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HM13 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 81502 histocompatibility (minor) 13 chr20 + 30097240 - 30102740 30102240 Transcription Factor Binding Sites   Download all TFBS in the HM13 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 30101907 30101924 5.0E-06 TCAATAAATATTTAAGGA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 30101907 30101924 4.0E-06 TCCTTAAATATTTATTGA 18 POU4F2_POU_full_monomeric_16_1 SELEX + 30101910 30101925 0.0E+00 ATAAATATTTAAGGAG 16 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 30101929 30101936 5.0E-06 ATAAACAA 8 SOX10_HMG_full_dimeric_16_1 SELEX - 30105202 30105217 9.0E-06 ACCAATGTTTAATGTG 16 POU2F1_POU_DBD_dimeric_14_1 SELEX + 30101909 30101922 1.0E-06 AATAAATATTTAAG 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 30101909 30101922 2.0E-06 CTTAAATATTTATT 14 Tp53_p53l_DBD_dimeric_18_1 SELEX + 30105346 30105363 1.0E-06 ACATGTGACTAGTCAAGT 18 POU3F3_POU_DBD_monomeric_12_1 SELEX + 30101910 30101921 6.0E-06 ATAAATATTTAA 12 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 30101929 30101945 2.0E-06 ATAAACAATTGGATACC 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 30101926 30101937 2.0E-06 TGAATAAACAAT 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 30104706 30104720 3.0E-06 TCATTATCCTCATTG 15 FOXL1_forkhead_full_dimeric_13_1 SELEX + 30101905 30101917 4.0E-06 ATTCAATAAATAT 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 30101924 30101936 5.0E-06 AGTGAATAAACAA 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 30101909 30101922 5.0E-06 AATAAATATTTAAG 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 30101909 30101922 6.0E-06 CTTAAATATTTATT 14 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 30102254 30102265 3.0E-06 TCCCCTAAGGCA 12 POU4F3_POU_DBD_monomeric_16_1 SELEX + 30101910 30101925 1.0E-06 ATAAATATTTAAGGAG 16 IRF1_MA0050.1 JASPAR - 30104702 30104713 7.0E-06 GATAATGAAACT 12 Tcfcp2l1_MA0145.1 JASPAR - 30102032 30102045 5.0E-06 CCAGTCCCAGCCGG 14 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 30105300 30105316 6.0E-06 AGGCCAAGCCCTGCCCT 17 RFX2_RFX_DBD_dimeric_15_1 SELEX + 30102110 30102124 3.0E-06 AGTTGCTTAGCAACC 15 RFX2_RFX_DBD_dimeric_15_1 SELEX - 30102110 30102124 0.0E+00 GGTTGCTAAGCAACT 15 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 30101909 30101922 6.0E-06 AATAAATATTTAAG 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 30101909 30101922 9.0E-06 CTTAAATATTTATT 14 POU6F2_POU_DBD_dimeric_16_1 SELEX + 30101918 30101933 9.0E-06 TTAAGGAGTGAATAAA 16 Foxq1_MA0040.1 JASPAR - 30101928 30101938 0.0E+00 AATTGTTTATT 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 30101925 30101935 7.0E-06 GTGAATAAACA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 30101960 30101970 1.0E-05 ATGAATAAACA 11 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 30101909 30101922 6.0E-06 AATAAATATTTAAG 14 HIC2_C2H2_DBD_monomeric_9_1 SELEX + 30102066 30102074 1.0E-05 ATGCCCACC 9 POU2F3_POU_DBD_dimeric_12_1 SELEX + 30101910 30101921 0.0E+00 ATAAATATTTAA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 30101910 30101921 2.0E-06 TTAAATATTTAT 12 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 30103716 30103725 6.0E-06 AGCAGCTGCC 10 SRY_MA0084.1 JASPAR + 30101929 30101937 5.0E-06 ATAAACAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 30101909 30101922 5.0E-06 AATAAATATTTAAG 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 30101909 30101922 6.0E-06 CTTAAATATTTATT 14 RFX3_RFX_DBD_dimeric_15_1 SELEX + 30102110 30102124 1.0E-05 AGTTGCTTAGCAACC 15 RFX3_RFX_DBD_dimeric_15_1 SELEX - 30102110 30102124 0.0E+00 GGTTGCTAAGCAACT 15 SPDEF_ETS_full_putative-multimer_15_1 SELEX - 30105283 30105297 9.0E-06 TTTGTCCCGGAACTC 15 NFATC1_NFAT_full_dimeric_20_1 SELEX + 30102260 30102279 1.0E-05 AGGGGAACGTGGCTTTCCCT 20 CTCF_C2H2_full_monomeric_17_1 SELEX - 30102143 30102159 2.0E-06 CTCGCCCTCTAGCGGTG 17 SOX7_HMG_full_dimeric_16_1 SELEX - 30105202 30105217 1.0E-05 ACCAATGTTTAATGTG 16 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 30102193 30102207 9.0E-06 CACACACGCTTGCAC 15 RFX4_RFX_DBD_dimeric_15_1 SELEX - 30102110 30102124 0.0E+00 GGTTGCTAAGCAACT 15 POU1F1_POU_DBD_monomeric_17_1 SELEX + 30101907 30101923 5.0E-06 TCAATAAATATTTAAGG 17 Foxd3_MA0041.1 JASPAR - 30101927 30101938 2.0E-06 AATTGTTTATTC 12 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 30101909 30101922 5.0E-06 AATAAATATTTAAG 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 30101909 30101922 9.0E-06 CTTAAATATTTATT 14 ERF_ETS_DBD_monomeric_10_1 SELEX - 30102244 30102253 9.0E-06 ACAGGAAGTG 10 Nkx3-2_MA0122.1 JASPAR + 30103678 30103686 8.0E-06 CTAAGTGGA 9 POU3F1_POU_DBD_monomeric_12_2 SELEX + 30101910 30101921 2.0E-06 ATAAATATTTAA 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 30104705 30104721 8.0E-06 TTCATTATCCTCATTGT 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 30104705 30104721 2.0E-06 ACAATGAGGATAATGAA 17 TFAP2C_TFAP_full_dimeric_12_1 SELEX - 30102254 30102265 2.0E-06 TCCCCTAAGGCA 12 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 30102437 30102448 7.0E-06 CGCCCGAGGGCA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 30101910 30101921 1.0E-06 ATAAATATTTAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 30101910 30101921 2.0E-06 TTAAATATTTAT 12 Myf_MA0055.1 JASPAR - 30105396 30105407 3.0E-06 AGACAACTGCTG 12 ELF5_ETS_full_monomeric_11_1 SELEX - 30102244 30102254 6.0E-06 AACAGGAAGTG 11 TEAD1_TEA_full_dimeric_17_1 SELEX + 30101903 30101919 5.0E-06 ACATTCAATAAATATTT 17 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 30102254 30102265 2.0E-06 TCCCCTAAGGCA 12 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 30102437 30102448 8.0E-06 TGCCCTCGGGCG 12 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 30101929 30101936 5.0E-06 ATAAACAA 8 POU3F3_POU_DBD_dimeric_12_1 SELEX + 30101910 30101921 0.0E+00 ATAAATATTTAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 30101910 30101921 1.0E-06 TTAAATATTTAT 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 30101923 30101935 8.0E-06 GAGTGAATAAACA 13 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 30102254 30102265 6.0E-06 TCCCCTAAGGCA 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 30102437 30102448 9.0E-06 TGCCCTCGGGCG 12 POU4F1_POU_DBD_monomeric_14_1 SELEX + 30101910 30101923 3.0E-06 ATAAATATTTAAGG 14 IRF2_MA0051.1 JASPAR - 30104697 30104714 1.0E-06 GGATAATGAAACTGGCTC 18 V_FOXP1_01_M00987 TRANSFAC - 30101948 30101967 3.0E-06 TTATTCATACATGCATTTAT 20 V_DBX1_01_M01483 TRANSFAC + 30101904 30101920 2.0E-06 CATTCAATAAATATTTA 17 V_DBX1_01_M01483 TRANSFAC - 30101904 30101920 1.0E-06 TAAATATTTATTGAATG 17 V_FREAC7_01_M00293 TRANSFAC + 30101905 30101920 3.0E-06 ATTCAATAAATATTTA 16 V_FREAC7_01_M00293 TRANSFAC + 30101959 30101974 1.0E-06 TATGAATAAACACATT 16 V_ZFP187_03_M02830 TRANSFAC + 30101954 30101967 7.0E-06 GCATGTATGAATAA 14 V_CDX2_Q5_01_M01659 TRANSFAC + 30101907 30101917 2.0E-06 TCAATAAATAT 11 V_FLI1_Q6_M01208 TRANSFAC - 30102242 30102252 0.0E+00 CAGGAAGTGAC 11 V_XFD1_01_M00267 TRANSFAC + 30101926 30101939 7.0E-06 TGAATAAACAATTG 14 V_XFD1_01_M00267 TRANSFAC + 30101961 30101974 8.0E-06 TGAATAAACACATT 14 V_SMAD3_Q6_01_M01888 TRANSFAC + 30102611 30102623 7.0E-06 GGACAGACACCTC 13 V_SOX30_03_M02804 TRANSFAC + 30101928 30101943 1.0E-06 AATAAACAATTGGATA 16 V_FOXD3_01_M00130 TRANSFAC - 30101927 30101938 1.0E-06 AATTGTTTATTC 12 V_BCL6_01_M01183 TRANSFAC + 30101904 30101919 6.0E-06 CATTCAATAAATATTT 16 V_SP100_03_M02809 TRANSFAC + 30101979 30101992 1.0E-06 GTTATTCGGAATAT 14 V_SRY_02_M00160 TRANSFAC + 30101929 30101940 5.0E-06 ATAAACAATTGG 12 V_POU1F1_Q6_M00744 TRANSFAC + 30101960 30101969 6.0E-06 ATGAATAAAC 10 V_FOXO3A_Q1_M01137 TRANSFAC + 30101928 30101939 9.0E-06 AATAAACAATTG 12 V_RFX4_03_M02789 TRANSFAC + 30102112 30102126 7.0E-06 TTGCTTAGCAACCCG 15 V_HNF3_Q6_01_M01012 TRANSFAC - 30101923 30101940 6.0E-06 CCAATTGTTTATTCACTC 18 V_FOXJ1_03_M02750 TRANSFAC + 30101926 30101941 5.0E-06 TGAATAAACAATTGGA 16 V_FOXJ1_03_M02750 TRANSFAC + 30101961 30101976 3.0E-06 TGAATAAACACATTCT 16 V_NERF_Q2_M00531 TRANSFAC - 30102238 30102255 2.0E-06 CAACAGGAAGTGACGTGC 18 V_HOXD13_01_M01404 TRANSFAC + 30101904 30101919 5.0E-06 CATTCAATAAATATTT 16 V_FOXP3_01_M01599 TRANSFAC + 30101929 30101936 5.0E-06 ATAAACAA 8 V_LDSPOLYA_B_M00317 TRANSFAC - 30101959 30101974 5.0E-06 AATGTGTTTATTCATA 16 V_HBP1_Q2_M01661 TRANSFAC + 30101906 30101914 4.0E-06 TTCAATAAA 9 V_TCFAP2C_04_M02925 TRANSFAC + 30102436 30102449 2.0E-06 ACGCCCGAGGGCAT 14 V_ETS_Q4_M00771 TRANSFAC + 30102241 30102252 6.0E-06 CGTCACTTCCTG 12 V_SOX7_03_M02807 TRANSFAC + 30101925 30101946 4.0E-06 GTGAATAAACAATTGGATACCC 22 V_MYF_01_M01302 TRANSFAC - 30105396 30105407 3.0E-06 AGACAACTGCTG 12 V_DOBOX4_01_M01359 TRANSFAC + 30101934 30101950 1.0E-06 CAATTGGATACCCAATA 17 V_RFX1_01_M00280 TRANSFAC + 30102109 30102125 2.0E-06 AAGTTGCTTAGCAACCC 17 V_RFX1_01_M00280 TRANSFAC - 30102109 30102125 2.0E-06 GGGTTGCTAAGCAACTT 17 V_ZBP89_Q4_M01816 TRANSFAC + 30103649 30103658 2.0E-06 TCCTCCCCCA 10 V_HNF3_Q6_M00791 TRANSFAC + 30101925 30101937 8.0E-06 GTGAATAAACAAT 13 V_HNF3_Q6_M00791 TRANSFAC + 30101960 30101972 2.0E-06 ATGAATAAACACA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 30101960 30101970 5.0E-06 TGTTTATTCAT 11 V_HNF1_Q6_01_M01011 TRANSFAC + 30101906 30101926 9.0E-06 TTCAATAAATATTTAAGGAGT 21 V_SOX18_03_M02801 TRANSFAC - 30101926 30101941 7.0E-06 TCCAATTGTTTATTCA 16 V_RFXDC2_03_M02790 TRANSFAC + 30102112 30102126 3.0E-06 TTGCTTAGCAACCCG 15 V_ASCL2_03_M02737 TRANSFAC + 30103713 30103729 3.0E-06 CAAAGCAGCTGCCACTT 17 V_ISRE_01_M00258 TRANSFAC + 30104701 30104715 8.0E-06 CAGTTTCATTATCCT 15 V_ISRE_01_M00258 TRANSFAC - 30104723 30104737 0.0E+00 CAGTTTCTTTTCCTG 15 V_MUSCLE_INI_B_M00321 TRANSFAC + 30102674 30102694 8.0E-06 TCGGGCCCACATTCCGGGGCT 21 V_TEL2_Q6_M00678 TRANSFAC + 30102243 30102252 4.0E-06 TCACTTCCTG 10 V_XFD2_01_M00268 TRANSFAC + 30101907 30101920 3.0E-06 TCAATAAATATTTA 14 V_XFD2_01_M00268 TRANSFAC + 30101926 30101939 3.0E-06 TGAATAAACAATTG 14 V_HFH1_01_M00129 TRANSFAC - 30101927 30101938 1.0E-06 AATTGTTTATTC 12 V_NCX_02_M01420 TRANSFAC + 30101904 30101920 5.0E-06 CATTCAATAAATATTTA 17 V_CETS1P54_01_M00032 TRANSFAC - 30102244 30102253 9.0E-06 ACAGGAAGTG 10 V_TBP_06_M02814 TRANSFAC + 30101905 30101920 7.0E-06 ATTCAATAAATATTTA 16 V_CTCF_01_M01200 TRANSFAC + 30105381 30105400 1.0E-05 GCCTCCTGGAGGGGGCAGCA 20 V_SOX9_B1_M00410 TRANSFAC + 30101928 30101941 7.0E-06 AATAAACAATTGGA 14 V_ELF1_Q6_M00746 TRANSFAC - 30102245 30102256 7.0E-06 GCAACAGGAAGT 12 V_HBP1_04_M02866 TRANSFAC + 30104710 30104726 2.0E-06 TATCCTCATTGTACAGG 17 V_HFH8_01_M00294 TRANSFAC - 30101926 30101938 0.0E+00 AATTGTTTATTCA 13 V_HFH8_01_M00294 TRANSFAC - 30101961 30101973 2.0E-06 ATGTGTTTATTCA 13 V_FXR_IR1_Q6_M00767 TRANSFAC - 30102610 30102622 7.0E-06 AGGTGTCTGTCCC 13 V_SOX15_03_M02799 TRANSFAC + 30101927 30101943 5.0E-06 GAATAAACAATTGGATA 17 V_LBP9_01_M01592 TRANSFAC - 30102029 30102045 2.0E-06 CCAGTCCCAGCCGGTCT 17 V_GABPBETA_Q3_M01876 TRANSFAC - 30102243 30102253 1.0E-06 ACAGGAAGTGA 11 V_IPF1_05_M01255 TRANSFAC + 30105201 30105212 9.0E-06 GCACATTAAACA 12 V_ZFP206_01_M01742 TRANSFAC - 30102209 30102219 9.0E-06 CGCGCACGCGC 11 V_TCFAP2B_03_M02820 TRANSFAC + 30102253 30102266 0.0E+00 TTGCCTTAGGGGAA 14 V_TCFAP2B_03_M02820 TRANSFAC - 30102253 30102266 0.0E+00 TTCCCCTAAGGCAA 14 V_TCFAP2B_03_M02820 TRANSFAC + 30102436 30102449 1.0E-06 ACGCCCGAGGGCAT 14 V_FPM315_01_M01587 TRANSFAC - 30103646 30103657 2.0E-06 GGGGGAGGAGCA 12 V_ETS1_B_M00339 TRANSFAC - 30102239 30102253 4.0E-06 ACAGGAAGTGACGTG 15 V_ZFP281_01_M01597 TRANSFAC - 30103648 30103658 9.0E-06 TGGGGGAGGAG 11 V_BBX_03_M02739 TRANSFAC + 30101903 30101917 7.0E-06 ACATTCAATAAATAT 15 V_SOX21_04_M02907 TRANSFAC - 30101926 30101942 6.0E-06 ATCCAATTGTTTATTCA 17 V_IRX2_01_M01405 TRANSFAC + 30101949 30101965 6.0E-06 TAAATGCATGTATGAAT 17 V_HFH3_01_M00289 TRANSFAC - 30101907 30101919 9.0E-06 AAATATTTATTGA 13 V_FOXJ2_01_M00422 TRANSFAC + 30101904 30101921 0.0E+00 CATTCAATAAATATTTAA 18 V_HOXD8_01_M01432 TRANSFAC - 30101904 30101920 3.0E-06 TAAATATTTATTGAATG 17 V_FOXO1_01_M00473 TRANSFAC + 30101928 30101937 0.0E+00 AATAAACAAT 10 V_FOXO1_01_M00473 TRANSFAC + 30101963 30101972 7.0E-06 AATAAACACA 10 V_HNF3B_Q6_M02014 TRANSFAC - 30101928 30101936 6.0E-06 TTGTTTATT 9 V_PIT1_Q6_M00802 TRANSFAC - 30101909 30101926 3.0E-06 ACTCCTTAAATATTTATT 18 V_PIT1_Q6_M00802 TRANSFAC - 30101949 30101966 5.0E-06 TATTCATACATGCATTTA 18 V_PIT1_Q6_M00802 TRANSFAC + 30101951 30101968 4.0E-06 AATGCATGTATGAATAAA 18 V_SRY_05_M02917 TRANSFAC + 30101926 30101942 3.0E-06 TGAATAAACAATTGGAT 17 V_FOXO4_01_M00472 TRANSFAC + 30101964 30101974 8.0E-06 ATAAACACATT 11 V_AP2ALPHA_02_M01045 TRANSFAC + 30102435 30102449 1.0E-05 CACGCCCGAGGGCAT 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 30103647 30103660 1.0E-06 GGTGGGGGAGGAGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 30105448 30105461 4.0E-06 GGTGGGGCAGGGGA 14 V_HOXD10_01_M01375 TRANSFAC + 30101904 30101920 6.0E-06 CATTCAATAAATATTTA 17 V_ELK1_03_M01163 TRANSFAC - 30102244 30102254 1.0E-05 AACAGGAAGTG 11 V_IRXB3_01_M01377 TRANSFAC + 30101949 30101965 3.0E-06 TAAATGCATGTATGAAT 17 V_GLIS2_04_M02863 TRANSFAC + 30101957 30101970 4.0E-06 TGTATGAATAAACA 14 V_MIF1_01_M00279 TRANSFAC - 30102108 30102125 0.0E+00 GGGTTGCTAAGCAACTTG 18 V_MIF1_01_M00279 TRANSFAC + 30102109 30102126 0.0E+00 AAGTTGCTTAGCAACCCG 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.