Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ATG10 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 83734 autophagy related 10 chr5 + 81262843 - 81268343 81267843 Transcription Factor Binding Sites   Download all TFBS in the ATG10 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 81267053 81267070 6.0E-06 GAAATAATTATAGACACA 18 SOX10_HMG_full_dimeric_15_3 SELEX - 81271237 81271251 9.0E-06 CTGAATCACAGGCAT 15 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 81267055 81267064 2.0E-06 AATAATTATA 10 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 81267055 81267064 8.0E-06 TATAATTATT 10 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 81267029 81267045 3.0E-06 CCTTTTAAAAACACTTA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 81267052 81267068 3.0E-06 GGAAATAATTATAGACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 81272588 81272599 9.0E-06 GATATAAATAAC 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 81264521 81264533 6.0E-06 TTTATATAATTTA 13 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 81267046 81267063 8.0E-06 TTATTTGGAAATAATTAT 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 81267046 81267063 4.0E-06 ATAATTATTTCCAAATAA 18 IRX2_homeodomain_DBD_dimeric_12_1 SELEX - 81267173 81267184 3.0E-06 CTACATGACATA 12 FOXO3_MA0157.1 JASPAR - 81267506 81267513 7.0E-06 TGTAAACA 8 TBX20_TBX_DBD_dimeric_19_1 SELEX - 81268366 81268384 8.0E-06 AGGTGTGCTGGTGACACCG 19 CEBPA_MA0102.2 JASPAR - 81271316 81271324 4.0E-06 TTTTGCAAT 9 NFIL3_MA0025.1 JASPAR + 81264522 81264532 7.0E-06 TTATATAATTT 11 BARX1_homeodomain_DBD_monomeric_8_1 SELEX - 81267496 81267503 5.0E-06 ACAATTAA 8 GATA5_GATA_DBD_monomeric_8_1 SELEX - 81264480 81264487 7.0E-06 AGATAAGA 8 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 81272588 81272599 4.0E-06 GATATAAATAAC 12 XBP1_bZIP_DBD_dimeric_12_1 SELEX + 81267794 81267805 6.0E-06 GATCACGTCACC 12 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 81267794 81267805 4.0E-06 GGTGACGTGATC 12 GATA4_GATA_DBD_monomeric_8_1 SELEX - 81264480 81264487 7.0E-06 AGATAAGA 8 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 81267030 81267045 2.0E-06 TAAGTGTTTTTAAAAG 16 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 81267055 81267064 3.0E-06 AATAATTATA 10 LEF1_HMG_DBD_monomeric_15_1 SELEX + 81267159 81267173 8.0E-06 CAAGATCAAAAAACT 15 MEF2B_MADS_full_dimeric_12_1 SELEX - 81272588 81272599 1.0E-05 GATATAAATAAC 12 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 81267030 81267045 2.0E-06 TAAGTGTTTTTAAAAG 16 E2F8_E2F_DBD_dimeric_12_1 SELEX - 81268226 81268237 8.0E-06 TTTCCCGCCTAC 12 MEF2A_MA0052.1 JASPAR + 81272589 81272598 1.0E-05 TTATTTATAT 10 FOXI1_MA0042.1 JASPAR + 81272587 81272598 3.0E-06 AGTTATTTATAT 12 znf143_MA0088.1 JASPAR + 81267978 81267997 2.0E-06 GCAGTCCCATCATTCAGTTC 20 SP4_C2H2_full_monomeric_17_1 SELEX - 81267673 81267689 7.0E-06 AAGGCCCCGCCCCTCGC 17 CREB3_bZIP_full_dimeric_14_1 SELEX - 81267793 81267806 1.0E-05 CGGTGACGTGATCG 14 Tcf7_HMG_DBD_monomeric_12_1 SELEX + 81267159 81267170 8.0E-06 CAAGATCAAAAA 12 Gata1_MA0035.2 JASPAR - 81264479 81264489 0.0E+00 AGAGATAAGAA 11 GATA3_GATA_full_monomeric_8_1 SELEX - 81264480 81264487 7.0E-06 AGATAAGA 8 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 81267046 81267063 8.0E-06 ATAATTATTTCCAAATAA 18 TBX15_TBX_DBD_dimeric_19_1 SELEX - 81268366 81268384 7.0E-06 AGGTGTGCTGGTGACACCG 19 Evi1_MA0029.1 JASPAR - 81264529 81264542 3.0E-06 AGGAAAAGATAAAT 14 POU3F1_POU_DBD_monomeric_12_2 SELEX + 81264522 81264533 6.0E-06 TTATATAATTTA 12 POU3F1_POU_DBD_monomeric_12_2 SELEX - 81264523 81264534 8.0E-06 ATAAATTATATA 12 FOXI1_forkhead_full_dimeric_17_1 SELEX - 81267519 81267535 8.0E-06 ATGCTTACGCTACAAAA 17 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 81267046 81267063 5.0E-06 ATAATTATTTCCAAATAA 18 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 81267055 81267064 5.0E-06 AATAATTATA 10 BATF3_bZIP_DBD_dimeric_14_1 SELEX - 81267793 81267806 6.0E-06 CGGTGACGTGATCG 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 81267384 81267396 5.0E-06 GAAAAAAAAAAAA 13 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 81267173 81267184 0.0E+00 CTACATGACATA 12 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 81267056 81267063 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 81267056 81267063 4.0E-06 ATAATTAT 8 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 81267173 81267184 2.0E-06 CTACATGACATA 12 V_LEF1_04_M02774 TRANSFAC - 81267158 81267174 9.0E-06 TAGTTTTTTGATCTTGT 17 V_MEQCJUN_02_M02048 TRANSFAC - 81267795 81267805 1.0E-05 GGTGACGTGAT 11 V_HSF1_Q6_M01023 TRANSFAC - 81264542 81264558 2.0E-06 CCTCCAGGAGGTTCTTA 17 V_GATA1_Q6_M02004 TRANSFAC - 81264478 81264492 4.0E-06 GGCAGAGATAAGAAA 15 V_FOXO3_02_M02270 TRANSFAC - 81267506 81267513 7.0E-06 TGTAAACA 8 V_GATA2_02_M00348 TRANSFAC - 81264480 81264489 0.0E+00 AGAGATAAGA 10 V_CEBP_Q3_M00770 TRANSFAC + 81267046 81267057 8.0E-06 TTATTTGGAAAT 12 V_PAX4_03_M00378 TRANSFAC - 81268123 81268134 2.0E-06 AATACTCACCCC 12 V_DLX3_01_M01400 TRANSFAC + 81267051 81267067 0.0E+00 TGGAAATAATTATAGAC 17 V_EVI1_04_M00081 TRANSFAC - 81264522 81264536 1.0E-05 AGATAAATTATATAA 15 V_EVI1_04_M00081 TRANSFAC - 81264527 81264541 1.0E-06 GGAAAAGATAAATTA 15 V_BCL6_01_M01183 TRANSFAC + 81264523 81264538 5.0E-06 TATATAATTTATCTTT 16 V_MMEF2_Q6_M00405 TRANSFAC + 81268429 81268444 9.0E-06 GTGTTTAAAATCCACA 16 V_MMEF2_Q6_M00405 TRANSFAC - 81272587 81272602 3.0E-06 CAGGATATAAATAACT 16 V_SP1_Q6_01_M00931 TRANSFAC + 81267677 81267686 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC - 81272584 81272605 9.0E-06 GAGCAGGATATAAATAACTCCC 22 V_IRF2_Q6_M01882 TRANSFAC - 81267226 81267241 6.0E-06 TTGGAAATGAAAGGAG 16 V_CEBP_01_M00159 TRANSFAC + 81267047 81267059 6.0E-06 TATTTGGAAATAA 13 V_PLAG1_02_M01973 TRANSFAC - 81267682 81267697 1.0E-06 CCCCCGCCAAGGCCCC 16 V_GATA_C_M00203 TRANSFAC - 81264477 81264487 8.0E-06 AGATAAGAAAC 11 V_STAT6_01_M00494 TRANSFAC - 81267051 81267058 7.0E-06 TATTTCCA 8 V_GKLF_02_M01588 TRANSFAC + 81267767 81267778 8.0E-06 GCCCCGCCCTGC 12 V_LHX3A_01_M00510 TRANSFAC + 81267366 81267375 7.0E-06 ATTTAATTTT 10 V_SOX21_03_M02803 TRANSFAC + 81264519 81264534 6.0E-06 CTTTTATATAATTTAT 16 V_SOX21_03_M02803 TRANSFAC - 81264519 81264534 6.0E-06 ATAAATTATATAAAAG 16 V_TCFAP2E_04_M02926 TRANSFAC - 81267329 81267342 2.0E-06 GACTAGAAAAAATG 14 V_TCFAP2E_04_M02926 TRANSFAC - 81267384 81267397 4.0E-06 AGAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 81267385 81267398 8.0E-06 GAGAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 81267388 81267401 7.0E-06 GAGGAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 81272630 81272643 2.0E-06 TTCACAAAAAAAAT 14 V_CDX_Q5_M00991 TRANSFAC - 81267508 81267525 6.0E-06 TACAAAAAGTCCTGTAAA 18 V_CEBPB_01_M00109 TRANSFAC - 81271314 81271327 1.0E-06 GGGTTTTGCAATGT 14 V_NKX62_Q2_M00489 TRANSFAC + 81267053 81267064 1.0E-06 GAAATAATTATA 12 V_MEF2A_Q6_M02024 TRANSFAC + 81272590 81272599 6.0E-06 TATTTATATC 10 V_TAL1_GATA1_01_M02243 TRANSFAC - 81264481 81264498 0.0E+00 TTGGATGGCAGAGATAAG 18 V_RPC155_01_M01798 TRANSFAC + 81271288 81271303 2.0E-06 TGAGGAGTTTGAGACC 16 V_ELF4_04_M02850 TRANSFAC - 81267381 81267397 3.0E-06 AGAAAAAAAAAAAACTA 17 V_ELF4_04_M02850 TRANSFAC - 81267382 81267398 5.0E-06 GAGAAAAAAAAAAAACT 17 V_ELF4_04_M02850 TRANSFAC - 81267383 81267399 3.0E-06 GGAGAAAAAAAAAAAAC 17 V_ELF4_04_M02850 TRANSFAC + 81271332 81271348 5.0E-06 TCTACAAAAAATACAAA 17 V_ELF4_04_M02850 TRANSFAC + 81272628 81272644 4.0E-06 TTTTCACAAAAAAAATT 17 V_ELF4_04_M02850 TRANSFAC + 81272629 81272645 0.0E+00 TTTCACAAAAAAAATTT 17 V_ELF4_04_M02850 TRANSFAC + 81272631 81272647 3.0E-06 TCACAAAAAAAATTTGC 17 V_GC_01_M00255 TRANSFAC + 81267675 81267688 2.0E-06 GAGGGGCGGGGCCT 14 V_TCF3_04_M02816 TRANSFAC + 81267158 81267174 3.0E-06 ACAAGATCAAAAAACTA 17 V_DBX2_01_M01360 TRANSFAC - 81267053 81267068 2.0E-06 TGTCTATAATTATTTC 16 V_CEBPE_Q6_M01868 TRANSFAC + 81271312 81271325 1.0E-06 CAACATTGCAAAAC 14 V_ZFP105_03_M02827 TRANSFAC - 81267381 81267395 2.0E-06 AAAAAAAAAAAACTA 15 V_ZFP105_03_M02827 TRANSFAC - 81267383 81267397 7.0E-06 AGAAAAAAAAAAAAC 15 V_ZFP105_03_M02827 TRANSFAC - 81267384 81267398 8.0E-06 GAGAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 81272632 81272646 6.0E-06 CACAAAAAAAATTTG 15 V_GFI1_01_M00250 TRANSFAC + 81266934 81266957 7.0E-06 ACCAACACAATCACGGTATAGAAG 24 V_CEBPB_02_M00117 TRANSFAC + 81267140 81267153 4.0E-06 ATCTTACACAACTG 14 V_RSRFC4_Q2_M00407 TRANSFAC - 81272585 81272601 8.0E-06 AGGATATAAATAACTCC 17 V_AMEF2_Q6_M00403 TRANSFAC - 81272585 81272602 0.0E+00 CAGGATATAAATAACTCC 18 V_SP1_Q6_M00196 TRANSFAC + 81267675 81267687 1.0E-06 GAGGGGCGGGGCC 13 V_NKX25_02_M00241 TRANSFAC + 81267495 81267502 7.0E-06 CTTAATTG 8 V_IRF_Q6_M00772 TRANSFAC + 81267225 81267239 3.0E-06 TCTCCTTTCATTTCC 15 V_SOX18_03_M02801 TRANSFAC - 81267049 81267064 4.0E-06 TATAATTATTTCCAAA 16 V_ISRE_01_M00258 TRANSFAC + 81264475 81264489 4.0E-06 AAGTTTCTTATCTCT 15 V_HOX13_01_M00023 TRANSFAC + 81267032 81267061 9.0E-06 TTTAAAAACACTTATTATTTGGAAATAATT 30 V_OCT1_04_M00138 TRANSFAC - 81264522 81264544 8.0E-06 TTAGGAAAAGATAAATTATATAA 23 Tal1_Gata1_MA0140.1 JASPAR - 81264481 81264498 0.0E+00 TTGGATGGCAGAGATAAG 18 V_ATF1_Q6_01_M01861 TRANSFAC + 81267796 81267804 4.0E-06 TCACGTCAC 9 V_SOX12_04_M02900 TRANSFAC - 81264516 81264531 8.0E-06 AATTATATAAAAGAGT 16 V_GATA1_09_M02254 TRANSFAC - 81264479 81264489 0.0E+00 AGAGATAAGAA 11 V_TCF7_03_M02817 TRANSFAC + 81267158 81267174 2.0E-06 ACAAGATCAAAAAACTA 17 V_MEF2_Q6_01_M00941 TRANSFAC + 81272587 81272598 5.0E-06 AGTTATTTATAT 12 V_ATF3_Q6_M00513 TRANSFAC - 81267793 81267806 4.0E-06 CGGTGACGTGATCG 14 V_NKX3A_01_M00451 TRANSFAC - 81267037 81267048 3.0E-06 TAATAAGTGTTT 12 V_NKX3A_01_M00451 TRANSFAC - 81267054 81267065 7.0E-06 CTATAATTATTT 12 V_STAF_02_M00264 TRANSFAC + 81267979 81267999 3.0E-06 CAGTCCCATCATTCAGTTCCG 21 V_POU6F1_01_M00465 TRANSFAC + 81264524 81264534 2.0E-06 ATATAATTTAT 11 V_TBP_06_M02814 TRANSFAC + 81264517 81264532 0.0E+00 CTCTTTTATATAATTT 16 V_TBP_06_M02814 TRANSFAC + 81264519 81264534 3.0E-06 CTTTTATATAATTTAT 16 V_TBP_06_M02814 TRANSFAC - 81264519 81264534 1.0E-06 ATAAATTATATAAAAG 16 V_OCT4_02_M01124 TRANSFAC + 81268426 81268440 1.0E-06 TTTGTGTTTAAAATC 15 V_LHX3b_01_M01971 TRANSFAC + 81267366 81267375 5.0E-06 ATTTAATTTT 10 V_ISGF4G_04_M02875 TRANSFAC - 81264528 81264541 8.0E-06 GGAAAAGATAAATT 14 V_SP4_Q5_M01273 TRANSFAC - 81267676 81267686 8.0E-06 GCCCCGCCCCT 11 V_DLX7_01_M01486 TRANSFAC + 81267051 81267067 1.0E-06 TGGAAATAATTATAGAC 17 V_MINI19_B_M00323 TRANSFAC + 81267817 81267837 6.0E-06 GGCGGCCCCCACGGCGCGGGA 21 V_ALPHACP1_01_M00687 TRANSFAC + 81264492 81264502 3.0E-06 CATCCAATCAG 11 V_MTF1_06_M02882 TRANSFAC - 81264519 81264532 7.0E-06 AAATTATATAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 81267384 81267397 3.0E-06 AGAAAAAAAAAAAA 14 V_NFYC_Q5_M02107 TRANSFAC + 81264492 81264505 4.0E-06 CATCCAATCAGATT 14 V_GATA1_01_M00075 TRANSFAC - 81267110 81267119 6.0E-06 GGTGATAGGT 10 V_TAL1_01_M01591 TRANSFAC + 81264477 81264489 2.0E-06 GTTTCTTATCTCT 13 V_CEBPA_01_M00116 TRANSFAC + 81271314 81271327 6.0E-06 ACATTGCAAAACCC 14 V_SMAD4_04_M02898 TRANSFAC - 81267644 81267660 7.0E-06 TCTCCCCCGCCAACCCC 17 V_FOXL1_02_M02857 TRANSFAC - 81267042 81267057 8.0E-06 ATTTCCAAATAATAAG 16 V_SIRT6_01_M01797 TRANSFAC - 81264480 81264487 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC - 81264480 81264489 1.0E-06 AGAGATAAGA 10 V_PLAG1_01_M01778 TRANSFAC + 81267682 81267697 5.0E-06 GGGGCCTTGGCGGGGG 16 V_NKX61_02_M01469 TRANSFAC - 81267053 81267068 7.0E-06 TGTCTATAATTATTTC 16 V_GATA6_01_M00462 TRANSFAC - 81264529 81264538 6.0E-06 AAAGATAAAT 10 V_NFY_01_M00287 TRANSFAC + 81264490 81264505 8.0E-06 GCCATCCAATCAGATT 16 V_NKX22_01_M00485 TRANSFAC - 81267037 81267046 5.0E-06 ATAAGTGTTT 10 V_GATA2_03_M00349 TRANSFAC - 81264480 81264489 0.0E+00 AGAGATAAGA 10 V_SRF_06_M02916 TRANSFAC - 81267380 81267396 0.0E+00 GAAAAAAAAAAAACTAG 17 V_SRF_06_M02916 TRANSFAC - 81267381 81267397 0.0E+00 AGAAAAAAAAAAAACTA 17 V_SRF_06_M02916 TRANSFAC - 81267382 81267398 0.0E+00 GAGAAAAAAAAAAAACT 17 V_SRF_06_M02916 TRANSFAC - 81267383 81267399 0.0E+00 GGAGAAAAAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC - 81267384 81267400 2.0E-06 AGGAGAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 81267385 81267401 6.0E-06 GAGGAGAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 81272629 81272645 1.0E-06 TTTCACAAAAAAAATTT 17 V_HOXD8_01_M01432 TRANSFAC + 81267053 81267069 6.0E-06 GAAATAATTATAGACAC 17 V_HOMEZ_01_M01429 TRANSFAC - 81267164 81267180 5.0E-06 ATGACATAGTTTTTTGA 17 V_SOX2_Q6_M01272 TRANSFAC + 81268420 81268435 6.0E-06 AACTACTTTGTGTTTA 16 V_MEF2_01_M00006 TRANSFAC - 81272585 81272600 3.0E-06 GGATATAAATAACTCC 16 V_SP1_Q2_01_M00933 TRANSFAC - 81267676 81267685 7.0E-06 CCCCGCCCCT 10 V_MEF2A_05_M01301 TRANSFAC + 81272587 81272598 2.0E-06 AGTTATTTATAT 12 V_HMEF2_Q6_M00406 TRANSFAC - 81272585 81272600 1.0E-06 GGATATAAATAACTCC 16 V_SOX5_07_M02909 TRANSFAC - 81264520 81264536 1.0E-05 AGATAAATTATATAAAA 17 V_NFYA_Q5_M02106 TRANSFAC + 81264492 81264505 9.0E-06 CATCCAATCAGATT 14 V_SP1_Q4_01_M00932 TRANSFAC + 81267675 81267687 2.0E-06 GAGGGGCGGGGCC 13 V_TAACC_B_M00331 TRANSFAC - 81267372 81267394 1.0E-05 AAAAAAAAAAACTAGCAGCAAAA 23 V_ELK1_03_M01163 TRANSFAC - 81267919 81267929 1.0E-05 AACCAGAAGTG 11 V_TCF3_05_M02920 TRANSFAC - 81267385 81267399 3.0E-06 GGAGAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 81267386 81267400 0.0E+00 AGGAGAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC - 81267388 81267402 7.0E-06 AGAGGAGAAAAAAAA 15 V_DMRT1_01_M01146 TRANSFAC + 81271309 81271323 9.0E-06 TGGCAACATTGCAAA 15 V_STAT1_05_M01260 TRANSFAC - 81267226 81267247 2.0E-06 AATTTGTTGGAAATGAAAGGAG 22 V_CEBPA_Q6_M01866 TRANSFAC - 81271315 81271327 7.0E-06 GGGTTTTGCAATG 13 V_GATA1_06_M00347 TRANSFAC - 81264480 81264489 3.0E-06 AGAGATAAGA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.