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LHX3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 8022 LIM homeobox 3 chr9 - 139094504 - 139101955 139095004 Lhx3_MA0135.1 V_LHX3_01_M01471 V_LHX3A_01_M00510 V_LHX3b_01_M01971 Transcription Factor Binding Sites   Download all TFBS in the LHX3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX + 139098896 139098906 5.0E-06 AAAGTGTGAAA 11 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 139098658 139098670 9.0E-06 GTAAACCACAACA 13 MYF6_bHLH_full_dimeric_10_1 SELEX - 139099029 139099038 3.0E-06 AACAACTGTC 10 Myc_MA0147.1 JASPAR + 139090800 139090809 4.0E-06 CGCACGTGGC 10 TBR1_TBX_DBD_monomeric_10_1 SELEX + 139098897 139098906 2.0E-06 AAGTGTGAAA 10 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 139098676 139098693 1.0E-06 CCAGGTCACTCCAGGTCA 18 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX + 139098677 139098693 6.0E-06 CAGGTCACTCCAGGTCA 17 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 139098677 139098693 0.0E+00 CAGGTCACTCCAGGTCA 17 EWSR1-FLI1_MA0149.1 JASPAR + 139090724 139090741 6.0E-06 GGCGGGAGGGAAGCAGGG 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 139098676 139098693 5.0E-06 CCAGGTCACTCCAGGTCA 18 RUNX3_RUNX_DBD_dimeric_16_1 SELEX + 139098576 139098591 6.0E-06 TGACCTCAAACTGCAA 16 NR2F1_MA0017.1 JASPAR - 139098724 139098737 6.0E-06 TAAACTTTAGCCTT 14 RUNX3_RUNX_full_monomeric_10_1 SELEX + 139098660 139098669 7.0E-06 AAACCACAAC 10 EOMES_TBX_DBD_monomeric_13_1 SELEX + 139098896 139098908 3.0E-06 AAAGTGTGAAACC 13 RUNX2_RUNX_DBD_monomeric_9_1 SELEX + 139098660 139098668 8.0E-06 AAACCACAA 9 RUNX2_RUNX_DBD_dimeric_16_1 SELEX + 139098576 139098591 3.0E-06 TGACCTCAAACTGCAA 16 Foxq1_MA0040.1 JASPAR + 139098729 139098739 9.0E-06 TAAAGTTTAGT 11 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 139098677 139098693 0.0E+00 CAGGTCACTCCAGGTCA 17 TBR1_TBX_full_monomeric_11_1 SELEX + 139098896 139098906 1.0E-06 AAAGTGTGAAA 11 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 139098677 139098693 2.0E-06 CAGGTCACTCCAGGTCA 17 Mycn_MA0104.2 JASPAR + 139090800 139090809 5.0E-06 CGCACGTGGC 10 TBX21_TBX_full_monomeric_10_1 SELEX + 139098896 139098905 3.0E-06 AAAGTGTGAA 10 TBX2_TBX_full_monomeric_11_1 SELEX + 139098896 139098906 2.0E-06 AAAGTGTGAAA 11 Myf_MA0055.1 JASPAR - 139090850 139090861 2.0E-06 AAGCAGCTGGAG 12 HNF4A_MA0114.1 JASPAR + 139098725 139098737 8.0E-06 AGGCTAAAGTTTA 13 TBX20_TBX_DBD_monomeric_15_1 SELEX + 139098893 139098907 2.0E-06 TAAAAAGTGTGAAAC 15 RUNX1_MA0002.2 JASPAR - 139098660 139098670 3.0E-06 TGTTGTGGTTT 11 REST_MA0138.2 JASPAR + 139093757 139093777 1.0E-06 TTCAGCACCGCGGACCGGACA 21 REST_MA0138.2 JASPAR - 139096981 139097001 0.0E+00 TTCAGCACCGCGGACAGCGCC 21 TBX1_TBX_DBD_dimeric_20_1 SELEX + 139098887 139098906 3.0E-06 AGGGGTTAAAAAGTGTGAAA 20 V_AML_Q6_M00769 TRANSFAC - 139098658 139098672 8.0E-06 GGTGTTGTGGTTTAC 15 V_NRSF_Q4_M01028 TRANSFAC - 139093758 139093776 1.0E-06 GTCCGGTCCGCGGTGCTGA 19 V_NRSF_Q4_M01028 TRANSFAC + 139096982 139097000 0.0E+00 GCGCTGTCCGCGGTGCTGA 19 V_SREBP2_Q6_M01177 TRANSFAC + 139098688 139098699 3.0E-06 AGGTCACCCCAG 12 V_BCL6_01_M01183 TRANSFAC - 139098730 139098745 5.0E-06 CTTCAAACTAAACTTT 16 V_AML3_Q6_M01856 TRANSFAC + 139098661 139098668 1.0E-05 AACCACAA 8 V_EOMES_03_M02747 TRANSFAC + 139098893 139098909 0.0E+00 TAAAAAGTGTGAAACCA 17 V_DR4_Q2_M00965 TRANSFAC - 139098677 139098693 1.0E-06 TGACCTGGAGTGACCTG 17 V_ISL2_01_M01328 TRANSFAC + 139093164 139093179 8.0E-06 CAAAATTACTTATGAG 16 V_TBR2_01_M01774 TRANSFAC + 139098897 139098905 1.0E-05 AAGTGTGAA 9 V_IRF_Q6_01_M00972 TRANSFAC + 139090357 139090367 1.0E-05 GTAAGTGAAAT 11 V_HNF4A_03_M02220 TRANSFAC + 139098725 139098737 8.0E-06 AGGCTAAAGTTTA 13 V_HEN1_01_M00068 TRANSFAC - 139099039 139099060 9.0E-06 AAAGGCAACAGCTGATTCTTTC 22 V_NRSE_B_M00325 TRANSFAC + 139093757 139093777 1.0E-06 TTCAGCACCGCGGACCGGACA 21 V_NRSE_B_M00325 TRANSFAC - 139096981 139097001 0.0E+00 TTCAGCACCGCGGACAGCGCC 21 V_MYC_01_M02250 TRANSFAC + 139090800 139090809 4.0E-06 CGCACGTGGC 10 V_CP2_02_M00947 TRANSFAC + 139097115 139097129 6.0E-06 GCTGGGTTGGGCCGC 15 RXRA_VDR_MA0074.1 JASPAR + 139098737 139098751 3.0E-06 AGTTTGAAGGGTTCA 15 V_TAL1_Q6_M00993 TRANSFAC + 139090851 139090860 3.0E-06 TCCAGCTGCT 10 V_MYF_01_M01302 TRANSFAC - 139090850 139090861 2.0E-06 AAGCAGCTGGAG 12 V_RUNX1_01_M02257 TRANSFAC - 139098660 139098670 3.0E-06 TGTTGTGGTTT 11 V_RXRA_03_M02791 TRANSFAC + 139098571 139098587 7.0E-06 AGTGGTGACCTCAAACT 17 V_COUP_01_M00158 TRANSFAC - 139098724 139098737 6.0E-06 TAAACTTTAGCCTT 14 V_AML2_01_M01759 TRANSFAC + 139098661 139098668 1.0E-05 AACCACAA 8 V_FOXK1_04_M02856 TRANSFAC + 139098659 139098673 3.0E-06 TAAACCACAACACCG 15 V_LXR_DR4_Q3_M00766 TRANSFAC - 139098678 139098693 8.0E-06 TGACCTGGAGTGACCT 16 V_SREBP_Q6_M01168 TRANSFAC + 139098687 139098701 7.0E-06 CAGGTCACCCCAGCT 15 V_SFPI1_04_M02896 TRANSFAC - 139098559 139098572 6.0E-06 CTATTTGGGGAACA 14 V_REST_01_M01256 TRANSFAC + 139096977 139096998 0.0E+00 GCCTGGCGCTGTCCGCGGTGCT 22 V_HFH1_01_M00129 TRANSFAC + 139098729 139098740 3.0E-06 TAAAGTTTAGTT 12 V_HNF4A_Q6_01_M02016 TRANSFAC + 139098747 139098761 6.0E-06 GTTCAAAGGCAAATA 15 V_MYCN_01_M02259 TRANSFAC + 139090800 139090809 5.0E-06 CGCACGTGGC 10 V_SP3_Q3_M00665 TRANSFAC - 139098618 139098631 0.0E+00 ACCCTTGTGGAGGG 14 V_GLI3_01_M01596 TRANSFAC + 139095835 139095845 7.0E-06 GTGGGTGGCCC 11 V_T3R_01_M00239 TRANSFAC - 139098571 139098586 3.0E-06 GTTTGAGGTCACCACT 16 V_HEN1_02_M00058 TRANSFAC + 139099039 139099060 5.0E-06 GAAAGAATCAGCTGTTGCCTTT 22 V_HEN1_02_M00058 TRANSFAC - 139099039 139099060 1.0E-05 AAAGGCAACAGCTGATTCTTTC 22 V_MYCMAX_B_M00322 TRANSFAC - 139090800 139090809 7.0E-06 GCCACGTGCG 10 NR1H2_RXRA_MA0115.1 JASPAR + 139098744 139098760 9.0E-06 AGGGTTCAAAGGCAAAT 17 V_NRSF_01_M00256 TRANSFAC + 139093757 139093777 1.0E-06 TTCAGCACCGCGGACCGGACA 21 V_NRSF_01_M00256 TRANSFAC - 139096981 139097001 0.0E+00 TTCAGCACCGCGGACAGCGCC 21 V_TCF4_Q5_M00671 TRANSFAC - 139098748 139098755 1.0E-05 CCTTTGAA 8 V_REST_02_M02256 TRANSFAC + 139093757 139093777 1.0E-06 TTCAGCACCGCGGACCGGACA 21 V_REST_02_M02256 TRANSFAC - 139096981 139097001 0.0E+00 TTCAGCACCGCGGACAGCGCC 21 V_T3RBETA_Q6_01_M02119 TRANSFAC + 139098678 139098694 5.0E-06 AGGTCACTCCAGGTCAC 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 139090724 139090741 6.0E-06 GGCGGGAGGGAAGCAGGG 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 139098660 139098667 1.0E-05 TGTGGTTT 8 V_CP2_01_M00072 TRANSFAC - 139097116 139097126 6.0E-06 GCCCAACCCAG 11 V_HNF4_01_M00134 TRANSFAC + 139098722 139098740 1.0E-06 AAAAGGCTAAAGTTTAGTT 19 V_RNF96_01_M01199 TRANSFAC - 139090717 139090726 7.0E-06 GCCCGCGGCC 10 V_BHLHB2_04_M02845 TRANSFAC - 139098763 139098785 4.0E-06 CAGGTTTACACGTGGGTTTCAGT 23 V_VDRRXR_01_M01202 TRANSFAC + 139098737 139098751 3.0E-06 AGTTTGAAGGGTTCA 15 V_AP2_Q3_M00800 TRANSFAC + 139090717 139090732 9.0E-06 GGCCGCGGGCGGGAGG 16 V_T3RALPHA_Q6_M01724 TRANSFAC - 139098575 139098585 3.0E-06 TTTGAGGTCAC 11

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