Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C3orf20 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 84077 chromosome 3 open reading frame 20 chr3 + 14711605 - 14717105 14716605 Transcription Factor Binding Sites   Download all TFBS in the C3orf20 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 14715446 14715464 0.0E+00 TATCCAGCAGATGGCATTA 19 SOX10_HMG_full_dimeric_14_1 SELEX - 14719701 14719714 2.0E-06 TGAATGCTCAGTAA 14 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 14715470 14715480 4.0E-06 CTTAAATGTCA 11 Esrrb_MA0141.1 JASPAR + 14719835 14719846 1.0E-06 GGCTCAAGGTCA 12 SOX8_HMG_DBD_dimeric_14_1 SELEX - 14719701 14719714 9.0E-06 TGAATGCTCAGTAA 14 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX + 14719838 14719847 3.0E-06 TCAAGGTCAC 10 SOX9_HMG_full_dimeric_16_3 SELEX - 14719700 14719715 7.0E-06 TTGAATGCTCAGTAAT 16 Lhx3_MA0135.1 JASPAR - 14715518 14715530 8.0E-06 AGATTTATTTTTT 13 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX + 14719837 14719847 5.0E-06 CTCAAGGTCAC 11 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX + 14719838 14719848 1.0E-06 TCAAGGTCACA 11 CPEB1_RRM_full_monomeric_8_1 SELEX + 14715515 14715522 4.0E-06 AATAAAAA 8 IRF3_IRF_full_trimeric_21_1 SELEX - 14715363 14715383 6.0E-06 CTGGATCTGAAACAGAAAAGG 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 14715516 14715527 9.0E-06 ATAAAAAATAAA 12 V_HOXA9_01_M01351 TRANSFAC + 14715510 14715526 2.0E-06 ACAGAAATAAAAAATAA 17 V_FOXP1_01_M00987 TRANSFAC - 14715500 14715519 3.0E-06 TTATTTCTGTTGGAGTGTGC 20 V_LEF1_04_M02774 TRANSFAC - 14719819 14719835 2.0E-06 CCAGCCTTTGATCTGTG 17 V_TCFE2A_04_M02927 TRANSFAC - 14718598 14718614 1.0E-06 GAGTCCAGATGTCAGCG 17 V_SOX40_04_M02908 TRANSFAC + 14718636 14718651 5.0E-06 TCTGATTAAAATCAGA 16 V_SOX40_04_M02908 TRANSFAC - 14718636 14718651 5.0E-06 TCTGATTTTAATCAGA 16 V_EVI1_04_M00081 TRANSFAC + 14715512 14715526 8.0E-06 AGAAATAAAAAATAA 15 V_FOXD3_01_M00130 TRANSFAC - 14715514 14715525 9.0E-06 TATTTTTTATTT 12 V_ERR3_Q2_01_M02094 TRANSFAC + 14719836 14719848 3.0E-06 GCTCAAGGTCACA 13 V_LRH1_Q5_01_M02098 TRANSFAC + 14719836 14719846 2.0E-06 GCTCAAGGTCA 11 V_HOXA13_02_M01297 TRANSFAC + 14715514 14715522 4.0E-06 AAATAAAAA 9 V_SOX11_04_M02899 TRANSFAC - 14719691 14719704 1.0E-06 GTAATTGTTAGGTA 14 V_PITX2_Q6_M02114 TRANSFAC + 14715543 14715552 1.0E-06 TGTAATCCCA 10 V_GM497_04_M02864 TRANSFAC - 14719723 14719738 6.0E-06 GTCAGCACACACGCAG 16 V_RHOX11_02_M01384 TRANSFAC - 14715490 14715506 6.0E-06 AGTGTGCTGTTTTAAGA 17 V_FOXA2_02_M02853 TRANSFAC + 14715512 14715526 4.0E-06 AGAAATAAAAAATAA 15 V_ZFP105_03_M02827 TRANSFAC + 14715512 14715526 2.0E-06 AGAAATAAAAAATAA 15 V_ZFP105_03_M02827 TRANSFAC + 14715515 14715529 6.0E-06 AATAAAAAATAAATC 15 V_SOX1_04_M02906 TRANSFAC - 14719692 14719706 2.0E-06 CAGTAATTGTTAGGT 15 V_IK1_01_M00086 TRANSFAC + 14719805 14719817 1.0E-05 CATTGGGAACATC 13 V_HNF1_Q6_01_M01011 TRANSFAC + 14715512 14715532 1.0E-06 AGAAATAAAAAATAAATCTGT 21 V_MEF2_04_M00233 TRANSFAC + 14715484 14715505 8.0E-06 CCATACTCTTAAAACAGCACAC 22 V_DAX1_01_M01248 TRANSFAC + 14719833 14719852 2.0E-06 TGGGCTCAAGGTCACATTGC 20 V_ARID3A_04_M02735 TRANSFAC - 14718632 14718648 3.0E-06 GATTTTAATCAGAAATA 17 V_ARID3A_04_M02735 TRANSFAC + 14718633 14718649 8.0E-06 ATTTCTGATTAAAATCA 17 V_TBP_06_M02814 TRANSFAC - 14715511 14715526 5.0E-06 TTATTTTTTATTTCTG 16 V_CTCF_02_M01259 TRANSFAC + 14715443 14715462 2.0E-06 GTGTATCCAGCAGATGGCAT 20 V_OCT4_02_M01124 TRANSFAC + 14715366 14715380 4.0E-06 TTTCTGTTTCAGATC 15 V_OCT4_02_M01124 TRANSFAC + 14718634 14718648 2.0E-06 TTTCTGATTAAAATC 15 V_CTCF_01_M01200 TRANSFAC + 14715445 14715464 3.0E-06 GTATCCAGCAGATGGCATTA 20 V_SF1_Q6_01_M01132 TRANSFAC - 14719838 14719846 3.0E-06 TGACCTTGA 9 V_MTF1_06_M02882 TRANSFAC + 14715512 14715525 1.0E-05 AGAAATAAAAAATA 14 V_MTF1_06_M02882 TRANSFAC + 14715514 14715527 0.0E+00 AAATAAAAAATAAA 14 V_CEBPA_01_M00116 TRANSFAC + 14719846 14719859 1.0E-06 ACATTGCCTAAACA 14 V_GATA1_04_M00128 TRANSFAC - 14718618 14718630 3.0E-06 TTCTGATAAGGGC 13 V_LUN1_01_M00480 TRANSFAC + 14715548 14715564 3.0E-06 TCCCAGCTACTTGGGAG 17 V_ERR1_Q2_M00511 TRANSFAC + 14719835 14719848 3.0E-06 GGCTCAAGGTCACA 14 V_ERR2_01_M01589 TRANSFAC + 14719838 14719849 1.0E-06 TCAAGGTCACAT 12 V_RHOX11_05_M03099 TRANSFAC - 14715490 14715506 6.0E-06 AGTGTGCTGTTTTAAGA 17 V_MSX1_01_M00394 TRANSFAC - 14719698 14719706 7.0E-06 CAGTAATTG 9 V_PITX2_Q2_M00482 TRANSFAC + 14715543 14715553 1.0E-06 TGTAATCCCAG 11 V_ESRRA_03_M02748 TRANSFAC + 14719835 14719851 7.0E-06 GGCTCAAGGTCACATTG 17 V_SOX8_03_M02808 TRANSFAC - 14719691 14719707 8.0E-06 TCAGTAATTGTTAGGTA 17 V_SRF_06_M02916 TRANSFAC + 14715510 14715526 7.0E-06 ACAGAAATAAAAAATAA 17 V_SRF_06_M02916 TRANSFAC + 14715513 14715529 5.0E-06 GAAATAAAAAATAAATC 17 V_SRF_06_M02916 TRANSFAC + 14715514 14715530 7.0E-06 AAATAAAAAATAAATCT 17 V_PIT1_Q6_M00802 TRANSFAC + 14715466 14715483 5.0E-06 AATTCTTAAATGTCAGCT 18 V_GATA5_03_M02756 TRANSFAC - 14718616 14718632 4.0E-06 ACTTCTGATAAGGGCAG 17 V_MYCMAX_03_M00615 TRANSFAC + 14719790 14719809 6.0E-06 AGTGTCACACGTGGCCATTG 20 V_MYCMAX_03_M00615 TRANSFAC - 14719790 14719809 6.0E-06 CAATGGCCACGTGTGACACT 20 V_HOXA10_01_M01464 TRANSFAC + 14715510 14715525 6.0E-06 ACAGAAATAAAAAATA 16 V_SOX5_07_M02909 TRANSFAC - 14719691 14719707 1.0E-06 TCAGTAATTGTTAGGTA 17 V_TCF3_05_M02920 TRANSFAC + 14715510 14715524 4.0E-06 ACAGAAATAAAAAAT 15 V_BRCA_01_M01082 TRANSFAC - 14715508 14715515 1.0E-05 TTCTGTTG 8

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.