Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C3orf36 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 80111 chromosome 3 open reading frame 36 chr3 - 133648156 - 133653656 133648656 Transcription Factor Binding Sites   Download all TFBS in the C3orf36 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 133646568 133646586 0.0E+00 CCGCCACCAGGGGGCGCCG 19 CTCF_MA0139.1 JASPAR + 133649375 133649393 5.0E-06 CAGTCACCAGATGGAGCTG 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 133646249 133646261 1.0E-06 GAAAACATAAATA 13 Barhl1_homeodomain_DBD_monomeric_10_1 SELEX + 133646263 133646272 2.0E-06 ACTAAACGGT 10 Klf4_MA0039.2 JASPAR + 133646520 133646529 1.0E-05 TGGGCGTGGC 10 BARHL2_homeodomain_full_monomeric_10_1 SELEX + 133646263 133646272 5.0E-06 ACTAAACGGT 10 CTCF_C2H2_full_monomeric_17_1 SELEX + 133646569 133646585 1.0E-06 GGCGCCCCCTGGTGGCG 17 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 133646249 133646261 0.0E+00 GAAAACATAAATA 13 V_MTF1_01_M01242 TRANSFAC - 133646599 133646618 0.0E+00 GTGGGCGGCCCCTTGCGCCC 20 V_STAT5A_Q6_M01890 TRANSFAC + 133646651 133646663 1.0E-06 CCTTTTCTGAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 133646655 133646667 5.0E-06 GGCTTTCTCAGAA 13 V_FREAC7_01_M00293 TRANSFAC + 133646250 133646265 2.0E-06 AAAACATAAATAGACT 16 V_ZFX_01_M01593 TRANSFAC + 133646547 133646562 2.0E-06 CCCCGGGCCGCGGCGG 16 V_SPIB_02_M02041 TRANSFAC + 133646293 133646302 8.0E-06 AGAGGAAGTT 10 V_STAT_Q6_M00777 TRANSFAC + 133646650 133646662 5.0E-06 GCCTTTTCTGAGA 13 V_MEF2_02_M00231 TRANSFAC + 133646246 133646267 7.0E-06 GCAGAAAACATAAATAGACTAA 22 V_ISL2_01_M01328 TRANSFAC - 133649513 133649528 8.0E-06 AACTATTCATTAAACA 16 V_GKLF_02_M01588 TRANSFAC - 133646518 133646529 1.0E-06 GCCACGCCCAGC 12 V_TAL1_Q6_M00993 TRANSFAC - 133649380 133649389 7.0E-06 TCCATCTGGT 10 V_POU3F2_01_M00463 TRANSFAC + 133649325 133649338 8.0E-06 TTGAATAAAATCAC 14 V_SPI1_03_M02078 TRANSFAC + 133646293 133646302 2.0E-06 AGAGGAAGTT 10 V_FKLF_Q5_M01837 TRANSFAC - 133646612 133646621 5.0E-06 GGGGTGGGCG 10 V_HNF1_Q6_M00790 TRANSFAC + 133649513 133649530 3.0E-06 TGTTTAATGAATAGTTGT 18 V_HNF1_Q6_01_M01011 TRANSFAC - 133649511 133649531 6.0E-06 CACAACTATTCATTAAACAGG 21 V_STAT4_Q5_M02117 TRANSFAC - 133646654 133646663 9.0E-06 TTCTCAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC + 133646655 133646664 5.0E-06 TTCTGAGAAA 10 V_SP1_01_M00008 TRANSFAC - 133646617 133646626 7.0E-06 GAGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC - 133646570 133646589 0.0E+00 ATTCCGCCACCAGGGGGCGC 20 V_CTCF_02_M01259 TRANSFAC + 133649372 133649391 2.0E-06 AAGCAGTCACCAGATGGAGC 20 V_CTCF_01_M01200 TRANSFAC - 133646568 133646587 0.0E+00 TCCGCCACCAGGGGGCGCCG 20 V_CTCF_01_M01200 TRANSFAC + 133649374 133649393 5.0E-06 GCAGTCACCAGATGGAGCTG 20 V_ISGF4G_04_M02875 TRANSFAC + 133646248 133646261 4.0E-06 AGAAAACATAAATA 14 V_AIRE_01_M00999 TRANSFAC + 133649480 133649505 9.0E-06 TTAACTCATGGTGCTATAGGGATAAA 26 V_OTX2_01_M01387 TRANSFAC + 133649494 133649510 9.0E-06 TATAGGGATAAATTGGC 17 V_SPIC_02_M02077 TRANSFAC + 133646293 133646302 1.0E-06 AGAGGAAGTT 10 V_STAT1STAT1_Q3_M01212 TRANSFAC - 133646653 133646665 2.0E-06 CTTTCTCAGAAAA 13 V_OCT1_06_M00162 TRANSFAC - 133649331 133649344 3.0E-06 CATATTGTGATTTT 14 V_SOX1_03_M02802 TRANSFAC - 133649514 133649529 4.0E-06 CAACTATTCATTAAAC 16 V_STAT1_05_M01260 TRANSFAC + 133646652 133646673 6.0E-06 CTTTTCTGAGAAAGCCAGAGGA 22 V_SPI1_02_M02043 TRANSFAC + 133646293 133646302 6.0E-06 AGAGGAAGTT 10 V_SPIB_03_M02076 TRANSFAC + 133646293 133646302 2.0E-06 AGAGGAAGTT 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.