Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RPAP2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79871 RNA polymerase II associated protein 2 chr1 + 92759521 - 92765021 92764521 Transcription Factor Binding Sites   Download all TFBS in the RPAP2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 92763880 92763892 2.0E-06 AAAAACAAAAAAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 92763877 92763888 5.0E-06 AAAAAAAACAAA 12 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 92765480 92765496 4.0E-06 ATGGTCACACAAGGATG 17 Pax4_MA0068.1 JASPAR + 92763875 92763904 4.0E-06 GAAAAAAAAACAAAAAAAACCTCTCGAGCA 30 Pax4_MA0068.1 JASPAR + 92763876 92763905 2.0E-06 AAAAAAAAACAAAAAAAACCTCTCGAGCAC 30 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 92763880 92763893 5.0E-06 AAAAACAAAAAAAA 14 Gfi_MA0038.1 JASPAR + 92764157 92764166 7.0E-06 GAAATCACTG 10 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 92764112 92764128 7.0E-06 TTCTCTCTAGGAGTTGC 17 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 92763880 92763890 8.0E-06 AAAAACAAAAA 11 Foxd3_MA0041.1 JASPAR - 92763878 92763889 1.0E-06 TTTTGTTTTTTT 12 Evi1_MA0029.1 JASPAR + 92764176 92764189 3.0E-06 GAGACAAGACAACG 14 FEV_MA0156.1 JASPAR - 92764871 92764878 1.0E-05 CAGGAAAT 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 92763878 92763890 0.0E+00 AAAAAAACAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 92763874 92763886 4.0E-06 GGAAAAAAAAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 92763880 92763892 0.0E+00 AAAAACAAAAAAA 13 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 92763880 92763893 1.0E-06 AAAAACAAAAAAAA 14 V_FOXP1_01_M00987 TRANSFAC - 92763872 92763891 2.0E-06 TTTTTTGTTTTTTTTTCCTT 20 V_FOXP1_01_M00987 TRANSFAC - 92763874 92763893 1.0E-06 TTTTTTTTGTTTTTTTTTCC 20 V_FOXP1_01_M00987 TRANSFAC - 92763877 92763896 1.0E-06 AGGTTTTTTTTGTTTTTTTT 20 V_HNF3B_01_M00131 TRANSFAC - 92763877 92763891 5.0E-06 TTTTTTGTTTTTTTT 15 V_TCF3_01_M01594 TRANSFAC - 92763878 92763890 0.0E+00 TTTTTGTTTTTTT 13 V_PAX4_03_M00378 TRANSFAC - 92764081 92764092 1.0E-06 AATCTTCACCCC 12 V_EVI1_04_M00081 TRANSFAC + 92763877 92763891 8.0E-06 AAAAAAAACAAAAAA 15 V_FOXD3_01_M00130 TRANSFAC - 92763878 92763889 1.0E-06 TTTTGTTTTTTT 12 V_BCL6_01_M01183 TRANSFAC - 92763876 92763891 0.0E+00 TTTTTTGTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 92763877 92763892 1.0E-06 TTTTTTTGTTTTTTTT 16 V_LRH1_Q5_01_M02098 TRANSFAC - 92765030 92765040 1.0E-06 GTTCAAGGCCA 11 V_ETS_B_M00340 TRANSFAC - 92764867 92764880 5.0E-06 GCCAGGAAATCTTT 14 V_FOXO4_02_M00476 TRANSFAC - 92763877 92763890 8.0E-06 TTTTTGTTTTTTTT 14 V_SATB1_Q3_M01723 TRANSFAC - 92765711 92765726 9.0E-06 CTACATAATGACATTT 16 V_SP1_Q6_01_M00931 TRANSFAC - 92764546 92764555 4.0E-06 GGGGCGGGGC 10 V_SRY_02_M00160 TRANSFAC + 92763880 92763891 2.0E-06 AAAAACAAAAAA 12 V_NFAT3_Q3_M01734 TRANSFAC - 92763873 92763882 6.0E-06 TTTTTTTCCT 10 V_EVI1_02_M00079 TRANSFAC + 92764177 92764187 1.0E-06 AGACAAGACAA 11 V_FOXO3A_Q1_M01137 TRANSFAC + 92763879 92763890 4.0E-06 AAAAAACAAAAA 12 V_HNF3_Q6_01_M01012 TRANSFAC - 92763874 92763891 2.0E-06 TTTTTTGTTTTTTTTTCC 18 V_FOXJ1_03_M02750 TRANSFAC + 92763877 92763892 3.0E-06 AAAAAAAACAAAAAAA 16 V_TCFAP2E_04_M02926 TRANSFAC + 92763870 92763883 1.0E-06 TGAAGGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 92763871 92763884 4.0E-06 GAAGGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 92763880 92763893 5.0E-06 AAAAACAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 92763881 92763894 8.0E-06 AAAACAAAAAAAAC 14 V_RPC155_01_M01798 TRANSFAC - 92765031 92765046 3.0E-06 TCCTAGGTTCAAGGCC 16 V_SOX7_03_M02807 TRANSFAC + 92763876 92763897 6.0E-06 AAAAAAAAACAAAAAAAACCTC 22 V_HELIOSA_02_M01004 TRANSFAC + 92763870 92763880 6.0E-06 TGAAGGAAAAA 11 V_FOXA2_02_M02853 TRANSFAC + 92763877 92763891 1.0E-06 AAAAAAAACAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 92763876 92763890 0.0E+00 AAAAAAAAACAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 92763879 92763893 0.0E+00 AAAAAACAAAAAAAA 15 V_OCT1_03_M00137 TRANSFAC - 92765713 92765725 8.0E-06 TACATAATGACAT 13 V_GFI1_01_M00250 TRANSFAC + 92764151 92764174 4.0E-06 GCTAGTGAAATCACTGTATCACAC 24 V_TEF_Q6_M00672 TRANSFAC - 92765485 92765496 7.0E-06 ATGGTCACACAA 12 V_SP1_Q6_M00196 TRANSFAC - 92764545 92764557 4.0E-06 GCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC + 92764568 92764580 8.0E-06 GGGAGGCGGGGCC 13 V_IRF3_Q3_M01279 TRANSFAC - 92763871 92763883 6.0E-06 TTTTTTTTCCTTC 13 V_HNF3_Q6_M00791 TRANSFAC + 92763876 92763888 4.0E-06 AAAAAAAAACAAA 13 V_HNF3_Q6_M00791 TRANSFAC + 92763880 92763892 4.0E-06 AAAAACAAAAAAA 13 V_ZIC3_05_M02941 TRANSFAC + 92765585 92765599 3.0E-06 CTGCACAGCATGTTA 15 V_SOX11_03_M02795 TRANSFAC + 92763878 92763894 1.0E-06 AAAAAAACAAAAAAAAC 17 V_FOXO1_Q5_M01216 TRANSFAC + 92763880 92763888 1.0E-06 AAAAACAAA 9 V_SP4_Q5_M01273 TRANSFAC + 92764546 92764556 2.0E-06 GCCCCGCCCCG 11 V_LRH1_Q5_M01142 TRANSFAC + 92765029 92765040 0.0E+00 CTGGCCTTGAAC 12 V_GFI1_Q6_M01067 TRANSFAC + 92764156 92764168 8.0E-06 TGAAATCACTGTA 13 V_ZIC2_05_M02940 TRANSFAC + 92765585 92765599 6.0E-06 CTGCACAGCATGTTA 15 V_MTF1_06_M02882 TRANSFAC + 92763879 92763892 2.0E-06 AAAAAACAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 92763880 92763893 7.0E-06 AAAAACAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 92763875 92763888 4.0E-06 GAAAAAAAAACAAA 14 V_FAC1_01_M00456 TRANSFAC + 92763877 92763890 0.0E+00 AAAAAAAACAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 92763880 92763893 3.0E-06 AAAAACAAAAAAAA 14 V_FOXL1_02_M02857 TRANSFAC + 92763876 92763891 1.0E-06 AAAAAAAAACAAAAAA 16 V_FOXL1_04_M02753 TRANSFAC + 92763875 92763891 5.0E-06 GAAAAAAAAACAAAAAA 17 V_NCX_01_M00484 TRANSFAC - 92764474 92764483 4.0E-06 CGGTAAGTGG 10 V_FOXO3_01_M00477 TRANSFAC - 92763877 92763890 3.0E-06 TTTTTGTTTTTTTT 14 V_STAT6_02_M00500 TRANSFAC + 92764870 92764877 1.0E-05 GATTTCCT 8 V_OCT1_06_M00162 TRANSFAC - 92765710 92765723 2.0E-06 CATAATGACATTTC 14 V_R_01_M00273 TRANSFAC - 92764377 92764397 1.0E-05 TAGGCCACGCGAGGTGGTGGA 21 V_R_01_M00273 TRANSFAC - 92764417 92764437 7.0E-06 TTGGCCGTGAGCCGCGGCGGA 21 V_SOX8_03_M02808 TRANSFAC - 92763878 92763894 6.0E-06 GTTTTTTTTGTTTTTTT 17 V_SRF_06_M02916 TRANSFAC + 92763871 92763887 1.0E-06 GAAGGAAAAAAAAACAA 17 V_SRF_06_M02916 TRANSFAC + 92763872 92763888 3.0E-06 AAGGAAAAAAAAACAAA 17 V_SRF_06_M02916 TRANSFAC + 92763873 92763889 2.0E-06 AGGAAAAAAAAACAAAA 17 V_SRF_06_M02916 TRANSFAC + 92763874 92763890 0.0E+00 GGAAAAAAAAACAAAAA 17 V_SRF_06_M02916 TRANSFAC + 92763875 92763891 1.0E-06 GAAAAAAAAACAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 92763876 92763892 5.0E-06 AAAAAAAAACAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 92763877 92763893 5.0E-06 AAAAAAAACAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 92763878 92763894 4.0E-06 AAAAAAACAAAAAAAAC 17 V_SRF_06_M02916 TRANSFAC + 92763881 92763897 9.0E-06 AAAACAAAAAAAACCTC 17 V_SRF_06_M02916 TRANSFAC + 92763882 92763898 7.0E-06 AAACAAAAAAAACCTCT 17 V_FOXO1_01_M00473 TRANSFAC + 92763879 92763888 2.0E-06 AAAAAACAAA 10 V_SOX2_Q6_M01272 TRANSFAC - 92763879 92763894 7.0E-06 GTTTTTTTTGTTTTTT 16 V_SOX12_03_M02796 TRANSFAC - 92763877 92763890 7.0E-06 TTTTTGTTTTTTTT 14 V_ARP1_01_M00155 TRANSFAC - 92766824 92766839 8.0E-06 CGAGCTCCTGGCCTCA 16 V_SP1_Q4_01_M00932 TRANSFAC - 92764545 92764557 6.0E-06 GCGGGGCGGGGCC 13 V_GFI1_Q6_01_M02010 TRANSFAC - 92764157 92764166 5.0E-06 CAGTGATTTC 10 V_LTF_Q6_M01692 TRANSFAC - 92765003 92765011 1.0E-05 GTCACTTGC 9 V_TCF3_05_M02920 TRANSFAC + 92763871 92763885 1.0E-05 GAAGGAAAAAAAAAC 15 V_TCF3_05_M02920 TRANSFAC + 92763872 92763886 5.0E-06 AAGGAAAAAAAAACA 15 V_FEV_01_M02269 TRANSFAC - 92764871 92764878 1.0E-05 CAGGAAAT 8 V_FOXK1_03_M02752 TRANSFAC + 92763875 92763891 8.0E-06 GAAAAAAAAACAAAAAA 17 V_PAX4_04_M00380 TRANSFAC + 92763876 92763905 0.0E+00 AAAAAAAAACAAAAAAAACCTCTCGAGCAC 30 V_PAX4_04_M00380 TRANSFAC + 92765456 92765485 1.0E-05 GAGAAATAAGTTGTTAGTCGATTTCATCCT 30 V_SMAD1_01_M01590 TRANSFAC + 92763880 92763891 0.0E+00 AAAAACAAAAAA 12 V_ZIC1_05_M02939 TRANSFAC + 92765585 92765599 8.0E-06 CTGCACAGCATGTTA 15 V_NANOG_02_M01247 TRANSFAC + 92763868 92763887 6.0E-06 TTTGAAGGAAAAAAAAACAA 20 V_NANOG_02_M01247 TRANSFAC + 92763876 92763895 0.0E+00 AAAAAAAAACAAAAAAAACC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.