Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ARHGEF5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7984 Rho guanine nucleotide exchange factor (GEF) 5 chr7 + 144047488 - 144052988 144052488 Transcription Factor Binding Sites   Download all TFBS in the ARHGEF5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 144051262 144051274 4.0E-06 ATAAAAAAAAAAA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 144051262 144051278 8.0E-06 ATAAAAAAAAAAATACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 144054791 144054802 4.0E-06 ACTAGAAATAGA 12 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 144050449 144050461 0.0E+00 CAGAGGTCAACAG 13 MEF2A_MADS_DBD_dimeric_12_1 SELEX + 144054791 144054802 8.0E-06 ACTAGAAATAGA 12 POU4F3_POU_DBD_monomeric_16_1 SELEX - 144051000 144051015 4.0E-06 GTGAAATATTAATGGA 16 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 144051003 144051015 7.0E-06 GTGAAATATTAAT 13 CPEB1_RRM_full_monomeric_8_1 SELEX + 144051261 144051268 4.0E-06 AATAAAAA 8 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 144051264 144051276 8.0E-06 AAAAAAAAAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 144051262 144051274 2.0E-06 ATAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 144051264 144051276 4.0E-06 AAAAAAAAAAATA 13 POU4F1_POU_DBD_monomeric_14_1 SELEX - 144051002 144051015 3.0E-06 GTGAAATATTAATG 14 V_FOXP1_01_M00987 TRANSFAC - 144051258 144051277 1.0E-06 GTATTTTTTTTTTTATTCTT 20 V_FOXP1_01_M00987 TRANSFAC - 144051264 144051283 1.0E-06 ATGCCTGTATTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 144051266 144051285 5.0E-06 TTATGCCTGTATTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 144051282 144051301 0.0E+00 ATGTTTGTGTGTTTTCTTAT 20 V_DBX1_01_M01483 TRANSFAC + 144051260 144051276 1.0E-05 GAATAAAAAAAAAAATA 17 V_AR_02_M00953 TRANSFAC - 144051232 144051258 1.0E-06 TTCAGGGAAACGTTGTGTTCTGTTAGT 27 V_HMGIY_Q3_M01010 TRANSFAC - 144051266 144051280 2.0E-06 CCTGTATTTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 144051255 144051269 5.0E-06 TGAAAGAATAAAAAA 15 V_EVI1_04_M00081 TRANSFAC + 144051260 144051274 1.0E-06 GAATAAAAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC - 144051257 144051272 0.0E+00 TTTTTTTTTATTCTTT 16 V_NR2F2_03_M02783 TRANSFAC + 144050446 144050461 7.0E-06 ACCCAGAGGTCAACAG 16 V_HNF3_Q6_01_M01012 TRANSFAC - 144051256 144051273 3.0E-06 TTTTTTTTTTATTCTTTC 18 V_HNF3_Q6_01_M01012 TRANSFAC - 144051280 144051297 8.0E-06 TTGTGTGTTTTCTTATGC 18 V_PITX2_Q6_M02114 TRANSFAC - 144050416 144050425 1.0E-06 TGTAATCCCA 10 V_TCFAP2E_04_M02926 TRANSFAC + 144051259 144051272 2.0E-06 AGAATAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 144051260 144051273 2.0E-06 GAATAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 144051261 144051274 2.0E-06 AATAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 144051262 144051275 1.0E-05 ATAAAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC + 144051263 144051276 0.0E+00 TAAAAAAAAAAATA 14 V_CDX_Q5_M00991 TRANSFAC + 144051261 144051278 1.0E-06 AATAAAAAAAAAAATACA 18 V_LDSPOLYA_B_M00317 TRANSFAC - 144051281 144051296 7.0E-06 TGTGTGTTTTCTTATG 16 V_AR_03_M00956 TRANSFAC - 144051232 144051258 1.0E-06 TTCAGGGAAACGTTGTGTTCTGTTAGT 27 V_ELF4_04_M02850 TRANSFAC + 144051259 144051275 8.0E-06 AGAATAAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 144051260 144051276 2.0E-06 GAATAAAAAAAAAAATA 17 V_ELF4_04_M02850 TRANSFAC + 144051261 144051277 0.0E+00 AATAAAAAAAAAAATAC 17 V_FOXA2_02_M02853 TRANSFAC + 144051258 144051272 8.0E-06 AAGAATAAAAAAAAA 15 V_PR_01_M00954 TRANSFAC - 144051232 144051258 1.0E-06 TTCAGGGAAACGTTGTGTTCTGTTAGT 27 V_ZFP105_03_M02827 TRANSFAC + 144051257 144051271 8.0E-06 AAAGAATAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 144051258 144051272 5.0E-06 AAGAATAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 144051261 144051275 0.0E+00 AATAAAAAAAAAAAT 15 V_ZFP105_03_M02827 TRANSFAC + 144051262 144051276 1.0E-06 ATAAAAAAAAAAATA 15 V_ZFP105_03_M02827 TRANSFAC + 144051263 144051277 1.0E-06 TAAAAAAAAAAATAC 15 V_ZFP105_03_M02827 TRANSFAC + 144051264 144051278 6.0E-06 AAAAAAAAAAATACA 15 V_AP1_Q4_M00188 TRANSFAC - 144050428 144050438 1.0E-05 GGTGACTCACA 11 V_NKX25_Q5_M01043 TRANSFAC + 144051010 144051019 7.0E-06 TTTCACTTGA 10 V_JUNDM2_04_M02876 TRANSFAC + 144050425 144050440 3.0E-06 AGTTGTGAGTCACCGC 16 V_JUNDM2_04_M02876 TRANSFAC - 144050426 144050441 9.0E-06 TGCGGTGACTCACAAC 16 V_GR_01_M00955 TRANSFAC - 144051232 144051258 7.0E-06 TTCAGGGAAACGTTGTGTTCTGTTAGT 27 V_GR_Q6_M00192 TRANSFAC - 144051236 144051254 5.0E-06 GGGAAACGTTGTGTTCTGT 19 V_MEF2_04_M00233 TRANSFAC + 144054785 144054806 1.0E-06 CTAGTGACTAGAAATAGACAAG 22 V_GATA4_Q3_M00632 TRANSFAC + 144049971 144049982 7.0E-06 AGAAAAGAGAGA 12 V_MTF1_06_M02882 TRANSFAC + 144051257 144051270 1.0E-06 AAAGAATAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 144051260 144051273 0.0E+00 GAATAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 144051261 144051274 3.0E-06 AATAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 144051263 144051276 8.0E-06 TAAAAAAAAAAATA 14 V_PARP_Q3_M01211 TRANSFAC + 144054792 144054801 8.0E-06 CTAGAAATAG 10 V_PITX2_Q2_M00482 TRANSFAC - 144050415 144050425 1.0E-06 TGTAATCCCAG 11 V_RARA_03_M02787 TRANSFAC + 144050446 144050461 8.0E-06 ACCCAGAGGTCAACAG 16 V_SRF_06_M02916 TRANSFAC + 144051256 144051272 6.0E-06 GAAAGAATAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 144051258 144051274 6.0E-06 AAGAATAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 144051259 144051275 1.0E-06 AGAATAAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 144051260 144051276 0.0E+00 GAATAAAAAAAAAAATA 17 V_SRF_06_M02916 TRANSFAC + 144051261 144051277 0.0E+00 AATAAAAAAAAAAATAC 17 V_SRF_06_M02916 TRANSFAC + 144051262 144051278 1.0E-06 ATAAAAAAAAAAATACA 17 V_PR_02_M00957 TRANSFAC - 144051232 144051258 1.0E-06 TTCAGGGAAACGTTGTGTTCTGTTAGT 27 V_TCF3_05_M02920 TRANSFAC + 144051259 144051273 5.0E-06 AGAATAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 144051261 144051275 7.0E-06 AATAAAAAAAAAAAT 15 V_COUP_DR1_Q6_M00765 TRANSFAC - 144050445 144050457 9.0E-06 TGACCTCTGGGTC 13 V_STAT1_Q6_M01823 TRANSFAC - 144051249 144051258 8.0E-06 TTCAGGGAAA 10 V_NANOG_02_M01247 TRANSFAC + 144051257 144051276 6.0E-06 AAAGAATAAAAAAAAAAATA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.