Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

JHDM1D Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 80853 jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) chr7 - 139876241 - 139881741 139876741 Transcription Factor Binding Sites   Download all TFBS in the JHDM1D promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 139877597 139877609 1.0E-06 ATAAATAACAAAA 13 HINFP1_C2H2_full_dimeric_19_1 SELEX - 139875577 139875595 1.0E-06 GCGGACGCTGCGGGGCCGG 19 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 139875029 139875046 4.0E-06 AAAATTAAGTAAAACTTA 18 MSX2_homeodomain_DBD_dimeric_18_1 SELEX - 139875034 139875051 9.0E-06 GTAGTTAAGTTTTACTTA 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 139875030 139875046 2.0E-06 AAATTAAGTAAAACTTA 17 SRF_MADS_DBD_dimeric_12_1 SELEX + 139875343 139875354 6.0E-06 CCCAAATAAGGA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 139875380 139875392 3.0E-06 TTTAAACAAAGAA 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 139875187 139875195 9.0E-06 TATTTAAAT 9 HINFP1_C2H2_full_dimeric_20_1 SELEX + 139875576 139875595 6.0E-06 GCCGGCCCCGCAGCGTCCGC 20 HINFP1_C2H2_full_dimeric_20_1 SELEX - 139875576 139875595 5.0E-06 GCGGACGCTGCGGGGCCGGC 20 HINFP1_C2H2_full_monomeric_12_1 SELEX + 139875555 139875566 1.0E-05 CAGCGTCCGCCG 12 EWSR1-FLI1_MA0149.1 JASPAR + 139876075 139876092 1.0E-06 GGAAGGAAGGCAGGCGCG 18 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 139877594 139877605 1.0E-05 CTTATAAATAAC 12 EGR1_C2H2_full_monomeric_14_1 SELEX - 139877040 139877053 7.0E-06 TCCGCCCCCGCAGC 14 Pax4_MA0068.1 JASPAR + 139877599 139877628 1.0E-05 AAATAACAAAACTTAGCTATGAACCCTTCC 30 SRF_MA0083.1 JASPAR + 139875342 139875353 7.0E-06 ACCCAAATAAGG 12 SRF_MA0083.1 JASPAR - 139875344 139875355 7.0E-06 GTCCTTATTTGG 12 TEAD1_TEA_full_monomeric_10_1 SELEX - 139877393 139877402 7.0E-06 CACATTCCTC 10 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 139877039 139877054 9.0E-06 CTCCGCCCCCGCAGCC 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 139876533 139876543 2.0E-06 GTAAATAAACC 11 MEF2A_MA0052.1 JASPAR - 139877595 139877604 4.0E-06 TTATTTATAA 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 139877436 139877452 6.0E-06 TGCTCGCTGGGAATTCG 17 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 139877039 139877053 8.0E-06 TCCGCCCCCGCAGCC 15 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 139876533 139876543 4.0E-06 GTAAATAAACC 11 PBX1_MA0070.1 JASPAR + 139875202 139875213 7.0E-06 CTGTCAATCAAA 12 PRDM4_C2H2_full_monomeric_13_1 SELEX + 139875870 139875882 3.0E-06 TTTCAAGTCCCCG 13 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 139875029 139875046 9.0E-06 AAAATTAAGTAAAACTTA 18 Pou5f1_MA0142.1 JASPAR - 139877595 139877609 8.0E-06 TTTTGTTATTTATAA 15 SRF_MADS_full_dimeric_16_1 SELEX + 139875341 139875356 9.0E-06 CACCCAAATAAGGACT 16 Myf_MA0055.1 JASPAR - 139876692 139876703 4.0E-06 CAGCAGCTGGAG 12 GLIS3_C2H2_DBD_monomeric_14_1 SELEX - 139875715 139875728 8.0E-06 GACCCCCTGCGTTG 14 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 139877393 139877402 9.0E-06 CACATTCCTC 10 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 139875029 139875046 1.0E-05 AAAATTAAGTAAAACTTA 18 Sox2_MA0143.1 JASPAR - 139877596 139877610 3.0E-06 GTTTTGTTATTTATA 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 139875381 139875393 4.0E-06 ATTTAAACAAAGA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 139876533 139876545 2.0E-06 AGGTAAATAAACC 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 139877597 139877609 3.0E-06 ATAAATAACAAAA 13 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 139876255 139876265 1.0E-05 CGCCCCAGGCT 11 GLIS2_C2H2_DBD_monomeric_14_1 SELEX - 139875715 139875728 3.0E-06 GACCCCCTGCGTTG 14 TEAD1_MA0090.1 JASPAR - 139877391 139877402 2.0E-06 CACATTCCTCCC 12 Zfx_MA0146.1 JASPAR - 139876860 139876873 6.0E-06 GCCGCCGCGGCCTC 14 V_MEQ_01_M02049 TRANSFAC + 139876746 139876754 7.0E-06 AACACACAC 9 V_SRF_Q6_M00186 TRANSFAC + 139875342 139875355 1.0E-06 ACCCAAATAAGGAC 14 V_CEBPG_Q6_M00622 TRANSFAC + 139875459 139875471 4.0E-06 TTGATTACAAAAC 13 V_MSX3_01_M01341 TRANSFAC + 139875001 139875016 4.0E-06 GAAAACTGATTAAGTA 16 V_DBX1_01_M01483 TRANSFAC + 139875026 139875042 9.0E-06 TTGAAAATTAAGTAAAA 17 V_DBX1_01_M01483 TRANSFAC + 139875030 139875046 2.0E-06 AAATTAAGTAAAACTTA 17 V_DBX1_01_M01483 TRANSFAC - 139875034 139875050 9.0E-06 TAGTTAAGTTTTACTTA 17 V_TCF3_01_M01594 TRANSFAC - 139877598 139877610 1.0E-06 GTTTTGTTATTTA 13 V_CDX2_Q5_01_M01659 TRANSFAC + 139877594 139877604 7.0E-06 CTTATAAATAA 11 V_TCFE2A_04_M02927 TRANSFAC - 139875123 139875139 0.0E+00 CAGGCCAGATGTCTTAG 17 V_ZFP410_04_M02936 TRANSFAC - 139875159 139875175 3.0E-06 CCCCCCCTCCCCAATTT 17 V_ZFX_01_M01593 TRANSFAC - 139876644 139876659 1.0E-06 GGCCGGGCCTCGGCGC 16 V_ZFX_01_M01593 TRANSFAC + 139876857 139876872 1.0E-06 CGCGAGGCCGCGGCGG 16 V_EVI1_04_M00081 TRANSFAC - 139877602 139877616 1.0E-05 AGCTAAGTTTTGTTA 15 V_DEAF1_01_M01001 TRANSFAC + 139876911 139876935 1.0E-06 CCAGACTCGGCTGCTTCCGGCGCTC 25 V_MMEF2_Q6_M00405 TRANSFAC + 139876736 139876751 1.0E-06 ATCTTTAAAAAACACA 16 V_MMEF2_Q6_M00405 TRANSFAC + 139877591 139877606 5.0E-06 GTGCTTATAAATAACA 16 V_GATA3_03_M00351 TRANSFAC + 139874914 139874923 5.0E-06 AAAGATTATA 10 V_POU5F1_02_M02245 TRANSFAC - 139877595 139877609 8.0E-06 TTTTGTTATTTATAA 15 V_HOXA13_02_M01297 TRANSFAC + 139875012 139875020 8.0E-06 AAGTAAAAC 9 V_HOXA13_02_M01297 TRANSFAC + 139875035 139875043 8.0E-06 AAGTAAAAC 9 V_HOXA13_02_M01297 TRANSFAC - 139876533 139876541 3.0E-06 AAATAAACC 9 V_SATB1_Q3_M01723 TRANSFAC + 139877597 139877612 9.0E-06 ATAAATAACAAAACTT 16 V_AR_Q6_01_M01996 TRANSFAC - 139875072 139875086 1.0E-06 AATCACAATGTTCTT 15 V_CBF_02_M01080 TRANSFAC - 139875317 139875332 8.0E-06 AAGCCTGCGGTCACCT 16 V_OCT1_Q5_01_M00930 TRANSFAC + 139875082 139875092 4.0E-06 TGATTTACATG 11 V_MEF2_02_M00231 TRANSFAC + 139877588 139877609 8.0E-06 GGCGTGCTTATAAATAACAAAA 22 V_NFMUE1_Q6_M00651 TRANSFAC + 139876731 139876739 6.0E-06 CGGCCATCT 9 V_ISL2_01_M01328 TRANSFAC - 139875030 139875045 8.0E-06 AAGTTTTACTTAATTT 16 V_CEBP_01_M00159 TRANSFAC + 139875684 139875696 9.0E-06 TCTTTGTAAAGTT 13 V_AP4_Q6_M00176 TRANSFAC - 139877350 139877359 5.0E-06 CTCAGCTGGA 10 V_FOXO3A_Q1_M01137 TRANSFAC + 139877596 139877607 2.0E-06 TATAAATAACAA 12 V_YY1_Q6_M00793 TRANSFAC + 139876733 139876741 7.0E-06 GCCATCTTT 9 V_PU1_Q4_M01172 TRANSFAC - 139877232 139877250 6.0E-06 CTTCTCCGCTTCCCCTCTT 19 V_GM497_04_M02864 TRANSFAC + 139876745 139876760 8.0E-06 AAACACACACACGCTC 16 V_LDSPOLYA_B_M00317 TRANSFAC - 139875461 139875476 7.0E-06 CGTGTGTTTTGTAATC 16 V_LDSPOLYA_B_M00317 TRANSFAC - 139876742 139876757 8.0E-06 CGTGTGTGTGTTTTTT 16 V_PAX7_01_M01339 TRANSFAC + 139875002 139875018 9.0E-06 AAAACTGATTAAGTAAA 17 V_AR_03_M00956 TRANSFAC - 139875067 139875093 9.0E-06 CCATGTAAATCACAATGTTCTTTGCAG 27 V_WT1_Q6_01_M02036 TRANSFAC + 139876222 139876231 4.0E-06 CGCCCCCGCC 10 V_WT1_Q6_01_M02036 TRANSFAC - 139876628 139876637 4.0E-06 CGCCCCCGCC 10 V_TAL1_Q6_M00993 TRANSFAC + 139876693 139876702 3.0E-06 TCCAGCTGCT 10 V_COMP1_01_M00057 TRANSFAC - 139875193 139875216 0.0E+00 TCTTTTGATTGACAGCAGGACATT 24 V_FOXA2_02_M02853 TRANSFAC + 139877597 139877611 0.0E+00 ATAAATAACAAAACT 15 V_EN1_02_M01365 TRANSFAC + 139875001 139875016 8.0E-06 GAAAACTGATTAAGTA 16 V_MYF_01_M01302 TRANSFAC - 139876692 139876703 4.0E-06 CAGCAGCTGGAG 12 V_FREAC3_01_M00291 TRANSFAC - 139876533 139876548 0.0E+00 GGCAGGTAAATAAACC 16 V_ZFP105_03_M02827 TRANSFAC + 139877596 139877610 0.0E+00 TATAAATAACAAAAC 15 V_HNF3G_Q4_M02015 TRANSFAC + 139876302 139876309 7.0E-06 TGTTTGTT 8 V_GFI1_01_M00250 TRANSFAC - 139875071 139875094 4.0E-06 ACCATGTAAATCACAATGTTCTTT 24 V_ZBED6_01_M01598 TRANSFAC - 139876331 139876342 6.0E-06 TGGGCTCGCCTG 12 V_KROX_Q6_M00982 TRANSFAC - 139876626 139876639 4.0E-06 GCCGCCCCCGCCCG 14 V_KROX_Q6_M00982 TRANSFAC - 139877040 139877053 4.0E-06 TCCGCCCCCGCAGC 14 V_RSRFC4_Q2_M00407 TRANSFAC - 139877591 139877607 1.0E-05 TTGTTATTTATAAGCAC 17 V_AMEF2_Q6_M00403 TRANSFAC + 139876736 139876753 0.0E+00 ATCTTTAAAAAACACACA 18 V_AMEF2_Q6_M00403 TRANSFAC + 139877591 139877608 5.0E-06 GTGCTTATAAATAACAAA 18 V_NFKB_Q6_M00194 TRANSFAC + 139877182 139877195 3.0E-06 GGGGGAAGTTCCTG 14 V_FOXK1_04_M02856 TRANSFAC + 139877598 139877612 4.0E-06 TAAATAACAAAACTT 15 V_HNF3A_01_M01261 TRANSFAC - 139875907 139875916 7.0E-06 GAGTAAACAG 10 V_MAZ_Q6_01_M02023 TRANSFAC + 139875163 139875176 1.0E-06 TGGGGAGGGGGGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC - 139875741 139875756 5.0E-06 GCGGCGGCCCGAAGGG 16 V_AP2BETA_Q3_M01858 TRANSFAC + 139876186 139876201 9.0E-06 GCGAGGGGCTGCGGAC 16 V_EGR1_Q6_M01873 TRANSFAC + 139876629 139876638 4.0E-06 GCGGGGGCGG 10 V_EGR1_Q6_M01873 TRANSFAC + 139877043 139877052 4.0E-06 GCGGGGGCGG 10 V_SOX_Q6_M01014 TRANSFAC + 139875380 139875392 3.0E-06 TTCTTTGTTTAAA 13 V_HNF1_Q6_01_M01011 TRANSFAC + 139875021 139875041 4.0E-06 TGTACTTGAAAATTAAGTAAA 21 V_NKX22_02_M01372 TRANSFAC + 139875018 139875034 3.0E-06 AACTGTACTTGAAAATT 17 V_TATA_C_M00216 TRANSFAC + 139876737 139876746 3.0E-06 TCTTTAAAAA 10 V_NFE4_Q5_M02105 TRANSFAC - 139876183 139876194 8.0E-06 GCCCCTCGCCAG 12 V_OCT1_08_M01354 TRANSFAC + 139875024 139875039 6.0E-06 ACTTGAAAATTAAGTA 16 V_PIT1_01_M01465 TRANSFAC + 139875027 139875043 4.0E-06 TGAAAATTAAGTAAAAC 17 V_GR_Q6_M00192 TRANSFAC - 139875071 139875089 2.0E-06 GTAAATCACAATGTTCTTT 19 V_SOX12_04_M02900 TRANSFAC - 139875378 139875393 8.0E-06 ATTTAAACAAAGAAAC 16 V_TEF_01_M01305 TRANSFAC - 139877391 139877402 2.0E-06 CACATTCCTCCC 12 V_PBX1_05_M01967 TRANSFAC - 139875200 139875213 0.0E+00 TTTGATTGACAGCA 14 V_XFD2_01_M00268 TRANSFAC + 139877594 139877607 5.0E-06 CTTATAAATAACAA 14 V_MEF2_Q6_01_M00941 TRANSFAC - 139877595 139877606 3.0E-06 TGTTATTTATAA 12 V_NKX3A_01_M00451 TRANSFAC + 139875008 139875019 7.0E-06 GATTAAGTAAAA 12 V_NKX3A_01_M00451 TRANSFAC + 139875031 139875042 4.0E-06 AATTAAGTAAAA 12 V_SRF_Q5_02_M01007 TRANSFAC - 139875340 139875358 1.0E-06 AAAGTCCTTATTTGGGTGT 19 V_ISGF3G_03_M02771 TRANSFAC + 139877599 139877613 2.0E-06 AAATAACAAAACTTA 15 V_TBP_06_M02814 TRANSFAC + 139877592 139877607 6.0E-06 TGCTTATAAATAACAA 16 V_CTCF_02_M01259 TRANSFAC + 139875103 139875122 7.0E-06 CCTGGACCAGTAGAGGGAGA 20 V_SOX11_03_M02795 TRANSFAC - 139875377 139875393 0.0E+00 ATTTAAACAAAGAAACT 17 V_SRF_03_M01304 TRANSFAC + 139875342 139875354 2.0E-06 ACCCAAATAAGGA 13 V_ISGF4G_04_M02875 TRANSFAC + 139875014 139875027 8.0E-06 GTAAAACTGTACTT 14 V_ISGF4G_04_M02875 TRANSFAC + 139875037 139875050 5.0E-06 GTAAAACTTAACTA 14 V_OCT_Q6_M00795 TRANSFAC + 139875082 139875092 8.0E-06 TGATTTACATG 11 V_NEUROD_02_M01288 TRANSFAC + 139877252 139877263 7.0E-06 TTGCTGCTGCCC 12 V_GR_Q6_02_M01836 TRANSFAC - 139875071 139875083 2.0E-06 CACAATGTTCTTT 13 V_TBP_01_M00471 TRANSFAC + 139877596 139877603 4.0E-06 TATAAATA 8 V_BRN4_01_M01473 TRANSFAC + 139875027 139875043 4.0E-06 TGAAAATTAAGTAAAAC 17 V_OCT1_Q6_M00195 TRANSFAC - 139875081 139875095 1.0E-06 AACCATGTAAATCAC 15 V_TEF1_Q6_03_M01817 TRANSFAC + 139877393 139877401 3.0E-06 GAGGAATGT 9 V_FPM315_01_M01587 TRANSFAC + 139876881 139876892 2.0E-06 GGGGGAGGAGGC 12 V_SRF_01_M00152 TRANSFAC + 139875340 139875357 4.0E-06 ACACCCAAATAAGGACTT 18 V_SRF_01_M00152 TRANSFAC - 139875340 139875357 2.0E-06 AAGTCCTTATTTGGGTGT 18 V_PLZF_02_M01075 TRANSFAC - 139875008 139875036 1.0E-06 TTAATTTTCAAGTACAGTTTTACTTAATC 29 V_PLZF_02_M01075 TRANSFAC + 139875026 139875054 4.0E-06 TTGAAAATTAAGTAAAACTTAACTACACC 29 V_SRF_Q5_01_M00922 TRANSFAC + 139875344 139875358 1.0E-06 CCAAATAAGGACTTT 15 V_SRF_Q4_M00810 TRANSFAC + 139875343 139875360 1.0E-06 CCCAAATAAGGACTTTGG 18 V_EGR1_06_M02744 TRANSFAC - 139877040 139877053 3.0E-06 TCCGCCCCCGCAGC 14 V_SRF_02_M01257 TRANSFAC + 139875342 139875359 1.0E-06 ACCCAAATAAGGACTTTG 18 V_SOX2_01_M02246 TRANSFAC - 139877596 139877610 3.0E-06 GTTTTGTTATTTATA 15 V_SRF_06_M02916 TRANSFAC + 139876738 139876754 2.0E-06 CTTTAAAAAACACACAC 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 139876075 139876092 1.0E-06 GGAAGGAAGGCAGGCGCG 18 V_SIX6_08_M02897 TRANSFAC + 139874894 139874910 7.0E-06 ATTGGATATACAAGACT 17 V_BARHL2_01_M01446 TRANSFAC + 139875001 139875016 9.0E-06 GAAAACTGATTAAGTA 16 V_MEF2A_05_M01301 TRANSFAC - 139877595 139877606 2.0E-06 TGTTATTTATAA 12 V_CEBP_Q2_01_M00912 TRANSFAC - 139875030 139875041 5.0E-06 TTTACTTAATTT 12 V_AP2ALPHA_03_M01047 TRANSFAC + 139875633 139875647 3.0E-06 ACAGCCGCAGGCGGT 15 V_AP2ALPHA_03_M01047 TRANSFAC - 139875633 139875647 3.0E-06 ACCGCCTGCGGCTGT 15 V_NR2F2_04_M02887 TRANSFAC + 139875815 139875830 7.0E-06 CGACCCGGGTCAACCT 16 V_SOX9_Q4_M01284 TRANSFAC - 139875379 139875389 3.0E-06 AAACAAAGAAA 11 V_PAX2_02_M00486 TRANSFAC - 139876532 139876540 8.0E-06 AATAAACCC 9 V_PPARA_01_M00242 TRANSFAC - 139875126 139875145 6.0E-06 CAAGACCAGGCCAGATGTCT 20 V_NANOG_02_M01247 TRANSFAC + 139877596 139877615 3.0E-06 TATAAATAACAAAACTTAGC 20 V_OCT4_01_M01125 TRANSFAC - 139877595 139877609 4.0E-06 TTTTGTTATTTATAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.