Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

BHLHB9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 80823 basic helix-loop-helix domain containing, class B, 9 chrX + 101970641 - 101976141 101975641 Transcription Factor Binding Sites   Download all TFBS in the BHLHB9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_14_1 SELEX + 101975591 101975604 5.0E-06 TGACTGCGCAGTCA 14 SOX10_HMG_full_dimeric_14_1 SELEX - 101975591 101975604 5.0E-06 TGACTGCGCAGTCA 14 SOX10_HMG_full_dimeric_15_3 SELEX - 101975552 101975566 6.0E-06 ATGGATGACAGTCTT 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 101978603 101978617 7.0E-06 TTGTTATGCTAATGA 15 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 101978607 101978615 4.0E-06 TATGCTAAT 9 SOX9_HMG_full_dimeric_17_3 SELEX - 101975551 101975567 5.0E-06 CATGGATGACAGTCTTC 17 POU2F3_POU_DBD_monomeric_9_1 SELEX + 101978607 101978615 3.0E-06 TATGCTAAT 9 POU1F1_POU_DBD_monomeric_14_1 SELEX + 101978605 101978618 0.0E+00 GTTATGCTAATGAA 14 SOX7_HMG_full_dimeric_17_2 SELEX - 101975551 101975567 6.0E-06 CATGGATGACAGTCTTC 17 SOX8_HMG_DBD_dimeric_14_1 SELEX + 101975591 101975604 9.0E-06 TGACTGCGCAGTCA 14 SOX8_HMG_DBD_dimeric_14_1 SELEX - 101975591 101975604 9.0E-06 TGACTGCGCAGTCA 14 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 101978739 101978756 9.0E-06 TAGGTATTAAGTTCAATC 18 POU2F2_POU_DBD_monomeric_11_1 SELEX + 101978606 101978616 1.0E-06 TTATGCTAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 101978607 101978615 3.0E-06 TATGCTAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 101978607 101978615 3.0E-06 TATGCTAAT 9 REL_MA0101.1 JASPAR + 101978575 101978584 6.0E-06 TGGAATTTCC 10 POU3F3_POU_DBD_monomeric_13_1 SELEX + 101978605 101978617 1.0E-06 GTTATGCTAATGA 13 SOX8_HMG_full_dimeric_13_1 SELEX - 101975554 101975566 7.0E-06 ATGGATGACAGTC 13 RELA_MA0107.1 JASPAR + 101978575 101978584 3.0E-06 TGGAATTTCC 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 101975622 101975631 8.0E-06 GTCACATGAC 10 POU3F1_POU_DBD_monomeric_12_1 SELEX + 101978606 101978617 0.0E+00 TTATGCTAATGA 12 FEV_MA0156.1 JASPAR - 101978579 101978586 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR + 101978601 101978615 0.0E+00 CTTTGTTATGCTAAT 15 POU2F1_POU_DBD_monomeric_12_1 SELEX + 101978605 101978616 3.0E-06 GTTATGCTAATG 12 SOX18_HMG_full_dimeric_15_3 SELEX + 101975552 101975566 7.0E-06 AAGACTGTCATCCAT 15 POU3F2_POU_DBD_monomeric_12_1 SELEX + 101978606 101978617 0.0E+00 TTATGCTAATGA 12 Sox2_MA0143.1 JASPAR + 101978600 101978614 0.0E+00 TCTTTGTTATGCTAA 15 V_FOXP1_01_M00987 TRANSFAC + 101975370 101975389 3.0E-06 ATCTGTGTGTGTTTTAGTAT 20 V_NFKAPPAB65_01_M00052 TRANSFAC + 101978575 101978584 1.0E-06 TGGAATTTCC 10 V_TCF3_01_M01594 TRANSFAC + 101978600 101978612 0.0E+00 TCTTTGTTATGCT 13 V_AREB6_03_M00414 TRANSFAC + 101975698 101975709 9.0E-06 CGACACCTGTGC 12 V_HMGIY_Q3_M01010 TRANSFAC + 101978573 101978587 3.0E-06 CTTGGAATTTCCTGT 15 V_POU5F1_02_M02245 TRANSFAC + 101978601 101978615 0.0E+00 CTTTGTTATGCTAAT 15 V_EBOX_Q6_01_M01034 TRANSFAC - 101975600 101975609 4.0E-06 CCACGTGACT 10 V_FOXJ1_04_M02854 TRANSFAC - 101978600 101978614 8.0E-06 TTAGCATAACAAAGA 15 V_OCT1_01_M00135 TRANSFAC + 101978602 101978620 4.0E-06 TTTGTTATGCTAATGAAGT 19 V_POU2F3_01_M01476 TRANSFAC + 101978604 101978619 1.0E-06 TGTTATGCTAATGAAG 16 V_POU3F2_02_M00464 TRANSFAC + 101978606 101978615 1.0E-06 TTATGCTAAT 10 V_OCT_C_M00210 TRANSFAC - 101978606 101978618 1.0E-06 TTCATTAGCATAA 13 V_CETS1P54_02_M00074 TRANSFAC - 101978577 101978589 1.0E-06 ACACAGGAAATTC 13 V_BEL1_B_M00312 TRANSFAC + 101975584 101975611 3.0E-06 AACAAGCTGACTGCGCAGTCACGTGGGG 28 V_CREL_01_M00053 TRANSFAC + 101978575 101978584 6.0E-06 TGGAATTTCC 10 V_SOX_Q6_M01014 TRANSFAC + 101978599 101978611 0.0E+00 ATCTTTGTTATGC 13 V_OCT1_04_M00138 TRANSFAC + 101978600 101978622 1.0E-06 TCTTTGTTATGCTAATGAAGTGA 23 V_OCT1_08_M01354 TRANSFAC + 101978606 101978621 1.0E-05 TTATGCTAATGAAGTG 16 V_OCT4_02_M01124 TRANSFAC + 101978602 101978616 0.0E+00 TTTGTTATGCTAATG 15 V_AP1_Q2_01_M00924 TRANSFAC + 101978620 101978631 5.0E-06 TGACTTATGGTG 12 V_OCT_Q6_M00795 TRANSFAC - 101978607 101978617 8.0E-06 TCATTAGCATA 11 V_GCNF_01_M00526 TRANSFAC + 101978744 101978761 6.0E-06 ATTAAGTTCAATCACAAC 18 V_MYOD_01_M00001 TRANSFAC - 101975698 101975709 7.0E-06 GCACAGGTGTCG 12 V_CIZ_01_M00734 TRANSFAC + 101978565 101978573 4.0E-06 CAAAAAATC 9 V_OCT2_01_M01368 TRANSFAC + 101978604 101978619 0.0E+00 TGTTATGCTAATGAAG 16 V_TFEB_01_M01768 TRANSFAC + 101975622 101975631 8.0E-06 GTCATGTGAC 10 V_TFEB_01_M01768 TRANSFAC - 101975622 101975631 8.0E-06 GTCACATGAC 10 V_FOXL1_02_M02857 TRANSFAC - 101978599 101978614 6.0E-06 TTAGCATAACAAAGAT 16 V_FOXJ3_06_M02855 TRANSFAC - 101978599 101978615 0.0E+00 ATTAGCATAACAAAGAT 17 V_TCF7L2_04_M02922 TRANSFAC + 101978746 101978761 9.0E-06 TAAGTTCAATCACAAC 16 V_SOX2_01_M02246 TRANSFAC + 101978600 101978614 0.0E+00 TCTTTGTTATGCTAA 15 V_SOX2_Q6_M01272 TRANSFAC + 101978596 101978611 0.0E+00 AGTATCTTTGTTATGC 16 V_PIT1_Q6_M00802 TRANSFAC - 101978603 101978620 4.0E-06 ACTTCATTAGCATAACAA 18 V_FREAC4_01_M00292 TRANSFAC + 101975825 101975840 8.0E-06 GTAAAGGAAACAATCC 16 V_TFE_Q6_M01029 TRANSFAC + 101975623 101975630 1.0E-05 TCATGTGA 8 V_FEV_01_M02269 TRANSFAC - 101978579 101978586 1.0E-05 CAGGAAAT 8 V_NANOG_02_M01247 TRANSFAC - 101978595 101978614 0.0E+00 TTAGCATAACAAAGATACTC 20 V_OCT4_01_M01125 TRANSFAC + 101978601 101978615 0.0E+00 CTTTGTTATGCTAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.