Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

NPRL3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 8131 nitrogen permease regulator-like 3 (S. cerevisiae) chr16 - 188197 - 193697 188697 Transcription Factor Binding Sites   Download all TFBS in the NPRL3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 193332 193347 0.0E+00 ATGAATTTTAAATTAT 16 CTCF_MA0139.1 JASPAR - 193202 193220 5.0E-06 CCTCCTGCAGATGGCGGTG 19 IRF7_IRF_DBD_dimeric_14_1 SELEX + 193102 193115 9.0E-06 TGGAAACTGAAACC 14 IRF8_IRF_full_dimeric_14_1 SELEX + 193102 193115 1.0E-06 TGGAAACTGAAACC 14 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX - 188897 188908 3.0E-06 AAAACGAAGAAA 12 POU4F3_POU_DBD_monomeric_16_1 SELEX - 193332 193347 1.0E-06 ATGAATTTTAAATTAT 16 IRF1_MA0050.1 JASPAR + 193104 193115 1.0E-06 GAAACTGAAACC 12 SOX9_HMG_full_dimeric_16_3 SELEX - 193332 193347 5.0E-06 ATGAATTTTAAATTAT 16 POU1F1_POU_DBD_monomeric_17_1 SELEX - 193334 193350 2.0E-06 AGCATGAATTTTAAATT 17 IRF9_IRF_full_trimeric_15_1 SELEX + 193101 193115 1.0E-06 TTGGAAACTGAAACC 15 IRF4_IRF_full_dimeric_15_1 SELEX + 193102 193116 3.0E-06 TGGAAACTGAAACCC 15 IRF5_IRF_full_dimeric_14_1 SELEX + 193102 193115 4.0E-06 TGGAAACTGAAACC 14 IRF3_IRF_full_trimeric_21_1 SELEX + 193096 193116 8.0E-06 GATTTTTGGAAACTGAAACCC 21 POU4F1_POU_DBD_monomeric_14_1 SELEX - 193334 193347 1.0E-06 ATGAATTTTAAATT 14 Zfx_MA0146.1 JASPAR + 193130 193143 4.0E-06 CCAGCCTGGGCCTG 14 V_OSR1_03_M02784 TRANSFAC + 193313 193328 8.0E-06 ACACACAGTAGTAATA 16 V_AP2ALPHA_Q6_M01857 TRANSFAC - 188283 188293 6.0E-06 CGCCCCCGGCC 11 V_DBX1_01_M01483 TRANSFAC - 193326 193342 6.0E-06 TTTTAAATTATTTCTAT 17 V_DBX1_01_M01483 TRANSFAC + 193329 193345 3.0E-06 GAAATAATTTAAAATTC 17 V_DBX1_01_M01483 TRANSFAC + 193330 193346 3.0E-06 AAATAATTTAAAATTCA 17 V_MAX_Q6_M01830 TRANSFAC + 188637 188648 1.0E-05 CAACCCACGTGC 12 V_IRF2_Q6_M01882 TRANSFAC + 193102 193117 4.0E-06 TGGAAACTGAAACCCC 16 V_P53_DECAMER_Q2_M00761 TRANSFAC - 193249 193258 7.0E-06 AGGCAAGTCC 10 V_PITX2_Q6_M02114 TRANSFAC + 188946 188955 1.0E-06 TGTAATCCCA 10 V_LHX3_01_M01471 TRANSFAC + 193328 193344 1.0E-05 AGAAATAATTTAAAATT 17 V_TST1_01_M00133 TRANSFAC + 193331 193345 4.0E-06 AATAATTTAAAATTC 15 V_LMX1_01_M01409 TRANSFAC + 193328 193344 4.0E-06 AGAAATAATTTAAAATT 17 V_CART1_01_M00416 TRANSFAC - 193321 193338 1.0E-06 AAATTATTTCTATTACTA 18 V_IRF2_01_M00063 TRANSFAC + 193103 193115 5.0E-06 GGAAACTGAAACC 13 V_KROX_Q6_M00982 TRANSFAC - 188569 188582 8.0E-06 TCCGCCTCCACCCC 14 V_AMEF2_Q6_M00403 TRANSFAC + 188903 188920 7.0E-06 CGTTTTACAAATAACACT 18 V_STAT5A_02_M00460 TRANSFAC - 193083 193106 8.0E-06 TTCCAAAAATCTACTTACCGTCAA 24 V_ISRE_01_M00258 TRANSFAC - 193102 193116 2.0E-06 GGGTTTCAGTTTCCA 15 V_AHR_01_M00139 TRANSFAC + 188653 188670 1.0E-05 CTCCGGGCTCGCGAGACT 18 V_NCX_02_M01420 TRANSFAC + 193330 193346 8.0E-06 AAATAATTTAAAATTCA 17 V_SP3_Q3_M00665 TRANSFAC + 188916 188929 1.0E-06 ACACTTGGGCGGGG 14 V_CTCF_01_M01200 TRANSFAC - 193202 193221 5.0E-06 CCCTCCTGCAGATGGCGGTG 20 V_LIM1_01_M01418 TRANSFAC + 193328 193344 6.0E-06 AGAAATAATTTAAAATT 17 V_LBP9_01_M01592 TRANSFAC + 193697 193713 7.0E-06 CCAGCCCCAGCCGGACT 1 V_GABPBETA_Q3_M01876 TRANSFAC + 193680 193690 5.0E-06 ACAGGAAGGGA 11 V_TCF7_04_M02921 TRANSFAC + 188902 188916 2.0E-06 TCGTTTTACAAATAA 15 V_SMAD3_03_M02794 TRANSFAC - 188792 188808 1.0E-05 CGGCTCCAGACAGCACC 17 V_ZFP206_01_M01742 TRANSFAC - 188719 188729 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 188725 188735 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 188731 188741 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 188752 188762 1.0E-06 TGCGCAGGCGC 11 V_P53_05_M01655 TRANSFAC + 193249 193268 8.0E-06 GGACTTGCCTGGACACCTCC 20 V_P53_05_M01655 TRANSFAC - 193249 193268 1.0E-05 GGAGGTGTCCAGGCAAGTCC 20 V_PITX2_Q2_M00482 TRANSFAC + 188946 188956 1.0E-06 TGTAATCCCAG 11 V_P53_01_M00034 TRANSFAC - 193249 193268 1.0E-05 GGAGGTGTCCAGGCAAGTCC 20 V_T3RBETA_Q6_01_M02119 TRANSFAC + 188585 188601 8.0E-06 GGGCCTGAGGAGGACAG 17 V_SMAD_Q6_01_M00974 TRANSFAC + 193539 193549 7.0E-06 TGGCCAGACAC 11 V_IRF1_Q6_01_M01881 TRANSFAC - 193103 193116 4.0E-06 GGGTTTCAGTTTCC 14 V_SOX8_03_M02808 TRANSFAC - 193326 193342 8.0E-06 TTTTAAATTATTTCTAT 17 V_SATB1_01_M01232 TRANSFAC + 188905 188916 9.0E-06 TTTTACAAATAA 12 V_IRF1_01_M00062 TRANSFAC + 193103 193115 1.0E-05 GGAAACTGAAACC 13 V_MEF2_01_M00006 TRANSFAC + 188905 188920 1.0E-06 TTTTACAAATAACACT 16 V_HMEF2_Q6_M00406 TRANSFAC + 188905 188920 7.0E-06 TTTTACAAATAACACT 16 V_DMRT5_01_M01150 TRANSFAC - 188626 188640 1.0E-05 GTTGGTAACTGTGGC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.