Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TTC29 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 83894 tetratricopeptide repeat domain 29 chr4 - 147866534 - 147872034 147867034 Transcription Factor Binding Sites   Download all TFBS in the TTC29 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX - 147870933 147870948 6.0E-06 CACAATTTCCATTGTT 16 SOX9_HMG_full_dimeric_16_1 SELEX - 147870933 147870948 1.0E-06 CACAATTTCCATTGTT 16 SOX8_HMG_DBD_dimeric_16_1 SELEX - 147870933 147870948 1.0E-06 CACAATTTCCATTGTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX + 147870933 147870948 1.0E-06 AACAATGGAAATTGTG 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 147870933 147870948 0.0E+00 CACAATTTCCATTGTT 16 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 147870798 147870809 8.0E-06 GCTAAAAACAGA 12 SOX8_HMG_full_dimeric_13_1 SELEX + 147870820 147870832 3.0E-06 ATGGATTGCATTC 13 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 147870922 147870936 9.0E-06 GTTAAATTTTTAACA 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 147870922 147870936 8.0E-06 TGTTAAAAATTTAAC 15 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 147870954 147870967 3.0E-06 TAGGCATATTCAGA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 147870954 147870967 3.0E-06 TCTGAATATGCCTA 14 SRY_MA0084.1 JASPAR + 147870930 147870938 5.0E-06 TTTAACAAT 9 NFATC1_NFAT_full_dimeric_15_1 SELEX - 147870929 147870943 8.0E-06 TTTCCATTGTTAAAA 15 SOX7_HMG_full_dimeric_16_1 SELEX + 147870933 147870948 0.0E+00 AACAATGGAAATTGTG 16 SOX7_HMG_full_dimeric_16_1 SELEX - 147870933 147870948 0.0E+00 CACAATTTCCATTGTT 16 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 147870943 147870963 5.0E-06 ATTGTGCTATCTAGGCATATT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 147870943 147870963 7.0E-06 AATATGCCTAGATAGCACAAT 21 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 147870923 147870935 8.0E-06 GTTAAAAATTTAA 13 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 147867255 147867269 5.0E-06 AAGAAATGAAAGTGG 15 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 147866169 147866178 9.0E-06 GTCACGTGAA 10 MAFG_bZIP_full_dimeric_21_1 SELEX + 147870943 147870963 5.0E-06 ATTGTGCTATCTAGGCATATT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 147870943 147870963 5.0E-06 AATATGCCTAGATAGCACAAT 21 SOX21_HMG_DBD_dimeric_16_1 SELEX + 147870933 147870948 0.0E+00 AACAATGGAAATTGTG 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 147870933 147870948 1.0E-06 CACAATTTCCATTGTT 16 MLX_bHLH_full_dimeric_10_1 SELEX + 147866169 147866178 9.0E-06 TTCACGTGAC 10 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 147870922 147870936 9.0E-06 TGTTAAAAATTTAAC 15 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 147866169 147866178 8.0E-06 TTCACGTGAC 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 147866169 147866178 6.0E-06 GTCACGTGAA 10 HNF1A_MA0046.1 JASPAR + 147870921 147870934 4.0E-06 GGTTAAATTTTTAA 14 HNF1A_MA0046.1 JASPAR - 147870923 147870936 6.0E-06 TGTTAAAAATTTAA 14 V_DMRT4_01_M01149 TRANSFAC - 147867249 147867261 5.0E-06 AAAGTGGCAAATT 13 V_DBX1_01_M01483 TRANSFAC + 147870924 147870940 7.0E-06 TAAATTTTTAACAATGG 17 V_SOX30_03_M02804 TRANSFAC + 147870929 147870944 0.0E+00 TTTTAACAATGGAAAT 16 V_ARNT_02_M00539 TRANSFAC + 147866164 147866183 2.0E-06 CATATTTCACGTGACTTACA 20 V_ARNT_02_M00539 TRANSFAC - 147866164 147866183 2.0E-06 TGTAAGTCACGTGAAATATG 20 V_HMGIY_Q3_M01010 TRANSFAC + 147867288 147867302 1.0E-05 AATGCTTTTTCTTCA 15 V_HMGIY_Q3_M01010 TRANSFAC - 147871030 147871044 1.0E-06 AGGGGAATTTTCTGA 15 V_CBF_02_M01080 TRANSFAC + 147870913 147870928 4.0E-06 AACCTAGTGGTTAAAT 16 V_IRF_Q6_01_M00972 TRANSFAC - 147867258 147867268 6.0E-06 AGAAATGAAAG 11 V_SRY_02_M00160 TRANSFAC + 147870930 147870941 5.0E-06 TTTAACAATGGA 12 V_IRF2_Q6_M01882 TRANSFAC - 147867255 147867270 4.0E-06 AAAGAAATGAAAGTGG 16 V_IRF2_Q6_M01882 TRANSFAC - 147867299 147867314 3.0E-06 ACAAAAGAGAAATGAA 16 V_NFAT2_01_M01748 TRANSFAC + 147870937 147870945 5.0E-06 ATGGAAATT 9 V_OCT2_02_M01761 TRANSFAC - 147870956 147870965 4.0E-06 TGAATATGCC 10 V_HNF1_C_M00206 TRANSFAC + 147870921 147870937 0.0E+00 GGTTAAATTTTTAACAA 17 V_COMP1_01_M00057 TRANSFAC - 147867274 147867297 9.0E-06 AAAAAGCATTGAGAATGCAAGGCC 24 V_GC_01_M00255 TRANSFAC + 147867114 147867127 4.0E-06 TGGGGGCGGAGTCT 14 V_GC_01_M00255 TRANSFAC + 147867131 147867144 9.0E-06 GAGGGGTGGAGCTT 14 V_SOX7_03_M02807 TRANSFAC + 147870926 147870947 0.0E+00 AATTTTTAACAATGGAAATTGT 22 V_CEBPE_Q6_M01868 TRANSFAC + 147870834 147870847 3.0E-06 CAAGATTGCCTCAT 14 V_HNF1_Q6_M00790 TRANSFAC + 147870921 147870938 7.0E-06 GGTTAAATTTTTAACAAT 18 V_RSRFC4_Q2_M00407 TRANSFAC - 147870795 147870811 7.0E-06 AAGCTAAAAACAGAAGA 17 V_IK1_01_M00086 TRANSFAC - 147870826 147870838 5.0E-06 TCTTGGGAATGCA 13 V_IRF_Q6_M00772 TRANSFAC + 147867254 147867268 0.0E+00 GCCACTTTCATTTCT 15 V_HNF1_Q6_01_M01011 TRANSFAC - 147870918 147870938 5.0E-06 ATTGTTAAAAATTTAACCACT 21 V_HNF1_Q6_01_M01011 TRANSFAC - 147870919 147870939 1.0E-05 CATTGTTAAAAATTTAACCAC 21 V_BCL6_Q3_M01171 TRANSFAC + 147868176 147868185 8.0E-06 CTTTCTAGGT 10 V_MEF2_03_M00232 TRANSFAC - 147870794 147870815 1.0E-05 AGTGAAGCTAAAAACAGAAGAA 22 V_SOX18_03_M02801 TRANSFAC - 147870927 147870942 0.0E+00 TTCCATTGTTAAAAAT 16 V_NFE4_Q5_M02105 TRANSFAC - 147867126 147867137 5.0E-06 ACCCCTCGCCAG 12 V_OCT1_04_M00138 TRANSFAC + 147870929 147870951 6.0E-06 TTTTAACAATGGAAATTGTGCTA 23 V_MEF2_04_M00233 TRANSFAC - 147870794 147870815 2.0E-06 AGTGAAGCTAAAAACAGAAGAA 22 V_SPIB_01_M01204 TRANSFAC + 147870904 147870920 5.0E-06 CAAATGGGGAACCTAGT 17 V_BBX_04_M02843 TRANSFAC - 147870924 147870940 6.0E-06 CCATTGTTAAAAATTTA 17 V_SMAD4_Q6_M00733 TRANSFAC - 147865076 147865090 7.0E-06 CTGGGTCAGTCACCT 15 V_SOX11_03_M02795 TRANSFAC + 147870928 147870944 1.0E-06 TTTTTAACAATGGAAAT 17 V_SOX9_B1_M00410 TRANSFAC + 147870929 147870942 1.0E-06 TTTTAACAATGGAA 14 V_ICSBP_Q6_M00699 TRANSFAC - 147867256 147867267 1.0E-06 GAAATGAAAGTG 12 V_FOXO1_Q5_M01216 TRANSFAC - 147870798 147870806 1.0E-05 AAAAACAGA 9 V_HBP1_04_M02866 TRANSFAC - 147870929 147870945 6.0E-06 AATTTCCATTGTTAAAA 17 V_FXR_IR1_Q6_M00767 TRANSFAC + 147865076 147865088 2.0E-06 AGGTGACTGACCC 13 V_SOX15_03_M02799 TRANSFAC + 147870928 147870944 1.0E-06 TTTTTAACAATGGAAAT 17 V_MTF1_06_M02882 TRANSFAC - 147867291 147867304 9.0E-06 AATGAAGAAAAAGC 14 V_STRA13_01_M00985 TRANSFAC + 147866167 147866180 6.0E-06 ATTTCACGTGACTT 14 V_HNF1_01_M00132 TRANSFAC + 147870921 147870935 5.0E-06 GGTTAAATTTTTAAC 15 V_HNF1_01_M00132 TRANSFAC - 147870922 147870936 8.0E-06 TGTTAAAAATTTAAC 15 V_LUN1_01_M00480 TRANSFAC + 147867096 147867112 4.0E-06 TCCCAGACTCTTCGGGC 17 V_CBF_01_M01079 TRANSFAC + 147870913 147870928 2.0E-06 AACCTAGTGGTTAAAT 16 V_RSRFC4_01_M00026 TRANSFAC + 147870796 147870811 6.0E-06 CTTCTGTTTTTAGCTT 16 V_NFAT2_02_M01749 TRANSFAC + 147867019 147867029 9.0E-06 CTCCACGGAAA 11 V_OCT1_07_M00248 TRANSFAC + 147870934 147870945 4.0E-06 ACAATGGAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 147867256 147867269 3.0E-06 CACTTTCATTTCTT 14 V_IRF1_Q6_01_M01881 TRANSFAC + 147867300 147867313 8.0E-06 TCATTTCTCTTTTG 14 V_TBX22_01_M01195 TRANSFAC + 147867242 147867260 0.0E+00 AGGCTCGAATTTGCCACTT 19 V_SOX8_03_M02808 TRANSFAC - 147870928 147870944 2.0E-06 ATTTCCATTGTTAAAAA 17 V_SOX12_03_M02796 TRANSFAC - 147870927 147870940 5.0E-06 CCATTGTTAAAAAT 14 V_GATA5_03_M02756 TRANSFAC - 147870863 147870879 7.0E-06 TCTTTTGATAAGATGTA 17 V_GATA6_04_M02757 TRANSFAC - 147870863 147870879 2.0E-06 TCTTTTGATAAGATGTA 17 V_HNF1A_01_M02162 TRANSFAC + 147870921 147870934 4.0E-06 GGTTAAATTTTTAA 14 V_HNF1A_01_M02162 TRANSFAC - 147870923 147870936 6.0E-06 TGTTAAAAATTTAA 14 V_BHLHB2_04_M02845 TRANSFAC + 147870809 147870831 7.0E-06 CTTCACTGCACATGGATTGCATT 23 V_PAX4_04_M00380 TRANSFAC - 147870777 147870806 9.0E-06 AAAAACAGAAGAAACTAGGAATCTGACACC 30 V_NANOG_02_M01247 TRANSFAC + 147870869 147870888 7.0E-06 TTATCAAAAGAAAGCCTGCA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.