Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TMC5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79838 transmembrane channel-like 5 chr16 + 19417056 - 19422556 19422056 Transcription Factor Binding Sites   Download all TFBS in the TMC5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HES5_bHLH_DBD_dimeric_12_1 SELEX - 19418634 19418645 7.0E-06 AGCCACGTGCCA 12 POU2F1_POU_DBD_dimeric_14_1 SELEX - 19431317 19431330 6.0E-06 TATAAATATTCCTT 14 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 19418452 19418462 4.0E-06 TTTAAAGGTTA 11 SRY_HMG_DBD_dimeric_13_2 SELEX - 19431267 19431279 4.0E-06 TGATTAGCATTCT 13 POU3F2_POU_DBD_monomeric_13_1 SELEX + 19422367 19422379 8.0E-06 TTTGCATTAAGAA 13 EWSR1-FLI1_MA0149.1 JASPAR + 19421878 19421895 3.0E-06 GGAAAGAAAGAATGAATG 18 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 19418421 19418432 3.0E-06 AAAACGATTTCT 12 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 19431273 19431286 8.0E-06 CTAATCATCAGTTA 14 HES7_bHLH_DBD_dimeric_12_1 SELEX - 19418634 19418645 6.0E-06 AGCCACGTGCCA 12 MEF2A_MA0052.1 JASPAR + 19431322 19431331 5.0E-06 ATATTTATAG 10 SOX2_HMG_full_dimeric_15_1 SELEX - 19431266 19431280 6.0E-06 ATGATTAGCATTCTA 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 19431133 19431147 4.0E-06 ACTTAATGAATAACG 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 19431133 19431147 9.0E-06 CGTTATTCATTAAGT 15 XBP1_bZIP_DBD_dimeric_14_1 SELEX - 19431178 19431191 3.0E-06 CCTGCCACGTCATC 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 19431317 19431330 4.0E-06 AAGGAATATTTATA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 19431317 19431330 8.0E-06 TATAAATATTCCTT 14 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 19418447 19418462 2.0E-06 AAAACTTTAAAGGTTA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 19418447 19418462 2.0E-06 TAACCTTTAAAGTTTT 16 Creb3l2_bZIP_DBD_dimeric_13_1 SELEX - 19431177 19431189 0.0E+00 TGCCACGTCATCC 13 Gfi_MA0038.1 JASPAR + 19431252 19431261 2.0E-06 TAAATCACAG 10 PRDM4_C2H2_full_monomeric_13_1 SELEX + 19431218 19431230 5.0E-06 TTTCTAGTCACCC 13 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 19431274 19431286 9.0E-06 TAACTGATGATTA 13 CREB3L1_bZIP_full_dimeric_14_1 SELEX - 19431177 19431190 0.0E+00 CTGCCACGTCATCC 14 Myf_MA0055.1 JASPAR + 19422075 19422086 1.0E-05 CGGCAACAGGAG 12 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 19431133 19431147 4.0E-06 ACTTAATGAATAACG 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 19431266 19431280 9.0E-06 ATGATTAGCATTCTA 15 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 19431195 19431208 7.0E-06 TGACGCTATTATTG 14 V_STAT5A_Q6_M01890 TRANSFAC - 19421965 19421977 9.0E-06 TTTCTTCTGAGAA 13 V_FREAC7_01_M00293 TRANSFAC + 19431122 19431137 9.0E-06 TCTTCATAAACACTTA 16 V_MAX_Q6_M01830 TRANSFAC - 19418636 19418647 0.0E+00 CCAGCCACGTGC 12 V_EVI1_04_M00081 TRANSFAC + 19418436 19418450 6.0E-06 AGAAAGAAAAAAAAA 15 V_BCL6_01_M01183 TRANSFAC - 19418434 19418449 5.0E-06 TTTTTTTTCTTTCTTT 16 V_BCL6_01_M01183 TRANSFAC - 19418442 19418457 3.0E-06 TTTAAAGTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 19418443 19418458 3.0E-06 CTTTAAAGTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 19418447 19418462 9.0E-06 TAACCTTTAAAGTTTT 16 V_OCT1_Q5_01_M00930 TRANSFAC - 19431269 19431279 7.0E-06 TGATTAGCATT 11 V_HOXA4_01_M01370 TRANSFAC - 19431131 19431147 5.0E-06 CGTTATTCATTAAGTGT 17 V_POU2F3_01_M01476 TRANSFAC + 19431266 19431281 4.0E-06 TAGAATGCTAATCATC 16 V_AP2_Q6_01_M00915 TRANSFAC - 19422024 19422036 6.0E-06 CAGCCCGCAGGCG 13 V_AP2_Q6_M00189 TRANSFAC - 19422024 19422035 1.0E-06 AGCCCGCAGGCG 12 V_OCT_C_M00210 TRANSFAC - 19431268 19431280 5.0E-06 ATGATTAGCATTC 13 V_TCFAP2E_04_M02926 TRANSFAC + 19418432 19418445 7.0E-06 TAAAAGAAAGAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 19418436 19418449 2.0E-06 AGAAAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 19418437 19418450 3.0E-06 GAAAGAAAAAAAAA 14 V_STAT4_Q4_M01666 TRANSFAC + 19421965 19421978 6.0E-06 TTCTCAGAAGAAAG 14 V_MYF_01_M01302 TRANSFAC + 19422075 19422086 1.0E-05 CGGCAACAGGAG 12 V_GFI1_01_M00250 TRANSFAC + 19431246 19431269 1.0E-06 CAGAGATAAATCACAGCAGCTAGA 24 V_NKX31_02_M02782 TRANSFAC + 19431126 19431142 4.0E-06 CATAAACACTTAATGAA 17 V_POLY_C_M00212 TRANSFAC + 19418593 19418610 3.0E-06 AATTAAACTCCTTGGCTA 18 V_CEBPD_Q6_M00621 TRANSFAC - 19431141 19431152 4.0E-06 CATTGCGTTATT 12 V_CEBPB_02_M00117 TRANSFAC + 19424796 19424809 9.0E-06 AGATTGCGCCACTG 14 V_OCT1_05_M00161 TRANSFAC - 19431267 19431280 1.0E-06 ATGATTAGCATTCT 14 V_NKX52_01_M01315 TRANSFAC + 19431127 19431143 0.0E+00 ATAAACACTTAATGAAT 17 V_HBP1_03_M02762 TRANSFAC + 19421882 19421897 8.0E-06 AGAAAGAATGAATGCA 16 V_HMX1_02_M01481 TRANSFAC + 19431127 19431143 1.0E-06 ATAAACACTTAATGAAT 17 V_ZBRK1_01_M01105 TRANSFAC + 19424771 19424785 7.0E-06 GGGAGGCAGAGATTG 15 V_PNR_01_M01650 TRANSFAC + 19418449 19418462 8.0E-06 AACTTTAAAGGTTA 14 V_NCX_02_M01420 TRANSFAC + 19431128 19431144 5.0E-06 TAAACACTTAATGAATA 17 V_NKX32_02_M01482 TRANSFAC + 19431126 19431142 1.0E-06 CATAAACACTTAATGAA 17 V_NEUROD_02_M01288 TRANSFAC - 19421944 19421955 7.0E-06 TTCCTGCTGGGT 12 V_GCNF_01_M00526 TRANSFAC + 19431094 19431111 1.0E-06 GACAGGGTCAAGTTCAAG 18 V_HFH8_01_M00294 TRANSFAC - 19431124 19431136 9.0E-06 AAGTGTTTATGAA 13 V_GFI1_Q6_M01067 TRANSFAC + 19431251 19431263 2.0E-06 ATAAATCACAGCA 13 V_ZIC2_05_M02940 TRANSFAC + 19421942 19421956 9.0E-06 CAACCCAGCAGGAAC 15 V_MTF1_06_M02882 TRANSFAC + 19418435 19418448 7.0E-06 AAGAAAGAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 19418438 19418451 1.0E-06 AAAGAAAAAAAAAC 14 V_TBP_01_M00471 TRANSFAC - 19431323 19431330 4.0E-06 TATAAATA 8 V_LBP9_01_M01592 TRANSFAC + 19421946 19421962 7.0E-06 CCAGCAGGAACTGGCTC 17 V_OCT2_01_M01368 TRANSFAC + 19431266 19431281 7.0E-06 TAGAATGCTAATCATC 16 V_LUN1_01_M00480 TRANSFAC - 19431404 19431420 1.0E-06 TCCCAGCTACTTAGGAG 17 V_GFI1B_01_M01058 TRANSFAC + 19431252 19431263 0.0E+00 TAAATCACAGCA 12 V_NKX22_01_M00485 TRANSFAC - 19431129 19431138 2.0E-06 TTAAGTGTTT 10 V_PLZF_02_M01075 TRANSFAC - 19418439 19418467 2.0E-06 GCAGTTAACCTTTAAAGTTTTTTTTTCTT 29 V_MEF3_B_M00319 TRANSFAC + 19431207 19431219 1.0E-06 TGCTCAGGTTATT 13 V_SRF_06_M02916 TRANSFAC + 19418434 19418450 8.0E-06 AAAGAAAGAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 19418436 19418452 5.0E-06 AGAAAGAAAAAAAAACT 17 V_SRF_06_M02916 TRANSFAC + 19418437 19418453 0.0E+00 GAAAGAAAAAAAAACTT 17 V_SRF_06_M02916 TRANSFAC + 19418438 19418454 0.0E+00 AAAGAAAAAAAAACTTT 17 V_SRF_06_M02916 TRANSFAC + 19418439 19418455 7.0E-06 AAGAAAAAAAAACTTTA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 19421878 19421895 3.0E-06 GGAAAGAAAGAATGAATG 18 V_FOXJ2_01_M00422 TRANSFAC - 19431318 19431335 1.0E-05 CTCCCTATAAATATTCCT 18 V_HOXD8_01_M01432 TRANSFAC + 19431128 19431144 2.0E-06 TAAACACTTAATGAATA 17 V_HOXD8_01_M01432 TRANSFAC - 19431129 19431145 8.0E-06 TTATTCATTAAGTGTTT 17 V_HOMEZ_01_M01429 TRANSFAC - 19418417 19418433 2.0E-06 TAGAAATCGTTTTTACT 17 V_PIT1_Q6_M00802 TRANSFAC + 19431122 19431139 9.0E-06 TCTTCATAAACACTTAAT 18 V_HMX3_02_M01413 TRANSFAC + 19431127 19431143 0.0E+00 ATAAACACTTAATGAAT 17 V_GFI1_Q6_01_M02010 TRANSFAC - 19431252 19431261 3.0E-06 CTGTGATTTA 10 V_PAX2_02_M00486 TRANSFAC + 19418594 19418602 3.0E-06 ATTAAACTC 9 V_ZIC1_05_M02939 TRANSFAC + 19421942 19421956 7.0E-06 CAACCCAGCAGGAAC 15 V_AP2_Q3_M00800 TRANSFAC - 19422019 19422034 8.0E-06 GCCCGCAGGCGGCGCT 16 V_NANOG_02_M01247 TRANSFAC + 19418428 19418447 0.0E+00 TTTCTAAAAGAAAGAAAAAA 20 V_NANOG_02_M01247 TRANSFAC + 19418432 19418451 1.0E-06 TAAAAGAAAGAAAAAAAAAC 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.