Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CNTNAP3B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79937 contactin associated protein-like 3 chr9 - 39287800 - 39293300 39288300 Transcription Factor Binding Sites   Download all TFBS in the CNTNAP3B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 39286537 39286549 8.0E-06 ACAAACATATAAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 39286541 39286552 5.0E-06 TAAACAAACATA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX - 39286542 39286554 1.0E-06 CTTAAACAAACAT 13 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 39285856 39285868 4.0E-06 CATCAACAGGTTG 13 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 39286543 39286553 2.0E-06 TTAAACAAACA 11 FOXI1_MA0042.1 JASPAR + 39286540 39286551 1.0E-06 ATATGTTTGTTT 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 39286543 39286553 1.0E-06 TTAAACAAACA 11 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 39285856 39285870 3.0E-06 CATCAACAGGTTGCC 15 Foxd3_MA0041.1 JASPAR + 39286540 39286551 0.0E+00 ATATGTTTGTTT 12 Hltf_MA0109.1 JASPAR - 39286538 39286547 1.0E-05 AAACATATAA 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 39286543 39286555 6.0E-06 GCTTAAACAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 39286537 39286549 8.0E-06 ACAAACATATAAA 13 V_RUSH1A_02_M01107 TRANSFAC - 39286538 39286547 1.0E-05 AAACATATAA 10 V_FOXP1_01_M00987 TRANSFAC + 39286534 39286553 1.0E-06 TCATTTATATGTTTGTTTAA 20 V_HNF3B_01_M00131 TRANSFAC + 39286538 39286552 0.0E+00 TTATATGTTTGTTTA 15 V_FOXD3_01_M00130 TRANSFAC + 39286540 39286551 1.0E-06 ATATGTTTGTTT 12 V_HNF3_Q6_01_M01012 TRANSFAC + 39286538 39286555 0.0E+00 TTATATGTTTGTTTAAGC 18 V_HFH4_01_M00742 TRANSFAC + 39286540 39286552 0.0E+00 ATATGTTTGTTTA 13 V_AIRE_02_M01000 TRANSFAC + 39285853 39285877 6.0E-06 CATCATCAACAGGTTGCCTTCGTGG 25 V_CDX_Q5_M00991 TRANSFAC - 39286533 39286550 9.0E-06 AACAAACATATAAATGAG 18 V_HNF3G_Q4_M02015 TRANSFAC + 39286543 39286550 7.0E-06 TGTTTGTT 8 V_IRX4_01_M01410 TRANSFAC - 39286534 39286550 3.0E-06 AACAAACATATAAATGA 17 V_HNF3_Q6_M00791 TRANSFAC - 39286541 39286553 0.0E+00 TTAAACAAACATA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 39286543 39286553 1.0E-06 TGTTTGTTTAA 11 V_HFH8_01_M00294 TRANSFAC + 39286540 39286552 3.0E-06 ATATGTTTGTTTA 13 V_HFH3_01_M00289 TRANSFAC + 39286540 39286552 0.0E+00 ATATGTTTGTTTA 13 V_FOXJ2_01_M00422 TRANSFAC - 39286538 39286555 1.0E-06 GCTTAAACAAACATATAA 18 V_FOXO1_04_M01969 TRANSFAC + 39285851 39285870 2.0E-06 GCCATCATCAACAGGTTGCC 20 V_P300_01_M00033 TRANSFAC - 39288124 39288137 7.0E-06 GACGGGAGTGAGAG 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.