Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

SLIRP


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
81892 SRA stem-loop interacting RNA binding protein chr14 +78169413 - 78174913 78174413

Transcription Factor Binding Sites

 
Download all TFBS in the SLIRP promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
MYBL2_MYB_DBD_dimeric_14_1 SELEX - 78174699 78174712 1.0E-06 AACGGTTAACTGCA 14
ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 78173694 78173710 6.0E-06 GAGGTCATTGAAGGATT 17
SPIB_ETS_DBD_monomeric_14_1 SELEX - 78174606 78174619 7.0E-06 AAAAAGCAGAAGCT 14
MYBL1_MYB_DBD_dimeric_12_2 SELEX + 78174700 78174711 8.0E-06 GCAGTTAACCGT 12
MYBL1_MYB_DBD_dimeric_12_2 SELEX - 78174700 78174711 5.0E-06 ACGGTTAACTGC 12
MYBL2_MYB_DBD_monomeric_11_1 SELEX + 78174704 78174714 4.0E-06 TTAACCGTTTA 11
Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 78173910 78173920 4.0E-06 AGAAATAAACA 11
FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 78173907 78173920 6.0E-06 GTAAGAAATAAACA 14
NFATC1_NFAT_full_dimeric_20_1 SELEX + 78174575 78174594 4.0E-06 AGTGGAATTTTTAGGTCCAA 20
YY2_C2H2_full_monomeric_11_1 SELEX - 78174452 78174462 4.0E-06 GCCGCCATCTT 11
FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 78173910 78173920 8.0E-06 AGAAATAAACA 11
SPDEF_ETS_full_putative-multimer_16_1 SELEX + 78173904 78173919 8.0E-06 ACAGTAAGAAATAAAC 16
PPARG_MA0066.1 JASPAR - 78174584 78174603 6.0E-06 GAGGATCACTTGGACCTAAA 20
MYBL1_MYB_DBD_monomeric_11_1 SELEX + 78174704 78174714 3.0E-06 TTAACCGTTTA 11
SPI1_ETS_full_monomeric_14_1 SELEX - 78174606 78174619 3.0E-06 AAAAAGCAGAAGCT 14
ETV6_ETS_full_dimeric_15_1 SELEX + 78174393 78174407 9.0E-06 CCGGATCCGGAAATT 15
FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 78173908 78173920 9.0E-06 TAAGAAATAAACA 13
FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 78173907 78173920 1.0E-05 GTAAGAAATAAACA 14
V_ELF5_03_M02057 TRANSFAC - 78174407 78174416 5.0E-06 CCCGGAAAAA 10
V_FOXP1_01_M00987 TRANSFAC - 78173872 78173891 1.0E-06 ACATTTCTGTTTGGGTTTTT 20
V_FREAC7_01_M00293 TRANSFAC + 78173909 78173924 2.0E-06 AAGAAATAAACACGGA 16
V_APOLYA_B_M00310 TRANSFAC + 78173913 78173927 2.0E-06 AATAAACACGGATTC 15
V_FOXA2_04_M02749 TRANSFAC - 78174690 78174706 8.0E-06 TAACTGCAAACAAAATT 17
V_HMGIY_Q3_M01010 TRANSFAC + 78173807 78173821 5.0E-06 AGTGGTTTTTTTTAA 15
V_HMGIY_Q3_M01010 TRANSFAC + 78174575 78174589 7.0E-06 AGTGGAATTTTTAGG 15
V_MMEF2_Q6_M00405 TRANSFAC - 78173810 78173825 1.0E-06 CAGCTTAAAAAAAACC 16
V_STAT_Q6_M00777 TRANSFAC + 78173785 78173797 7.0E-06 GTCAGTTCTGGGA 13
V_P50P50_Q3_M01223 TRANSFAC - 78174714 78174726 1.0E-05 AAGGGACATCCCT 13
V_GABPA_04_M02858 TRANSFAC + 78174335 78174350 4.0E-06 CCATCTTCCCCATCTC 16
V_STAT5B_01_M00459 TRANSFAC + 78173684 78173698 8.0E-06 GGATTCTCAGAATCC 15
V_STAT5B_01_M00459 TRANSFAC - 78173684 78173698 1.0E-05 GGATTCTGAGAATCC 15
V_FOXJ1_03_M02750 TRANSFAC - 78174689 78174704 2.0E-06 ACTGCAAACAAAATTT 16
V_TCFAP2E_04_M02926 TRANSFAC - 78173811 78173824 4.0E-06 AGCTTAAAAAAAAC 14
V_CETS1P54_02_M00074 TRANSFAC + 78174396 78174408 6.0E-06 GATCCGGAAATTT 13
V_LXRB_RXRA_Q5_M02021 TRANSFAC - 78173697 78173711 3.0E-06 GGAGGTCATTGAAGG 15
V_WT1_Q6_01_M02036 TRANSFAC + 78173947 78173956 4.0E-06 CGCCCCCGCC 10
V_ELF4_04_M02850 TRANSFAC - 78173807 78173823 5.0E-06 GCTTAAAAAAAACCACT 17
V_ETV7_01_M02071 TRANSFAC - 78174407 78174416 2.0E-06 CCCGGAAAAA 10
V_HNF3G_Q4_M02015 TRANSFAC - 78173764 78173771 7.0E-06 TGTTTGTT 8
V_POLY_C_M00212 TRANSFAC - 78174682 78174699 7.0E-06 AAACAAAATTTCTTTCTG 18
V_SPDEF_03_M02811 TRANSFAC + 78174393 78174408 6.0E-06 CCGGATCCGGAAATTT 16
V_AMEF2_Q6_M00403 TRANSFAC - 78173808 78173825 6.0E-06 CAGCTTAAAAAAAACCAC 18
V_AMEF2_Q6_M00403 TRANSFAC + 78173864 78173881 9.0E-06 GGTTTTACAAAAACCCAA 18
V_HNF3ALPHA_Q6_M00724 TRANSFAC - 78173761 78173771 1.0E-05 TGTTTGTTAAG 11
V_SZF11_01_M01109 TRANSFAC - 78174352 78174366 1.0E-05 AGAGGGTATAGGCCG 15
V_SFPI1_04_M02896 TRANSFAC - 78174395 78174408 4.0E-06 AAATTTCCGGATCC 14
V_YY1_Q6_02_M01035 TRANSFAC - 78174452 78174462 7.0E-06 GCCGCCATCTT 11
V_REX1_03_M01744 TRANSFAC - 78174330 78174341 9.0E-06 AAGATGGCAGCG 12
V_REX1_03_M01744 TRANSFAC + 78174452 78174463 0.0E+00 AAGATGGCGGCC 12
V_MEF2_Q6_01_M00941 TRANSFAC + 78173810 78173821 1.0E-06 GGTTTTTTTTAA 12
V_PTF1BETA_Q6_M00657 TRANSFAC - 78174399 78174412 4.0E-06 GAAAAAATTTCCGG 14
V_CIZ_01_M00734 TRANSFAC - 78174404 78174412 5.0E-06 GAAAAAATT 9
V_MTF1_06_M02882 TRANSFAC + 78173905 78173918 9.0E-06 CAGTAAGAAATAAA 14
V_EHF_06_M02745 TRANSFAC + 78174394 78174408 6.0E-06 CGGATCCGGAAATTT 15
V_FOXJ3_06_M02855 TRANSFAC + 78173873 78173889 8.0E-06 AAAACCCAAACAGAAAT 17
V_NKX3A_02_M01383 TRANSFAC + 78174619 78174635 1.0E-05 TGCAGGGTACTTAAGTC 17
V_CBF_01_M01079 TRANSFAC + 78173802 78173817 6.0E-06 TCGGGAGTGGTTTTTT 16
V_PARP_Q3_M01211 TRANSFAC + 78173908 78173917 8.0E-06 TAAGAAATAA 10
V_PBX1_03_M01017 TRANSFAC + 78174498 78174509 9.0E-06 GTATCAATCAGC 12
V_SRF_06_M02916 TRANSFAC - 78173806 78173822 1.0E-06 CTTAAAAAAAACCACTC 17
V_SRF_06_M02916 TRANSFAC - 78173807 78173823 1.0E-06 GCTTAAAAAAAACCACT 17
V_FOXJ2_01_M00422 TRANSFAC + 78173908 78173925 6.0E-06 TAAGAAATAAACACGGAT 18
V_PAX4_02_M00377 TRANSFAC - 78174401 78174411 5.0E-06 AAAAAATTTCC 11
V_LPOLYA_B_M00318 TRANSFAC - 78173992 78173999 7.0E-06 CAATAAAG 8
V_MAFK_04_M02880 TRANSFAC - 78174574 78174588 6.0E-06 CTAAAAATTCCACTA 15
V_ATATA_B_M00311 TRANSFAC + 78174625 78174634 5.0E-06 GTACTTAAGT 10
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL