Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FAM108A1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 81926 abhydrolase domain containing 17A chr19 - 1885018 - 1890518 1885518 Transcription Factor Binding Sites   Download all TFBS in the FAM108A1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR + 1885511 1885521 1.0E-06 CCGGAAGTGAC 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 1885602 1885612 1.0E-05 GCCACGCCCCT 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 1885581 1885591 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 1885602 1885612 7.0E-06 GCCACGCCCCT 11 ELF4_ETS_full_monomeric_12_1 SELEX + 1885508 1885519 8.0E-06 GCCCCGGAAGTG 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 1882701 1882716 5.0E-06 AGTTGCTAAAGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 1882701 1882716 5.0E-06 GGTTGCTTTAGCAACT 16 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 1885600 1885613 6.0E-06 GGCCACGCCCCTCG 14 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 1887552 1887562 3.0E-06 AGCCTGAGGCT 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX - 1887552 1887562 1.0E-06 AGCCTCAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 1887552 1887562 6.0E-06 AGCCTGAGGCT 11 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX - 1887552 1887562 1.0E-06 AGCCTCAGGCT 11 KLF13_C2H2_full_monomeric_18_1 SELEX - 1884364 1884381 4.0E-06 AGTCCACGCCCATTAGTG 18 KLF13_C2H2_full_monomeric_18_1 SELEX - 1885597 1885614 6.0E-06 AGGCCACGCCCCTCGACA 18 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 1882701 1882716 3.0E-06 AGTTGCTAAAGCAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 1882701 1882716 2.0E-06 GGTTGCTTTAGCAACT 16 SP1_MA0079.2 JASPAR - 1882605 1882614 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 1885581 1885590 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 1885578 1885594 8.0E-06 TCAGCCCCGCCCCCAGG 17 SP4_C2H2_full_monomeric_17_1 SELEX - 1885599 1885615 2.0E-06 CAGGCCACGCCCCTCGA 17 SP4_C2H2_full_monomeric_17_1 SELEX - 1885620 1885636 1.0E-06 TTGGCCCCGCCCACAGA 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 1885623 1885633 1.0E-05 GCCCCGCCCAC 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 1882701 1882716 2.0E-06 AGTTGCTAAAGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 1882701 1882716 2.0E-06 GGTTGCTTTAGCAACT 16 TEAD3_TEA_DBD_dimeric_17_1 SELEX + 1887589 1887605 5.0E-06 TCATTCCTCAAATTCAG 17 RFX5_RFX_DBD_dimeric_16_3 SELEX + 1882701 1882716 1.0E-06 AGTTGCTAAAGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 1882701 1882716 1.0E-06 GGTTGCTTTAGCAACT 16 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 1885599 1885613 5.0E-06 GGCCACGCCCCTCGA 15 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 1887552 1887562 2.0E-06 AGCCTGAGGCT 11 TFAP2C_TFAP_full_dimeric_11_1 SELEX - 1887552 1887562 1.0E-06 AGCCTCAGGCT 11 TEAD1_TEA_full_dimeric_17_1 SELEX + 1887589 1887605 2.0E-06 TCATTCCTCAAATTCAG 17 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 1882346 1882358 6.0E-06 AATACAACAAACA 13 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 1887552 1887562 2.0E-06 AGCCTGAGGCT 11 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 1887552 1887562 1.0E-06 AGCCTCAGGCT 11 RREB1_MA0073.1 JASPAR + 1882574 1882593 8.0E-06 ACACCACACACCCCACAGGA 20 V_MTF1_01_M01242 TRANSFAC - 1887341 1887360 2.0E-06 GTCTGCAGCCCTTTCTGCCC 20 V_TEL1_02_M02070 TRANSFAC + 1885510 1885519 5.0E-06 CCCGGAAGTG 10 V_FLI1_Q6_M01208 TRANSFAC + 1885511 1885521 1.0E-06 CCGGAAGTGAC 11 V_FLI1_Q6_M01208 TRANSFAC + 1887322 1887332 6.0E-06 AAGGAAGTGAC 11 V_ZEC_01_M01081 TRANSFAC - 1882711 1882723 4.0E-06 CTATTGTGGTTGC 13 V_AML3_Q6_M01856 TRANSFAC + 1882713 1882720 1.0E-05 AACCACAA 8 V_NERF_01_M01976 TRANSFAC + 1885510 1885519 9.0E-06 CCCGGAAGTG 10 V_SPIB_02_M02041 TRANSFAC + 1882340 1882349 4.0E-06 AGAGGAAATA 10 V_FOXJ2_02_M00423 TRANSFAC + 1882714 1882727 6.0E-06 ACCACAATAGTGTA 14 V_SP1_Q6_01_M00931 TRANSFAC + 1885582 1885591 4.0E-06 GGGGCGGGGC 10 V_SP1_03_M02281 TRANSFAC - 1882605 1882614 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 1885581 1885590 7.0E-06 CCCCGCCCCC 10 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 1887276 1887290 9.0E-06 GAAGGTTACTGGAGA 15 V_ELF2_02_M02054 TRANSFAC + 1885510 1885519 8.0E-06 CCCGGAAGTG 10 V_SPIC_01_M02042 TRANSFAC + 1882340 1882349 7.0E-06 AGAGGAAATA 10 V_ZNF219_01_M01122 TRANSFAC - 1882600 1882611 3.0E-06 CTCCCCCCTCAC 12 V_GC_01_M00255 TRANSFAC + 1885580 1885593 0.0E+00 TGGGGGCGGGGCTG 14 V_ZFP105_03_M02827 TRANSFAC + 1882348 1882362 6.0E-06 TACAACAAACAAAGG 15 V_HNF3G_Q4_M02015 TRANSFAC - 1882351 1882358 7.0E-06 TGTTTGTT 8 V_SOX8_04_M02912 TRANSFAC + 1887598 1887611 8.0E-06 AAATTCAGGACACA 14 V_POLY_C_M00212 TRANSFAC + 1885679 1885696 3.0E-06 CAGTAAAGTTCTCGCCTG 18 V_PAX9_B_M00329 TRANSFAC + 1885593 1885616 8.0E-06 GATATGTCGAGGGGCGTGGCCTGC 24 V_AML2_01_M01759 TRANSFAC + 1882713 1882720 1.0E-05 AACCACAA 8 V_SP1_Q6_M00196 TRANSFAC + 1885580 1885592 1.0E-06 TGGGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC + 1885622 1885634 5.0E-06 TGTGGGCGGGGCC 13 V_GADP_01_M01258 TRANSFAC - 1885508 1885519 2.0E-06 CACTTCCGGGGC 12 V_DAX1_01_M01248 TRANSFAC + 1882756 1882775 8.0E-06 AAACACGAAGGTCTGAGACG 20 V_TEL2_Q6_M00678 TRANSFAC - 1885511 1885520 9.0E-06 TCACTTCCGG 10 V_ZIC3_05_M02941 TRANSFAC + 1882874 1882888 1.0E-06 GGTCACAGCATGAGA 15 V_KLF7_03_M02773 TRANSFAC - 1885579 1885594 4.0E-06 TCAGCCCCGCCCCCAG 16 V_KLF7_03_M02773 TRANSFAC - 1885621 1885636 3.0E-06 TTGGCCCCGCCCACAG 16 V_TEL1_01_M01993 TRANSFAC + 1885510 1885519 5.0E-06 CCCGGAAGTG 10 V_ELF4_01_M01979 TRANSFAC + 1885510 1885519 4.0E-06 CCCGGAAGTG 10 V_SP4_Q5_M01273 TRANSFAC - 1885534 1885544 7.0E-06 CCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 1885581 1885591 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 1885623 1885633 9.0E-06 GCCCCGCCCAC 11 V_ZIC2_05_M02940 TRANSFAC + 1882874 1882888 2.0E-06 GGTCACAGCATGAGA 15 V_FOX_Q2_M00809 TRANSFAC - 1882349 1882361 6.0E-06 CTTTGTTTGTTGT 13 V_ZFP281_01_M01597 TRANSFAC + 1882604 1882614 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 1885580 1885590 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_04_M02831 TRANSFAC - 1882601 1882615 6.0E-06 TCCCCTCCCCCCTCA 15 V_ZFP281_04_M02831 TRANSFAC - 1882602 1882616 0.0E+00 TTCCCCTCCCCCCTC 15 V_SOX4_01_M01308 TRANSFAC + 1882355 1882362 1.0E-05 AACAAAGG 8 V_SOX4_01_M01308 TRANSFAC + 1882370 1882377 1.0E-05 AACAAAGG 8 V_HNF3B_Q6_M02014 TRANSFAC - 1882351 1882359 1.0E-05 TTGTTTGTT 9 V_ELF_02_M02053 TRANSFAC + 1885510 1885519 1.0E-05 CCCGGAAGTG 10 V_SP1_Q2_01_M00933 TRANSFAC - 1885581 1885590 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 1884012 1884025 8.0E-06 GGTTGGGGAAGGGA 14 V_TCFAP2E_03_M02822 TRANSFAC + 1887550 1887564 1.0E-05 TAAGCCTGAGGCTCC 15 V_SP1_Q4_01_M00932 TRANSFAC + 1885580 1885592 2.0E-06 TGGGGGCGGGGCT 13 V_SP1_Q4_01_M00932 TRANSFAC + 1885622 1885634 4.0E-06 TGTGGGCGGGGCC 13 V_DEC_Q1_M00997 TRANSFAC - 1885647 1885659 0.0E+00 CCCCAAGTGAATG 13 V_SOX9_Q4_M01284 TRANSFAC + 1882354 1882364 3.0E-06 AAACAAAGGCT 11 V_SOX9_Q4_M01284 TRANSFAC + 1882369 1882379 1.0E-06 AAACAAAGGCA 11 V_RFX1_02_M00281 TRANSFAC + 1882700 1882717 0.0E+00 AAGTTGCTAAAGCAACCA 18 V_RFX1_02_M00281 TRANSFAC - 1882700 1882717 1.0E-06 TGGTTGCTTTAGCAACTT 18 V_SPI1_02_M02043 TRANSFAC + 1882340 1882349 3.0E-06 AGAGGAAATA 10 V_ZIC1_05_M02939 TRANSFAC + 1882874 1882888 4.0E-06 GGTCACAGCATGAGA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.