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RNF39 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 80352 ring finger protein 39 chr6 - 30043128 - 30048628 30043628 Transcription Factor Binding Sites   Download all TFBS in the RNF39 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 30047691 30047701 1.0E-06 AATGACTCATT 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 30047691 30047701 2.0E-06 AATGAGTCATT 11 CTCF_MA0139.1 JASPAR + 30043713 30043731 1.0E-06 CGGTCACTAGAGGGCGCTC 19 Foxa2_MA0047.2 JASPAR + 30047718 30047729 1.0E-06 TGTTTACACTGT 12 SPIC_ETS_full_monomeric_14_1 SELEX - 30044432 30044445 1.0E-06 AAAATCAGGAAGCA 14 FOXA1_MA0148.1 JASPAR + 30047718 30047728 1.0E-06 TGTTTACACTG 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 30042326 30042342 3.0E-06 AATAACAATAACAAACA 17 FOXO3_MA0157.1 JASPAR - 30047718 30047725 7.0E-06 TGTAAACA 8 FOXD1_MA0031.1 JASPAR - 30047717 30047724 7.0E-06 GTAAACAT 8 TBX20_TBX_DBD_dimeric_19_1 SELEX + 30043674 30043692 9.0E-06 AGGGGAGAATAGCACACCT 19 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 30047717 30047727 5.0E-06 AGTGTAAACAT 11 EWSR1-FLI1_MA0149.1 JASPAR - 30042415 30042432 1.0E-05 GGAAGGGAGCAAGGGGTT 18 EWSR1-FLI1_MA0149.1 JASPAR - 30042419 30042436 1.0E-06 TGGAGGAAGGGAGCAAGG 18 SPIB_ETS_DBD_monomeric_14_1 SELEX - 30044432 30044445 4.0E-06 AAAATCAGGAAGCA 14 TBX1_TBX_DBD_dimeric_19_1 SELEX + 30043674 30043692 0.0E+00 AGGGGAGAATAGCACACCT 19 TBX1_TBX_DBD_dimeric_19_1 SELEX - 30043674 30043692 1.0E-06 AGGTGTGCTATTCTCCCCT 19 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 30042332 30042345 7.0E-06 AATAACAAACAACA 14 SP1_MA0079.2 JASPAR + 30042450 30042459 9.0E-06 CCCCTCCTCC 10 CTCF_C2H2_full_monomeric_17_1 SELEX - 30043714 30043730 0.0E+00 AGCGCCCTCTAGTGACC 17 RFX2_RFX_DBD_dimeric_16_1 SELEX + 30047682 30047697 8.0E-06 TGTTTCTATAATGACT 16 TBX15_TBX_DBD_dimeric_19_1 SELEX + 30043674 30043692 1.0E-06 AGGGGAGAATAGCACACCT 19 TBX15_TBX_DBD_dimeric_19_1 SELEX - 30043674 30043692 3.0E-06 AGGTGTGCTATTCTCCCCT 19 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 30047690 30047702 5.0E-06 TAATGACTCATTT 13 JDP2_bZIP_full_dimeric_9_1 SELEX + 30047692 30047700 2.0E-06 ATGACTCAT 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 30047692 30047700 4.0E-06 ATGAGTCAT 9 Pou5f1_MA0142.1 JASPAR + 30044401 30044415 7.0E-06 TTTTCAGTTGCAGAT 15 SPI1_ETS_full_monomeric_14_1 SELEX - 30044432 30044445 4.0E-06 AAAATCAGGAAGCA 14 FOXB1_forkhead_full_monomeric_9_1 SELEX - 30047717 30047725 3.0E-06 TGTAAACAT 9 PLAG1_MA0163.1 JASPAR + 30039359 30039372 9.0E-06 GGGGCCGTCAGGGG 14 PLAG1_MA0163.1 JASPAR - 30043765 30043778 8.0E-06 GGGGGTCACAGGGG 14 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 30047717 30047727 4.0E-06 AGTGTAAACAT 11 RREB1_MA0073.1 JASPAR + 30042476 30042495 0.0E+00 CCCCAACCCACCAGCCCAGC 20 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 30042332 30042345 5.0E-06 AATAACAAACAACA 14 V_FOXP1_01_M00987 TRANSFAC - 30042324 30042343 3.0E-06 TTGTTTGTTATTGTTATTTC 20 V_SPI1_01_M01203 TRANSFAC - 30044429 30044445 1.0E-06 AAAATCAGGAAGCAGGA 17 V_AP1_Q2_M00173 TRANSFAC + 30047691 30047701 6.0E-06 AATGACTCATT 11 V_TBX15_01_M01263 TRANSFAC + 30043674 30043692 1.0E-06 AGGGGAGAATAGCACACCT 19 V_TBX15_01_M01263 TRANSFAC - 30043674 30043692 1.0E-06 AGGTGTGCTATTCTCCCCT 19 V_TBX15_01_M01263 TRANSFAC - 30043974 30043992 1.0E-05 AGGAATGAAAACCACACAT 19 V_FOXO3_02_M02270 TRANSFAC - 30047718 30047725 7.0E-06 TGTAAACA 8 V_BCL6_01_M01183 TRANSFAC - 30042325 30042340 4.0E-06 TTTGTTATTGTTATTT 16 V_POU5F1_02_M02245 TRANSFAC + 30044401 30044415 7.0E-06 TTTTCAGTTGCAGAT 15 V_SOX5_01_M00042 TRANSFAC + 30042327 30042336 4.0E-06 ATAACAATAA 10 V_SP1_Q6_01_M00931 TRANSFAC + 30043733 30043742 7.0E-06 GGGGCGGGGT 10 V_DR4_Q2_M00965 TRANSFAC - 30043712 30043728 7.0E-06 CGCCCTCTAGTGACCGC 17 V_EGR_Q6_M00807 TRANSFAC - 30039204 30039214 1.0E-05 GTGGGCGCGGC 11 V_SP1_03_M02281 TRANSFAC + 30042450 30042459 9.0E-06 CCCCTCCTCC 10 V_PU1_Q4_M01172 TRANSFAC + 30044426 30044444 3.0E-06 CCCTCCTGCTTCCTGATTT 19 V_TCFAP2E_04_M02926 TRANSFAC - 30044441 30044454 3.0E-06 CACCAGAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 30047698 30047711 2.0E-06 TCCTTAAAAAAATG 14 V_BARBIE_01_M00238 TRANSFAC - 30042457 30042471 3.0E-06 AGAAAAAGCTGGGGA 15 V_AP1_Q6_M00174 TRANSFAC + 30047691 30047701 0.0E+00 AATGACTCATT 11 V_SRF_C_M00215 TRANSFAC + 30044024 30044038 9.0E-06 ACCTATTAAGGGCTT 15 V_ELF4_04_M02850 TRANSFAC - 30047697 30047713 8.0E-06 AGTCCTTAAAAAAATGA 17 V_BACH1_01_M00495 TRANSFAC - 30047689 30047703 0.0E+00 AAAATGAGTCATTAT 15 V_SOX13_03_M02797 TRANSFAC + 30042324 30042339 8.0E-06 GAAATAACAATAACAA 16 V_ZNF219_01_M01122 TRANSFAC + 30042473 30042484 9.0E-06 CGCCCCCAACCC 12 V_SOX7_03_M02807 TRANSFAC + 30042322 30042343 0.0E+00 CCGAAATAACAATAACAAACAA 22 V_FOXA2_02_M02853 TRANSFAC + 30042323 30042337 3.0E-06 CGAAATAACAATAAC 15 V_FOXA2_02_M02853 TRANSFAC + 30042329 30042343 1.0E-06 AACAATAACAAACAA 15 V_TBX18_01_M01262 TRANSFAC - 30043674 30043692 0.0E+00 AGGTGTGCTATTCTCCCCT 19 V_TBX18_01_M01262 TRANSFAC - 30043974 30043992 8.0E-06 AGGAATGAAAACCACACAT 19 V_FOXO1_02_M00474 TRANSFAC + 30047714 30047727 8.0E-06 TGGATGTTTACACT 14 V_HNF3G_Q4_M02015 TRANSFAC - 30042335 30042342 7.0E-06 TGTTTGTT 8 V_SOX1_04_M02906 TRANSFAC - 30042325 30042339 1.0E-06 TTGTTATTGTTATTT 15 V_XFD3_01_M00269 TRANSFAC - 30047714 30047727 1.0E-06 AGTGTAAACATCCA 14 V_SPDEF_03_M02811 TRANSFAC + 30044431 30044446 1.0E-06 CTGCTTCCTGATTTTT 16 V_KROX_Q6_M00982 TRANSFAC + 30042471 30042484 3.0E-06 TCCGCCCCCAACCC 14 V_AP1_Q6_01_M00925 TRANSFAC + 30047692 30047700 4.0E-06 ATGACTCAT 9 V_HOXA3_07_M02869 TRANSFAC + 30047746 30047759 8.0E-06 AAATTCTATTAGAC 14 V_AP1_Q4_M00188 TRANSFAC + 30047691 30047701 8.0E-06 AATGACTCATT 11 V_FOXK1_04_M02856 TRANSFAC + 30042324 30042338 8.0E-06 GAAATAACAATAACA 15 V_FOXK1_04_M02856 TRANSFAC + 30042327 30042341 0.0E+00 ATAACAATAACAAAC 15 V_HNF3A_01_M01261 TRANSFAC - 30047717 30047726 3.0E-06 GTGTAAACAT 10 V_MAZ_Q6_01_M02023 TRANSFAC - 30042449 30042462 4.0E-06 TGGGGAGGAGGGGA 14 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 30042332 30042342 4.0E-06 TGTTTGTTATT 11 V_JUNDM2_04_M02876 TRANSFAC + 30047688 30047703 2.0E-06 TATAATGACTCATTTT 16 V_JUNDM2_04_M02876 TRANSFAC - 30047689 30047704 3.0E-06 AAAAATGAGTCATTAT 16 V_GRE_C_M00205 TRANSFAC + 30047718 30047733 8.0E-06 TGTTTACACTGTGCTT 16 V_SPIB_01_M01204 TRANSFAC - 30044429 30044445 1.0E-06 AAAATCAGGAAGCAGGA 17 V_RREB1_01_M00257 TRANSFAC + 30042476 30042489 3.0E-06 CCCCAACCCACCAG 14 V_AP1_C_M00199 TRANSFAC - 30047692 30047700 8.0E-06 ATGAGTCAT 9 V_XFD2_01_M00268 TRANSFAC - 30047714 30047727 3.0E-06 AGTGTAAACATCCA 14 V_CDC5_01_M00478 TRANSFAC + 30047730 30047741 2.0E-06 GCTTTAACATAG 12 V_AP1_01_M00517 TRANSFAC - 30047690 30047702 5.0E-06 AAATGAGTCATTA 13 V_SP1_01_M00008 TRANSFAC + 30043733 30043742 3.0E-06 GGGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC + 30043710 30043729 1.0E-06 AGGCGGTCACTAGAGGGCGC 20 V_OCT4_02_M01124 TRANSFAC + 30044402 30044416 3.0E-06 TTTCAGTTGCAGATC 15 V_CTCF_01_M01200 TRANSFAC + 30043712 30043731 2.0E-06 GCGGTCACTAGAGGGCGCTC 20 V_AP1_Q2_01_M00924 TRANSFAC + 30047693 30047704 2.0E-06 TGACTCATTTTT 12 V_AP1_Q4_01_M00926 TRANSFAC - 30047692 30047699 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC + 30042325 30042338 8.0E-06 AAATAACAATAACA 14 V_FAC1_01_M00456 TRANSFAC + 30042329 30042342 4.0E-06 AACAATAACAAACA 14 V_CNOT3_01_M01253 TRANSFAC + 30039203 30039212 8.0E-06 GGCCGCGCCC 10 V_FRA1_Q5_M01267 TRANSFAC - 30047692 30047699 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC + 30043580 30043591 2.0E-06 GAGGGAGGAGGC 12 V_ASCL2_04_M02841 TRANSFAC - 30043667 30043682 4.0E-06 TTCTCCCCTCCCTGCT 16 V_MTATA_B_M00320 TRANSFAC - 30043564 30043580 1.0E-06 CCCTATAAAGCCTGATG 17 V_SRF_01_M00152 TRANSFAC - 30044021 30044038 7.0E-06 AAGCCCTTAATAGGTAAG 18 V_FOXA2_03_M02260 TRANSFAC + 30047718 30047729 1.0E-06 TGTTTACACTGT 12 V_FOX_Q2_M00809 TRANSFAC - 30042333 30042345 6.0E-06 TGTTGTTTGTTAT 13 V_TBX22_01_M01195 TRANSFAC - 30043674 30043692 1.0E-06 AGGTGTGCTATTCTCCCCT 19 V_SOX8_03_M02808 TRANSFAC - 30042324 30042340 3.0E-06 TTTGTTATTGTTATTTC 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 30042415 30042432 1.0E-05 GGAAGGGAGCAAGGGGTT 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 30042419 30042436 1.0E-06 TGGAGGAAGGGAGCAAGG 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 30043977 30043984 1.0E-05 TGTGGTTT 8 V_IPF1_Q4_01_M01013 TRANSFAC - 30047685 30047699 8.0E-06 TGAGTCATTATAGAA 15 V_SOX2_Q6_M01272 TRANSFAC - 30042325 30042340 4.0E-06 TTTGTTATTGTTATTT 16 V_HNF3B_Q6_M02014 TRANSFAC - 30042335 30042343 1.0E-05 TTGTTTGTT 9 V_SOX12_03_M02796 TRANSFAC - 30042323 30042336 5.0E-06 TTATTGTTATTTCG 14 V_TCF3_05_M02920 TRANSFAC + 30042320 30042334 4.0E-06 AGCCGAAATAACAAT 15 V_RFX1_02_M00281 TRANSFAC - 30047681 30047698 3.0E-06 GAGTCATTATAGAAACAA 18 V_NANOG_02_M01247 TRANSFAC + 30042328 30042347 8.0E-06 TAACAATAACAAACAACACA 20 V_OCT4_01_M01125 TRANSFAC + 30044401 30044415 1.0E-05 TTTTCAGTTGCAGAT 15 V_TCF11_01_M00285 TRANSFAC - 30047684 30047696 8.0E-06 GTCATTATAGAAA 13

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