Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CCDC70 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 83446 coiled-coil domain containing 70 chr13 + 52431116 - 52436616 52436116 Transcription Factor Binding Sites   Download all TFBS in the CCDC70 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 52436151 52436159 8.0E-06 GCACTTGAA 9 HSF2_HSF_DBD_trimeric_13_1 SELEX - 52435965 52435977 6.0E-06 TTCCAGATTCTTC 13 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 52433311 52433323 2.0E-06 GTAAAAAAAAAAA 13 SOX9_HMG_full_dimeric_16_1 SELEX + 52433322 52433337 1.0E-05 AAAAATGGTAATTGTT 16 HSF1_HSF_full_trimeric_13_1 SELEX - 52435965 52435977 4.0E-06 TTCCAGATTCTTC 13 SOX8_HMG_DBD_dimeric_16_1 SELEX - 52433322 52433337 5.0E-06 AACAATTACCATTTTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX + 52433322 52433337 0.0E+00 AAAAATGGTAATTGTT 16 SRY_HMG_DBD_dimeric_16_1 SELEX - 52433322 52433337 0.0E+00 AACAATTACCATTTTT 16 STAT1_MA0137.2 JASPAR + 52436026 52436040 9.0E-06 GACTTCCTAGAACCA 15 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 52433311 52433319 8.0E-06 GTAAAAAAA 9 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 52433311 52433324 2.0E-06 GTAAAAAAAAAAAA 14 HSF4_HSF_DBD_trimeric_13_1 SELEX - 52435965 52435977 3.0E-06 TTCCAGATTCTTC 13 SRY_MA0084.1 JASPAR - 52433332 52433340 1.0E-06 TTAAACAAT 9 SOX7_HMG_full_dimeric_16_1 SELEX + 52433322 52433337 0.0E+00 AAAAATGGTAATTGTT 16 SOX7_HMG_full_dimeric_16_1 SELEX - 52433322 52433337 1.0E-06 AACAATTACCATTTTT 16 PRDM4_C2H2_full_monomeric_13_1 SELEX + 52436150 52436162 1.0E-06 TTTCAAGTGCCCC 13 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 52433329 52433343 9.0E-06 GTAATTGTTTAATAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 52433330 52433342 8.0E-06 TATTAAACAATTA 13 Stat3_MA0144.1 JASPAR - 52436028 52436037 7.0E-06 TTCTAGGAAG 10 JDP2_bZIP_full_dimeric_9_1 SELEX - 52436086 52436094 7.0E-06 ATGACTCAC 9 SOX21_HMG_DBD_dimeric_16_1 SELEX + 52433322 52433337 0.0E+00 AAAAATGGTAATTGTT 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 52433322 52433337 4.0E-06 AACAATTACCATTTTT 16 Sox2_MA0143.1 JASPAR - 52436296 52436310 1.0E-05 CCATTGTCATGTCAG 15 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 52433311 52433323 1.0E-06 GTAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 52433313 52433325 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 52433314 52433326 6.0E-06 AAAAAAAAAAAAA 13 NFIA_NFI_full_monomeric_10_1 SELEX + 52437299 52437308 9.0E-06 AGTGCCAAGA 10 SOX9_HMG_full_dimeric_17_1 SELEX - 52433322 52433338 9.0E-06 AAACAATTACCATTTTT 17 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 52433311 52433324 1.0E-06 GTAAAAAAAAAAAA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 52433327 52433340 9.0E-06 TTAAACAATTACCA 14 V_BCL6_Q3_01_M02085 TRANSFAC + 52436028 52436037 2.0E-06 CTTCCTAGAA 10 V_APOLYA_B_M00310 TRANSFAC - 52433244 52433258 3.0E-06 AATAAAGACAAATTC 15 V_AR_02_M00953 TRANSFAC - 52436013 52436039 5.0E-06 GGTTCTAGGAAGTCATGTTCTGGTGGG 27 V_BACH2_01_M00490 TRANSFAC + 52436085 52436095 4.0E-06 TGTGAGTCATC 11 V_SOX30_03_M02804 TRANSFAC - 52433326 52433341 4.0E-06 ATTAAACAATTACCAT 16 V_HMGIY_Q3_M01010 TRANSFAC - 52433313 52433327 1.0E-05 ATTTTTTTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 52433312 52433326 8.0E-06 TAAAAAAAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC - 52433313 52433328 4.0E-06 CATTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 52433317 52433332 4.0E-06 TTACCATTTTTTTTTT 16 V_SATB1_Q3_M01723 TRANSFAC - 52433246 52433261 1.0E-05 TCAAATAAAGACAAAT 16 V_MAFB_03_M02879 TRANSFAC + 52433306 52433320 1.0E-06 CATTTGTAAAAAAAA 15 V_MEIS1AHOXA9_01_M00420 TRANSFAC + 52433215 52433228 1.0E-05 TGGCAGTTCACTGA 14 V_SOX11_04_M02899 TRANSFAC + 52433329 52433342 3.0E-06 GTAATTGTTTAATA 14 V_HNF3_Q6_01_M01012 TRANSFAC + 52433197 52433214 8.0E-06 TTTACTATTTGACCTGTT 18 V_TCFAP2E_04_M02926 TRANSFAC + 52433308 52433321 4.0E-06 TTTGTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433309 52433322 2.0E-06 TTGTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433310 52433323 6.0E-06 TGTAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433311 52433324 1.0E-05 GTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433312 52433325 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433313 52433326 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433314 52433327 3.0E-06 AAAAAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC + 52433315 52433328 5.0E-06 AAAAAAAAAAAATG 14 V_AP1_Q6_M00174 TRANSFAC - 52436085 52436095 1.0E-05 GATGACTCACA 11 V_ELF4_04_M02850 TRANSFAC + 52433307 52433323 7.0E-06 ATTTGTAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 52433308 52433324 1.0E-06 TTTGTAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 52433309 52433325 1.0E-06 TTGTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 52433310 52433326 0.0E+00 TGTAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 52433311 52433327 0.0E+00 GTAAAAAAAAAAAAAAT 17 V_SOX7_03_M02807 TRANSFAC - 52433323 52433344 1.0E-06 GATATTAAACAATTACCATTTT 22 V_FOXA2_02_M02853 TRANSFAC + 52435943 52435957 8.0E-06 CAAACTATCAAAAGC 15 V_HOXA6_01_M01392 TRANSFAC + 52433326 52433341 8.0E-06 ATGGTAATTGTTTAAT 16 V_PR_01_M00954 TRANSFAC - 52436013 52436039 2.0E-06 GGTTCTAGGAAGTCATGTTCTGGTGGG 27 V_ZFP105_03_M02827 TRANSFAC + 52433310 52433324 0.0E+00 TGTAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 52433311 52433325 3.0E-06 GTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 52433312 52433326 0.0E+00 TAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 52433313 52433327 0.0E+00 AAAAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC + 52433314 52433328 1.0E-06 AAAAAAAAAAAAATG 15 V_ZFP105_03_M02827 TRANSFAC + 52433315 52433329 1.0E-06 AAAAAAAAAAAATGG 15 V_HNF1_Q6_M00790 TRANSFAC + 52433327 52433344 8.0E-06 TGGTAATTGTTTAATATC 18 V_XFD3_01_M00269 TRANSFAC + 52433308 52433321 7.0E-06 TTTGTAAAAAAAAA 14 V_MRF2_01_M00454 TRANSFAC + 52435916 52435929 6.0E-06 AACCTCAAGACCAA 14 V_STAT5A_02_M00460 TRANSFAC - 52436014 52436037 9.0E-06 TTCTAGGAAGTCATGTTCTGGTGG 24 V_BCL6_Q3_M01171 TRANSFAC - 52436030 52436039 5.0E-06 GGTTCTAGGA 10 V_SOX18_03_M02801 TRANSFAC + 52433328 52433343 6.0E-06 GGTAATTGTTTAATAT 16 V_JUNDM2_04_M02876 TRANSFAC + 52436082 52436097 2.0E-06 ACTTGTGAGTCATCAA 16 V_JUNDM2_04_M02876 TRANSFAC - 52436083 52436098 0.0E+00 GTTGATGACTCACAAG 16 V_OCT1_04_M00138 TRANSFAC + 52433318 52433340 3.0E-06 AAAAAAAAATGGTAATTGTTTAA 23 V_GR_01_M00955 TRANSFAC - 52436013 52436039 4.0E-06 GGTTCTAGGAAGTCATGTTCTGGTGGG 27 V_MEF2_04_M00233 TRANSFAC + 52433304 52433325 8.0E-06 GGCATTTGTAAAAAAAAAAAAA 22 V_NCX_02_M01420 TRANSFAC + 52433330 52433346 1.0E-06 TAATTGTTTAATATCAT 17 V_AP1_01_M00517 TRANSFAC + 52436084 52436096 7.0E-06 TTGTGAGTCATCA 13 V_STAT3_03_M01595 TRANSFAC - 52436024 52436039 7.0E-06 GGTTCTAGGAAGTCAT 16 V_NR1B1_Q6_M02110 TRANSFAC - 52433204 52433213 9.0E-06 ACAGGTCAAA 10 V_AP1_Q4_01_M00926 TRANSFAC + 52436087 52436094 1.0E-05 TGAGTCAT 8 V_S8_01_M00099 TRANSFAC - 52433326 52433341 9.0E-06 ATTAAACAATTACCAT 16 V_SOX15_03_M02799 TRANSFAC - 52433326 52433342 1.0E-06 TATTAAACAATTACCAT 17 V_MTF1_06_M02882 TRANSFAC + 52433312 52433325 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 52433313 52433326 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 52433315 52433328 3.0E-06 AAAAAAAAAAAATG 14 V_FAC1_01_M00456 TRANSFAC + 52433313 52433326 3.0E-06 AAAAAAAAAAAAAA 14 V_HNF1_01_M00132 TRANSFAC + 52433328 52433342 4.0E-06 GGTAATTGTTTAATA 15 V_FRA1_Q5_M01267 TRANSFAC + 52436087 52436094 1.0E-05 TGAGTCAT 8 V_BBX_03_M02739 TRANSFAC + 52433218 52433232 1.0E-05 CAGTTCACTGAAAAG 15 V_BBX_03_M02739 TRANSFAC - 52433218 52433232 7.0E-06 CTTTTCAGTGAACTG 15 V_OCT1_07_M00248 TRANSFAC + 52433323 52433334 3.0E-06 AAAATGGTAATT 12 V_SOX8_03_M02808 TRANSFAC + 52433326 52433342 5.0E-06 ATGGTAATTGTTTAATA 17 V_SOX2_01_M02246 TRANSFAC - 52436296 52436310 1.0E-05 CCATTGTCATGTCAG 15 V_SRF_06_M02916 TRANSFAC + 52433307 52433323 1.0E-06 ATTTGTAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 52433308 52433324 0.0E+00 TTTGTAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 52433309 52433325 0.0E+00 TTGTAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 52433310 52433326 0.0E+00 TGTAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 52433311 52433327 0.0E+00 GTAAAAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 52433312 52433328 1.0E-06 TAAAAAAAAAAAAAATG 17 V_SRF_06_M02916 TRANSFAC + 52433313 52433329 1.0E-06 AAAAAAAAAAAAAATGG 17 V_SRF_06_M02916 TRANSFAC + 52433314 52433330 5.0E-06 AAAAAAAAAAAAATGGT 17 V_SRF_06_M02916 TRANSFAC + 52433315 52433331 5.0E-06 AAAAAAAAAAAATGGTA 17 V_SATB1_01_M01232 TRANSFAC + 52433306 52433317 1.0E-05 CATTTGTAAAAA 12 V_YY1_01_M00059 TRANSFAC - 52433318 52433334 8.0E-06 AATTACCATTTTTTTTT 17 V_NFE2_01_M00037 TRANSFAC - 52436086 52436096 8.0E-06 TGATGACTCAC 11 V_PR_02_M00957 TRANSFAC - 52436013 52436039 2.0E-06 GGTTCTAGGAAGTCATGTTCTGGTGGG 27 V_BSX_01_M01442 TRANSFAC + 52433326 52433341 4.0E-06 ATGGTAATTGTTTAAT 16 V_BARHL2_01_M01446 TRANSFAC - 52433326 52433341 5.0E-06 ATTAAACAATTACCAT 16 V_SOX12_03_M02796 TRANSFAC + 52433330 52433343 2.0E-06 TAATTGTTTAATAT 14 V_SRY_05_M02917 TRANSFAC - 52433327 52433343 6.0E-06 ATATTAAACAATTACCA 17 V_HOXA10_01_M01464 TRANSFAC + 52433308 52433323 9.0E-06 TTTGTAAAAAAAAAAA 16 V_BARX1_01_M01340 TRANSFAC - 52433324 52433339 5.0E-06 TAAACAATTACCATTT 16 V_BARX1_01_M01340 TRANSFAC + 52433326 52433341 0.0E+00 ATGGTAATTGTTTAAT 16 V_TCF3_05_M02920 TRANSFAC + 52433308 52433322 5.0E-06 TTTGTAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 52433313 52433327 9.0E-06 AAAAAAAAAAAAAAT 15 V_GLIS2_04_M02863 TRANSFAC - 52433334 52433347 1.0E-05 TATGATATTAAACA 14 V_PAX4_04_M00380 TRANSFAC + 52433320 52433349 6.0E-06 AAAAAAATGGTAATTGTTTAATATCATAGC 30 V_HOXB5_01_M01319 TRANSFAC + 52433326 52433341 7.0E-06 ATGGTAATTGTTTAAT 16 V_NANOG_02_M01247 TRANSFAC + 52433308 52433327 5.0E-06 TTTGTAAAAAAAAAAAAAAT 20 V_IPF1_06_M01438 TRANSFAC + 52433326 52433341 8.0E-06 ATGGTAATTGTTTAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.