Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C16orf59 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 80178 chromosome 16 open reading frame 59 chr16 + 2505114 - 2510614 2510114 Transcription Factor Binding Sites   Download all TFBS in the C16orf59 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SP8_C2H2_DBD_monomeric_12_1 SELEX - 2509977 2509988 5.0E-06 GCCCCGCCCACT 12 SP8_C2H2_DBD_monomeric_12_1 SELEX - 2510093 2510104 5.0E-06 GCCACGCCCCTT 12 SP3_C2H2_DBD_monomeric_11_1 SELEX - 2510094 2510104 1.0E-05 GCCACGCCCCT 11 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX + 2513796 2513806 7.0E-06 TCTCATAAAAG 11 SPIC_ETS_full_monomeric_14_1 SELEX + 2513639 2513652 0.0E+00 AAAAAGAGAAAGTA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 2510094 2510104 7.0E-06 GCCACGCCCCT 11 MEF2D_MADS_DBD_dimeric_12_1 SELEX - 2513705 2513716 1.0E-06 TCTATAAATAAC 12 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 2510092 2510105 2.0E-06 AGCCACGCCCCTTC 14 YY1_C2H2_full_monomeric_11_1 SELEX - 2509854 2509864 8.0E-06 GGCGCCATTAT 11 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 2510330 2510341 9.0E-06 CAATTGCAATTG 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 2510330 2510341 9.0E-06 CAATTGCAATTG 12 TBP_MA0108.2 JASPAR - 2513701 2513715 1.0E-05 CTATAAATAACCACC 15 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 2513705 2513716 0.0E+00 TCTATAAATAAC 12 GCM1_GCM_full_dimeric_16_1 SELEX + 2509854 2509869 7.0E-06 ATAATGGCGCCCCCAT 16 GCM1_GCM_full_dimeric_16_1 SELEX - 2509854 2509869 9.0E-06 ATGGGGGCGCCATTAT 16 KLF13_C2H2_full_monomeric_18_1 SELEX - 2510089 2510106 1.0E-06 GAGCCACGCCCCTTCCGG 18 MEF2B_MADS_full_dimeric_12_1 SELEX - 2513705 2513716 1.0E-06 TCTATAAATAAC 12 USF1_bHLH_DBD_dimeric_10_1 SELEX + 2507615 2507624 9.0E-06 GACACGTGAC 10 HMX3_homeodomain_DBD_monomeric_11_1 SELEX - 2513738 2513748 7.0E-06 AGCAATTAGAA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 2513703 2513713 4.0E-06 ATAAATAACCA 11 MEF2A_MA0052.1 JASPAR + 2513706 2513715 1.0E-06 TTATTTATAG 10 SP4_C2H2_full_monomeric_17_1 SELEX - 2509975 2509991 0.0E+00 CAAGCCCCGCCCACTCC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 2510091 2510107 4.0E-06 AGAGCCACGCCCCTTCC 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 2509978 2509988 1.0E-05 GCCCCGCCCAC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 2513703 2513713 9.0E-06 ATAAATAACCA 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 2513639 2513653 1.0E-06 AAAAAGAGAAAGTAG 15 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 2513796 2513806 6.0E-06 TCTCATAAAAG 11 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 2513797 2513805 1.0E-05 CTCATAAAA 9 SPI1_ETS_full_monomeric_14_1 SELEX + 2513639 2513652 2.0E-06 AAAAAGAGAAAGTA 14 REST_MA0138.2 JASPAR - 2510244 2510264 0.0E+00 CTCAGCACCTCGGCCAGCGTC 21 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 2507615 2507624 8.0E-06 GACACGTGAC 10 HMX1_homeodomain_DBD_monomeric_11_1 SELEX - 2513738 2513748 1.0E-05 AGCAATTAGAA 11 V_FOXP1_01_M00987 TRANSFAC - 2513633 2513652 4.0E-06 TACTTTCTCTTTTTTTTTTT 20 V_USF_Q6_M00187 TRANSFAC - 2507615 2507624 4.0E-06 GTCACGTGTC 10 V_TCF3_01_M01594 TRANSFAC + 2513728 2513740 6.0E-06 CCTTTGTATTTTC 13 V_CDX2_Q5_01_M01659 TRANSFAC - 2513706 2513716 1.0E-06 TCTATAAATAA 11 V_ZFX_01_M01593 TRANSFAC - 2510169 2510184 1.0E-06 GCGCAGGCCTCACCGG 16 V_NF1A_Q6_M02103 TRANSFAC - 2507591 2507606 4.0E-06 TGGGCCTGTGGCCAAG 16 V_ETS_B_M00340 TRANSFAC - 2513717 2513730 9.0E-06 AGGAGGAAACAAGT 14 V_MMEF2_Q6_M00405 TRANSFAC - 2513704 2513719 1.0E-06 AGTTCTATAAATAACC 16 V_MEF2_02_M00231 TRANSFAC - 2513701 2513722 1.0E-06 ACAAGTTCTATAAATAACCACC 22 V_IRF2_Q6_M01882 TRANSFAC + 2513638 2513653 1.0E-06 AAAAAAGAGAAAGTAG 16 V_AP2_Q6_01_M00915 TRANSFAC + 2510274 2510286 6.0E-06 CGTCCCCCAGGCT 13 V_AIRE_02_M01000 TRANSFAC - 2513784 2513808 8.0E-06 GACTTTTATGAGATTGTCTTTCCTT 25 V_PU1_Q4_M01172 TRANSFAC + 2513714 2513732 3.0E-06 AGAACTTGTTTCCTCCTTT 19 V_HOXD13_01_M01404 TRANSFAC + 2513794 2513809 9.0E-06 AATCTCATAAAAGTCA 16 V_HOXA13_03_M01430 TRANSFAC + 2513793 2513808 6.0E-06 CAATCTCATAAAAGTC 16 V_HOXC13_01_M01317 TRANSFAC + 2513793 2513808 2.0E-06 CAATCTCATAAAAGTC 16 V_MEF2A_Q6_M02024 TRANSFAC + 2513707 2513716 1.0E-06 TATTTATAGA 10 V_NRSE_B_M00325 TRANSFAC - 2510244 2510264 1.0E-06 CTCAGCACCTCGGCCAGCGTC 21 V_ELF4_04_M02850 TRANSFAC - 2513702 2513718 3.0E-06 GTTCTATAAATAACCAC 17 V_GC_01_M00255 TRANSFAC + 2509977 2509990 0.0E+00 AGTGGGCGGGGCTT 14 V_FKLF_Q5_M01837 TRANSFAC + 2510193 2510202 2.0E-06 GGGGTGGGAG 10 V_HOXB13_01_M01467 TRANSFAC + 2513794 2513809 5.0E-06 AATCTCATAAAAGTCA 16 V_TATA_01_M00252 TRANSFAC - 2513701 2513715 1.0E-05 CTATAAATAACCACC 15 V_RSRFC4_Q2_M00407 TRANSFAC - 2513702 2513718 1.0E-06 GTTCTATAAATAACCAC 17 V_RSRFC4_Q2_M00407 TRANSFAC + 2513703 2513719 1.0E-06 TGGTTATTTATAGAACT 17 V_AMEF2_Q6_M00403 TRANSFAC - 2513702 2513719 0.0E+00 AGTTCTATAAATAACCAC 18 V_SP1_Q6_M00196 TRANSFAC + 2509977 2509989 2.0E-06 AGTGGGCGGGGCT 13 V_IRF_Q6_M00772 TRANSFAC - 2513640 2513654 1.0E-06 GCTACTTTCTCTTTT 15 V_MEF2_03_M00232 TRANSFAC - 2513701 2513722 0.0E+00 ACAAGTTCTATAAATAACCACC 22 V_NKX52_01_M01315 TRANSFAC - 2513735 2513751 1.0E-06 TCAAGCAATTAGAAAAT 17 V_REST_01_M01256 TRANSFAC + 2510240 2510261 2.0E-06 GCCCGACGCTGGCCGAGGTGCT 22 V_ATF1_Q6_01_M01861 TRANSFAC + 2509644 2509652 4.0E-06 TCACGTCAC 9 V_HMX1_02_M01481 TRANSFAC - 2513735 2513751 4.0E-06 TCAAGCAATTAGAAAAT 17 V_GR_Q6_M00192 TRANSFAC - 2509797 2509815 1.0E-05 GAGGCTCCATCTGTCCTTA 19 V_MEF2_04_M00233 TRANSFAC - 2513701 2513722 1.0E-06 ACAAGTTCTATAAATAACCACC 22 V_GRE_C_M00205 TRANSFAC - 2509798 2509813 2.0E-06 GGCTCCATCTGTCCTT 16 V_RREB1_01_M00257 TRANSFAC + 2509880 2509893 5.0E-06 ACCCAAACCAAAAT 14 V_KLF7_03_M02773 TRANSFAC - 2510092 2510107 8.0E-06 AGAGCCACGCCCCTTC 16 V_XFD2_01_M00268 TRANSFAC - 2513703 2513716 4.0E-06 TCTATAAATAACCA 14 V_MEF2_Q6_01_M00941 TRANSFAC + 2513704 2513715 3.0E-06 GGTTATTTATAG 12 V_ICSBP_Q6_M00699 TRANSFAC + 2513641 2513652 3.0E-06 AAAGAGAAAGTA 12 V_SP4_Q5_M01273 TRANSFAC - 2509978 2509988 9.0E-06 GCCCCGCCCAC 11 V_ATF1_Q6_M00691 TRANSFAC + 2509641 2509651 8.0E-06 CTATCACGTCA 11 V_TBP_01_M00471 TRANSFAC - 2513707 2513714 4.0E-06 TATAAATA 8 V_BARHL1_01_M01332 TRANSFAC - 2513737 2513752 6.0E-06 TTCAAGCAATTAGAAA 16 V_LUN1_01_M00480 TRANSFAC + 2513509 2513525 3.0E-06 TCCCAGCTACTTGGGAG 17 V_ZFP206_01_M01742 TRANSFAC - 2510313 2510323 4.0E-06 TGCGCAGGCGT 11 V_NRSF_01_M00256 TRANSFAC - 2510244 2510264 0.0E+00 CTCAGCACCTCGGCCAGCGTC 21 V_MTATA_B_M00320 TRANSFAC - 2513701 2513717 7.0E-06 TTCTATAAATAACCACC 17 V_REST_02_M02256 TRANSFAC - 2510244 2510264 0.0E+00 CTCAGCACCTCGGCCAGCGTC 21 V_RSRFC4_01_M00026 TRANSFAC + 2513703 2513718 1.0E-06 TGGTTATTTATAGAAC 16 V_RSRFC4_01_M00026 TRANSFAC - 2513703 2513718 3.0E-06 GTTCTATAAATAACCA 16 V_IRF1_Q6_01_M01881 TRANSFAC - 2513639 2513652 0.0E+00 TACTTTCTCTTTTT 14 V_HFH3_01_M00289 TRANSFAC + 2513704 2513716 6.0E-06 GGTTATTTATAGA 13 V_VDR_Q3_M00444 TRANSFAC - 2509869 2509883 5.0E-06 GGGTAACTGGGTAGA 15 V_BSX_01_M01442 TRANSFAC - 2513735 2513750 8.0E-06 CAAGCAATTAGAAAAT 16 V_BARHL2_01_M01446 TRANSFAC - 2513737 2513752 4.0E-06 TTCAAGCAATTAGAAA 16 V_MEF2_01_M00006 TRANSFAC - 2513702 2513717 1.0E-06 TTCTATAAATAACCAC 16 V_MEF2A_05_M01301 TRANSFAC + 2513704 2513715 1.0E-06 GGTTATTTATAG 12 V_HMEF2_Q6_M00406 TRANSFAC - 2513702 2513717 0.0E+00 TTCTATAAATAACCAC 16 V_HMX3_02_M01413 TRANSFAC - 2513735 2513751 0.0E+00 TCAAGCAATTAGAAAAT 17 V_SP1_Q4_01_M00932 TRANSFAC + 2509977 2509989 1.0E-06 AGTGGGCGGGGCT 13 V_BARX1_01_M01340 TRANSFAC - 2513735 2513750 4.0E-06 CAAGCAATTAGAAAAT 16 V_HOXD10_01_M01375 TRANSFAC + 2513794 2513810 7.0E-06 AATCTCATAAAAGTCAT 17 V_SOX9_Q4_M01284 TRANSFAC - 2513726 2513736 6.0E-06 ATACAAAGGAG 11 V_NANOG_02_M01247 TRANSFAC - 2513723 2513742 2.0E-06 TAGAAAATACAAAGGAGGAA 20 V_IPF1_06_M01438 TRANSFAC - 2513735 2513750 8.0E-06 CAAGCAATTAGAAAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.