757 80846777 8.0E-06 GAAATGCTTCCTCAACAAAGT 21 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 80849985 80850002 8.0E-06 GCAATTGCATACCAATAG 18 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 80850030 80850047 5.0E-06 CCACTTAGCTTCCACTTA 18 POU1F1_POU_DBD_monomeric_17_1 SELEX + 80849784 80849800 5.0E-06 TTTATGAATATACAAGC 17 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 80850177 80850189 5.0E-06 TAAGTACTAGTTA 13 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 80850332 80850345 6.0E-06 TGTTAATATCTACA 14 Nkx3-2_MA0122.1 JASPAR - 80850029 80850037 8.0E-06 CTAAGTGGA 9 Nkx3-2_MA0122.1 JASPAR - 80850040 80850048 2.0E-06 TTAAGTGGA 9 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 80849830 80849838 9.0E-06 CACATAAAA 9 Pou5f1_MA0142.1 JASPAR - 80849987 80850001 6.0E-06 TATTGGTATGCAATT 15 TEAD1_TEA_full_dimeric_17_1 SELEX + 80850446 80850462 9.0E-06 ACATTCCTCAGATGTTT 17 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 80850358 80850367 3.0E-06 GTCATTAAAT 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 80850503 80850510 4.0E-06 AATAAAAA 8 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 80850445 80850454 9.0E-06 CACATTCCTC 10 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 80850735 80850749 4.0E-06 GGGGTCAGGAGTTCG 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 80849761 80849778 1.0E-05 TTAATAAATGAAACATTA 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 80850030 80850047 1.0E-05 CCACTTAGCTTCCACTTA 18 Nobox_MA0125.1 JASPAR + 80849840 80849847 7.0E-06 TAATTGGT 8 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 80850358 80850368 3.0E-06 GGTCATTAAAT 11 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 80850503 80850515 0.0E+00 AAGAAAATAAAAA 13 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 80851451 80851464 6.0E-06 TCAAGATCAATAAA 14 TEAD1_MA0090.1 JASPAR + 80850445 80850456 1.0E-06 CACATTCCTCAG 12 V_DMRT4_01_M01149 TRANSFAC + 80849762 80849774 4.0E-06 AATGTTTCATTTA 13 V_HOXA9_01_M01351 TRANSFAC + 80849827 80849843 0.0E+00 TCGCACATAAAAATAAT 17 V_HOXA9_01_M01351 TRANSFAC - 80850354 80850370 1.0E-06 GCGGTCATTAAATCTTT 17 V_MEQ_01_M02049 TRANSFAC - 80849882 80849890 2.0E-06 AACACACAT 9 V_FOXP1_01_M00987 TRANSFAC + 80850500 80850519 9.0E-06 CACTTTTTATTTTCTTTCTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 80850166 80850178 2.0E-06 ATTATTTCAAATA 13 V_FREAC7_01_M00293 TRANSFAC + 80849934 80849949 3.0E-06 ATGCAATAAACACAAT 16 V_TCF3_01_M01594 TRANSFAC + 80850512 80850524 1.0E-06 TCTTTCTTTTTTT 13 V_CDX2_Q5_01_M01659 TRANSFAC - 80849768 80849778 3.0E-06 TTAATAAATGA 11 V_TBX15_01_M01263 TRANSFAC + 80851518 80851536 8.0E-06 AGGTTTGTAGTTCCCGCCT 19 V_ALX4_01_M00619 TRANSFAC + 80850145 80850157 8.0E-06 GCTTAAAATAATC 13 V_ZFX_01_M01593 TRANSFAC - 80851617 80851632 1.0E-05 GTCCAGGCCGCACACC 16 V_EVI1_04_M00081 TRANSFAC - 80850509 80850523 9.0E-06 AAAAAAGAAAGAAAA 15 V_GATA3_03_M00351 TRANSFAC + 80850354 80850363 8.0E-06 AAAGATTTAA 10 V_POU5F1_02_M02245 TRANSFAC - 80849987 80850001 6.0E-06 TATTGGTATGCAATT 15 V_HOXA13_02_M01297 TRANSFAC - 80850503 80850511 4.0E-06 AAATAAAAA 9 V_CBF_02_M01080 TRANSFAC - 80850361 80850376 3.0E-06 TGAACTGCGGTCATTA 16 V_MEF2_02_M00231 TRANSFAC - 80849801 80849822 6.0E-06 CTCAAATCTTAATATAGTAAAC 22 V_IRF_Q6_01_M00972 TRANSFAC - 80850496 80850506 1.0E-06 AAAAGTGAAAT 11 V_IRF_Q6_01_M00972 TRANSFAC - 80850513 80850523 5.0E-06 AAAAAAGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC - 80850820 80850830 1.0E-06 AAAAGTGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC - 80850493 80850508 6.0E-06 TAAAAAGTGAAATGTG 16 V_IRF2_Q6_M01882 TRANSFAC - 80850510 80850525 3.0E-06 CAAAAAAAGAAAGAAA 16 V_IRF2_Q6_M01882 TRANSFAC - 80850817 80850832 7.0E-06 ATAAAAGTGAAATGTG 16 V_FOXO3A_Q1_M01137 TRANSFAC - 80850503 80850514 8.0E-06 AGAAAATAAAAA 12 V_GLI1_01_M01702 TRANSFAC - 80851208 80851218 1.0E-05 GCCCACCCAAG 11 V_CEBP_Q2_M00190 TRANSFAC + 80850140 80850153 1.0E-06 ACATTGCTTAAAAT 14 V_HNF3_Q6_01_M01012 TRANSFAC + 80850498 80850515 5.0E-06 TTCACTTTTTATTTTCTT 18 V_HNF3_Q6_01_M01012 TRANSFAC + 80850502 80850519 1.0E-06 CTTTTTATTTTCTTTCTT 18 V_FOXJ1_03_M02750 TRANSFAC + 80849936 80849951 6.0E-06 GCAATAAACACAATGT 16 V_PITX2_Q6_M02114 TRANSFAC - 80850783 80850792 1.0E-06 TGTAATCCCA 10 V_HTF_01_M00538 TRANSFAC - 80846695 80846718 1.0E-05 TCATAATACCACGTAACTCTTGTT 24 V_HNF4A_04_M02764 TRANSFAC + 80850003 80850019 1.0E-05 AAGGAGAGGTCAATTAT 17 V_PU1_Q4_M01172 TRANSFAC + 80850057 80850075 3.0E-06 TTCCTCAGTTTCCCCTTTT 19 V_SOX21_03_M02803 TRANSFAC + 80849832 80849847 6.0E-06 CATAAAAATAATTGGT 16 V_SOX21_03_M02803 TRANSFAC - 80849832 80849847 8.0E-06 ACCAATTATTTTTATG 16 V_HBP1_Q2_M01661 TRANSFAC + 80850379 80850387 8.0E-06 TTCAATCAG 9 V_MEF2A_Q6_M02024 TRANSFAC - 80850145 80850154 2.0E-06 TATTTTAAGC 10 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 80850736 80850750 7.0E-06 TGGGGTCAGGAGTTC 15 V_GLI3_02_M01704 TRANSFAC - 80851208 80851218 9.0E-06 GCCCACCCAAG 11 V_CRX_Q4_M00623 TRANSFAC - 80851692 80851704 6.0E-06 TTATTAAGCCCAT 13 V_IPF1_Q4_M00436 TRANSFAC - 80850162 80850173 6.0E-06 GAAATAATGTCC 12 V_IPF1_Q4_M00436 TRANSFAC + 80850357 80850368 0.0E+00 GATTTAATGACC 12 V_OCT1_02_M00136 TRANSFAC - 80849784 80849798 7.0E-06 TTGTATATTCATAAA 15 V_ZFP105_03_M02827 TRANSFAC - 80850500 80850514 3.0E-06 AGAAAATAAAAAGTG 15 V_SOX8_04_M02912 TRANSFAC - 80849781 80849794 7.0E-06 ATATTCATAAACCA 14 V_NFAT_Q6_M00302 TRANSFAC - 80854597 80854608 6.0E-06 CACTGGAAAACT 12 V_NKX26_01_M01322 TRANSFAC + 80850037 80850052 7.0E-06 GCTTCCACTTAACTTC 16 V_POLY_C_M00212 TRANSFAC - 80850348 80850365 7.0E-06 CATTAAATCTTTTATGTC 18 V_POLY_C_M00212 TRANSFAC + 80850843 80850860 6.0E-06 CAGTAAACTCTTTCGCAA 18 V_E12_Q6_M00693 TRANSFAC + 80854612 80854622 4.0E-06 GGCAGGTGTCA 11 V_HOXD12_01_M01380 TRANSFAC - 80850355 80850371 8.0E-06 TGCGGTCATTAAATCTT 17 V_HOXB9_01_M01426 TRANSFAC - 80850355 80850370 9.0E-06 GCGGTCATTAAATCTT 16 V_IRF3_Q3_M01279 TRANSFAC + 80850061 80850073 9.0E-06 TCAGTTTCCCCTT 13 V_CDX2_01_M01449 TRANSFAC - 80850356 80850371 6.0E-06 TGCGGTCATTAAATCT 16 V_IRF_Q6_M00772 TRANSFAC + 80849761 80849775 9.0E-06 TAATGTTTCATTTAT 15 V_IRF_Q6_M00772 TRANSFAC + 80850509 80850523 1.0E-06 TTTTCTTTCTTTTTT 15 V_LHX2_01_M01325 TRANSFAC + 80849835 80849851 3.0E-06 AAAAATAATTGGTGACC 17 V_LEF1_03_M02878 TRANSFAC + 80851452 80851467 5.0E-06 CAAGATCAATAAAGAC 16 V_MEF2_03_M00232 TRANSFAC - 80849801 80849822 3.0E-06 CTCAAATCTTAATATAGTAAAC 22 V_MEF2_03_M00232 TRANSFAC + 80850139 80850160 3.0E-06 AACATTGCTTAAAATAATCCCG 22 V_HOXD11_01_M01434 TRANSFAC - 80850355 80850371 6.0E-06 TGCGGTCATTAAATCTT 17 V_PBX1_01_M00096 TRANSFAC + 80851456 80851464 5.0E-06 ATCAATAAA 9 V_CDX1_01_M01373 TRANSFAC - 80850356 80850371 1.0E-06 TGCGGTCATTAAATCT 16 V_SOX12_04_M02900 TRANSFAC + 80850345 80850360 6.0E-06 ACAGACATAAAAGATT 16 V_MEF2_04_M00233 TRANSFAC + 80850139 80850160 2.0E-06 AACATTGCTTAAAATAATCCCG 22 V_TEF_01_M01305 TRANSFAC + 80850445 80850456 1.0E-06 CACATTCCTCAG 12 V_EBF1_01_M02267 TRANSFAC - 80850399 80850408 5.0E-06 ACTCAAGGGA 10 V_NKX3A_01_M00451 TRANSFAC - 80850130 80850141 7.0E-06 GTTTAAGTATGA 12 V_NKX3A_01_M00451 TRANSFAC + 80850174 80850185 4.0E-06 AAATAAGTACTA 12 V_NKX63_01_M01470 TRANSFAC + 80849834 80849850 9.0E-06 TAAAAATAATTGGTGAC 17 V_HOXD9_Q2_M01834 TRANSFAC + 80850347 80850356 4.0E-06 AGACATAAAA 10 V_EN2_01_M01455 TRANSFAC + 80849835 80849851 7.0E-06 AAAAATAATTGGTGACC 17 V_GCNF_01_M00526 TRANSFAC + 80850367 80850384 4.0E-06 CCGCAGTTCACGTTCAAT 18 V_DLX7_01_M01486 TRANSFAC + 80849834 80849850 7.0E-06 TAAAAATAATTGGTGAC 17 V_DLX7_01_M01486 TRANSFAC - 80850008 80850024 5.0E-06 TCCAGATAATTGACCTC 17 V_MTF1_06_M02882 TRANSFAC - 80850510 80850523 3.0E-06 AAAAAAGAAAGAAA 14 V_MTF1_06_M02882 TRANSFAC - 80855363 80855376 4.0E-06 TAGTAAGAAAAAAG 14 V_GLI2_01_M01703 TRANSFAC - 80851208 80851218 6.0E-06 GCCCACCCAAG 11 V_POU5F1_01_M01307 TRANSFAC + 80849933 80849942 2.0E-06 AATGCAATAA 10 V_CEBPA_01_M00116 TRANSFAC + 80850140 80850153 1.0E-06 ACATTGCTTAAAAT 14 V_IPF1_05_M01255 TRANSFAC - 80850357 80850368 7.0E-06 GGTCATTAAATC 12 V_HNF1_01_M00132 TRANSFAC - 80850331 80850345 4.0E-06 TGTTAATATCTACAA 15 V_ZSCAN4_04_M02942 TRANSFAC + 80849825 80849840 4.0E-06 TGTCGCACATAAAAAT 16 V_MSX2_01_M01393 TRANSFAC - 80849835 80849851 1.0E-06 GGTCACCAATTATTTTT 17 V_TEF1_Q6_03_M01817 TRANSFAC - 80850446 80850454 3.0E-06 GAGGAATGT 9 V_TCF7_04_M02921 TRANSFAC - 80850167 80850181 3.0E-06 ACTTATTTGAAATAA 15 V_GATA3_01_M00077 TRANSFAC - 80850880 80850888 1.0E-05 GAGATAGTG 9 V_MSX1_02_M01412 TRANSFAC - 80849836 80849851 9.0E-06 GGTCACCAATTATTTT 16 V_NRF2_Q4_M00821 TRANSFAC + 80846737 80846749 6.0E-06 GTGATGAGTCAGG 13 V_PITX2_Q2_M00482 TRANSFAC - 80850782 80850792 1.0E-06 TGTAATCCCAG 11 V_BARX2_01_M01431 TRANSFAC - 80849834 80849849 1.0E-06 TCACCAATTATTTTTA 16 V_BBX_03_M02739 TRANSFAC + 80850168 80850182 8.0E-06 TATTTCAAATAAGTA 15 V_IRF1_Q6_01_M01881 TRANSFAC + 80850494 80850507 1.0E-06 ACATTTCACTTTTT 14 V_IRF1_Q6_01_M01881 TRANSFAC + 80850511 80850524 6.0E-06 TTCTTTCTTTTTTT 14 V_IRF1_Q6_01_M01881 TRANSFAC + 80850818 80850831 2.0E-06 ACATTTCACTTTTA 14 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 80850738 80850752 5.0E-06 CCTGGGGTCAGGAGT 15 V_SOX8_03_M02808 TRANSFAC - 80851451 80851467 6.0E-06 GTCTTTATTGATCTTGA 17 V_NFE2_Q6_M02104 TRANSFAC - 80846734 80846749 1.0E-06 CCTGACTCATCACATC 16 V_SATB1_01_M01232 TRANSFAC - 80850167 80850178 2.0E-06 TATTTGAAATAA 12 V_SATB1_01_M01232 TRANSFAC + 80850181 80850192 7.0E-06 TACTAGTTACAA 12 V_FOXO1_01_M00473 TRANSFAC + 80849938 80849947 7.0E-06 AATAAACACA 10 V_HOXC10_01_M01361 TRANSFAC - 80850356 80850371 8.0E-06 TGCGGTCATTAAATCT 16 V_PIT1_Q6_M00802 TRANSFAC + 80850127 80850144 0.0E+00 ATTTCATACTTAAACATT 18 V_MEF2_01_M00006 TRANSFAC + 80850144 80850159 3.0E-06 TGCTTAAAATAATCCC 16 V_MEF2_01_M00006 TRANSFAC - 80850323 80850338 5.0E-06 ATCTACAAATAAGCCT 16 V_MEF2_01_M00006 TRANSFAC - 80850463 80850478 9.0E-06 CTTTTAAAAAAAGTCT 16 V_ARP1_01_M00155 TRANSFAC + 80850735 80850750 2.0E-06 CGAACTCCTGACCCCA 16 V_LHX4_01_M01421 TRANSFAC - 80849834 80849850 9.0E-06 GTCACCAATTATTTTTA 17 V_HMEF2_Q6_M00406 TRANSFAC - 80850323 80850338 7.0E-06 ATCTACAAATAAGCCT 16 V_HOXA10_01_M01464 TRANSFAC - 80850355 80850370 8.0E-06 GCGGTCATTAAATCTT 16 V_LPOLYA_B_M00318 TRANSFAC + 80851458 80851465 7.0E-06 CAATAAAG 8 V_MAFK_04_M02880 TRANSFAC - 80850495 80850509 4.0E-06 ATAAAAAGTGAAATG 15 V_ZFP128_04_M02932 TRANSFAC + 80849784 80849797 6.0E-06 TTTATGAATATACA 14 V_ZFP128_04_M02932 TRANSFAC - 80849784 80849797 1.0E-06 TGTATATTCATAAA 14 V_HOXD10_01_M01375 TRANSFAC + 80849933 80849949 8.0E-06 AATGCAATAAACACAAT 17 V_HOXD10_01_M01375 TRANSFAC - 80850499 80850515 1.0E-05 AAGAAAATAAAAAGTGA 17 V_TCF11MAFG_01_M00284 TRANSFAC - 80846755 80846776 7.0E-06 CTTTGTTGAGGAAGCATTTCCT 22 V_SOX5_04_M02910 TRANSFAC - 80849804 80849818 8.0E-06 AATCTTAATATAGTA 15 V_ATATA_B_M00311 TRANSFAC + 80855461 80855470 9.0E-06 TTACTTAAGT 10 V_FOXK1_03_M02752 TRANSFAC - 80850502 80850518 9.0E-06 AGAAAGAAAATAAAAAG 17 V_GBX1_01_M01371 TRANSFAC - 80848590 80848606 5.0E-06 AATGACTAATTGTAGGA 17 V_GBX1_01_M01371 TRANSFAC - 80849835 80849851 2.0E-06 GGTCACCAATTATTTTT 17 V_SMAD1_01_M01590 TRANSFAC - 80850511 80850522 2.0E-06 AAAAAGAAAGAA 12 V_PAX6_01_M00097 TRANSFAC - 80850124 80850144 4.0E-06 AATGTTTAAGTATGAAATCAT 21 V_SOX14_03_M02798 TRANSFAC - 80849832 80849847 8.0E-06 ACCAATTATTTTTATG 16 V_NANOG_02_M01247 TRANSFAC - 80850507 80850526 0.0E+00 TCAAAAAAAGAAAGAAAATA 20 V_HOXC9_01_M01416 TRANSFAC - 80850356 80850371 2.0E-06 TGCGGTCATTAAATCT 16 V_OCT4_01_M01125 TRANSFAC + 80850072 80850086 1.0E-05 TTTTGTAAAGTAGAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.