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C12orf49 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79794 chromosome 12 open reading frame 49 chr12 - 117175343 - 117180843 117175843 Transcription Factor Binding Sites   Download all TFBS in the C12orf49 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 117172365 117172382 5.0E-06 TCAATCAATATTTGGATT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 117172365 117172382 1.0E-06 AATCCAAATATTGATTGA 18 NFE2_bZIP_DBD_dimeric_11_1 SELEX + 117171609 117171619 5.0E-06 AGTGACTCATC 11 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX + 117172290 117172303 1.0E-06 GAGGTGAAAGGTTA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 117171680 117171696 9.0E-06 AAATATAAGAGTAAAAA 17 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 117174117 117174129 7.0E-06 CAGGGGTCACAAG 13 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX + 117172290 117172303 2.0E-06 GAGGTGAAAGGTTA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX + 117172290 117172303 1.0E-06 GAGGTGAAAGGTTA 14 HINFP1_C2H2_full_monomeric_12_1 SELEX - 117175710 117175721 8.0E-06 CCACGTCCGCGC 12 EWSR1-FLI1_MA0149.1 JASPAR + 117175539 117175556 6.0E-06 AAGGGGGAGGAAGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 117175543 117175560 0.0E+00 GGGAGGAAGGAAGGAAGA 18 EWSR1-FLI1_MA0149.1 JASPAR + 117175547 117175564 0.0E+00 GGAAGGAAGGAAGAAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 117175551 117175568 0.0E+00 GGAAGGAAGAAGGGAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 117175555 117175572 2.0E-06 GGAAGAAGGGAAGGGGAG 18 SOX9_HMG_DBD_monomeric_9_1 SELEX + 117174042 117174050 9.0E-06 AAACAATGG 9 NFYA_MA0060.1 JASPAR - 117175960 117175975 2.0E-06 CTTAACCAATAGGAGG 16 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 117175971 117175978 1.0E-05 GCACTTAA 8 IRF7_IRF_DBD_trimeric_17_1 SELEX - 117176186 117176202 2.0E-06 GAAAAAAAAATCGCGTT 17 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 117172367 117172380 4.0E-06 TCCAAATATTGATT 14 Pax4_MA0068.1 JASPAR - 117176171 117176200 5.0E-06 AAAAAAAATCGCGTTCTCTTTTTACCTGCC 30 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 117172367 117172380 3.0E-06 TCCAAATATTGATT 14 ONECUT1_CUT_full_monomeric_14_1 SELEX + 117172363 117172376 8.0E-06 GTTCAATCAATATT 14 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 117174230 117174239 6.0E-06 CCAATAAAAG 10 SP1_MA0079.2 JASPAR - 117175569 117175578 9.0E-06 CCCCTCCTCC 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX + 117172290 117172304 1.0E-06 GAGGTGAAAGGTTAG 15 SRY_MA0084.1 JASPAR + 117174040 117174048 1.0E-06 TTAAACAAT 9 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 117172367 117172380 6.0E-06 AATCAATATTTGGA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 117172367 117172380 5.0E-06 TCCAAATATTGATT 14 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX + 117172290 117172303 1.0E-06 GAGGTGAAAGGTTA 14 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 117174230 117174239 5.0E-06 CCAATAAAAG 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 117172367 117172380 9.0E-06 TCCAAATATTGATT 14 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 117174230 117174238 6.0E-06 CCAATAAAA 9 JDP2_bZIP_full_dimeric_9_1 SELEX - 117171610 117171618 1.0E-05 ATGAGTCAC 9 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 117174204 117174213 8.0E-06 GTCACATGAT 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 117174230 117174239 3.0E-06 CCAATAAAAG 10 SOX9_MA0077.1 JASPAR + 117174042 117174050 2.0E-06 AAACAATGG 9 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX + 117172290 117172303 1.0E-06 GAGGTGAAAGGTTA 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX + 117174230 117174239 5.0E-06 CCAATAAAAG 10 V_KLF15_Q2_M01714 TRANSFAC - 117175881 117175894 1.0E-06 GAGGCGGGGCGTAG 14 V_ATF5_01_M01295 TRANSFAC - 117175552 117175562 3.0E-06 CTTCTTCCTTC 11 V_SOX14_05_M02902 TRANSFAC + 117174039 117174053 3.0E-06 TTTAAACAATGGCCC 15 V_NFY_Q6_M00185 TRANSFAC - 117175963 117175973 8.0E-06 TAACCAATAGG 11 V_EVI1_04_M00081 TRANSFAC - 117176194 117176208 1.0E-06 AGAAAAGAAAAAAAA 15 V_EBOX_Q6_01_M01034 TRANSFAC + 117175866 117175875 2.0E-06 CCACGTGACC 10 V_FOXJ2_02_M00423 TRANSFAC + 117172366 117172379 9.0E-06 CAATCAATATTTGG 14 V_CEBP_C_M00201 TRANSFAC - 117174238 117174255 1.0E-05 TGAGTGTTGTAAGTCCCT 18 V_SP1_03_M02281 TRANSFAC - 117175569 117175578 9.0E-06 CCCCTCCTCC 10 V_NFY_Q6_01_M00775 TRANSFAC - 117175964 117175976 7.0E-06 ACTTAACCAATAG 13 V_TCFAP2E_04_M02926 TRANSFAC - 117176192 117176205 4.0E-06 AAAGAAAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC - 117176193 117176206 1.0E-06 AAAAGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 117176194 117176207 2.0E-06 GAAAAGAAAAAAAA 14 V_HBP1_Q2_M01661 TRANSFAC + 117172364 117172372 3.0E-06 TTCAATCAA 9 V_KLF7_04_M02877 TRANSFAC - 117171665 117171681 6.0E-06 AATGGTACGCCCATAAA 17 V_ELF4_04_M02850 TRANSFAC - 117171687 117171703 1.0E-06 TTTCAAAAAATATAAGA 17 V_ZFP128_03_M02828 TRANSFAC + 117171666 117171682 1.0E-06 TTATGGGCGTACCATTT 17 V_SPI1_03_M02078 TRANSFAC + 117175612 117175621 3.0E-06 TGAGGAAGTA 10 V_ZFP105_03_M02827 TRANSFAC - 117171688 117171702 8.0E-06 TTCAAAAAATATAAG 15 V_ZFP105_03_M02827 TRANSFAC - 117176190 117176204 9.0E-06 AAGAAAAAAAAATCG 15 V_HNF3G_Q4_M02015 TRANSFAC + 117172358 117172365 7.0E-06 TGTTTGTT 8 V_ARID5A_03_M02736 TRANSFAC - 117172365 117172378 3.0E-06 CAAATATTGATTGA 14 V_SP4_03_M02810 TRANSFAC - 117175981 117175997 3.0E-06 TTGTCCGCCCCCTTTCC 17 V_KROX_Q6_M00982 TRANSFAC + 117175887 117175900 6.0E-06 CCCGCCTCCGCTCC 14 V_MAZ_Q6_01_M02023 TRANSFAC + 117175566 117175579 6.0E-06 AGGGGAGGAGGGGA 14 V_AP2BETA_Q3_M01858 TRANSFAC - 117175799 117175814 9.0E-06 GCGCCTGCCTGGAGGG 16 V_HNF3_Q6_M00791 TRANSFAC - 117172356 117172368 6.0E-06 TTGAACAAACAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 117172358 117172368 3.0E-06 TGTTTGTTCAA 11 V_IRF_Q6_M00772 TRANSFAC + 117176194 117176208 5.0E-06 TTTTTTTTCTTTTCT 15 V_LEF1_03_M02878 TRANSFAC + 117172360 117172375 7.0E-06 TTTGTTCAATCAATAT 16 V_JUNDM2_04_M02876 TRANSFAC - 117171607 117171622 9.0E-06 GCGGATGAGTCACTGA 16 V_REST_01_M01256 TRANSFAC - 117175638 117175659 8.0E-06 GGTGGGTGCTCGCCCTGGTCTT 22 V_MEF2_04_M00233 TRANSFAC - 117171686 117171707 7.0E-06 TGTGTTTCAAAAAATATAAGAG 22 V_LMO2COM_01_M00277 TRANSFAC - 117176310 117176321 7.0E-06 CGGCAGGTGCAC 12 V_STAT3_03_M01595 TRANSFAC + 117175974 117175989 5.0E-06 AGTGCCGGGAAAGGGG 16 V_SOX11_03_M02795 TRANSFAC + 117174038 117174054 4.0E-06 ATTTAAACAATGGCCCA 17 V_SOX9_B1_M00410 TRANSFAC + 117174039 117174052 9.0E-06 TTTAAACAATGGCC 14 V_IRF7_01_M00453 TRANSFAC - 117172369 117172386 7.0E-06 TGGGAATCCAAATATTGA 18 V_CAAT_01_M00254 TRANSFAC - 117176119 117176130 7.0E-06 CCAAGCCAATCA 12 V_AML2_Q3_01_M01854 TRANSFAC + 117175679 117175689 1.0E-06 CCACACCATGG 11 V_CIZ_01_M00734 TRANSFAC - 117171692 117171700 6.0E-06 CAAAAAATA 9 V_RARA_04_M02891 TRANSFAC - 117175867 117175882 3.0E-06 AGGGCGGGGTCACGTG 16 V_MTF1_06_M02882 TRANSFAC - 117176195 117176208 1.0E-06 AGAAAAGAAAAAAA 14 V_NFYC_Q5_M02107 TRANSFAC - 117176115 117176128 1.0E-05 AAGCCAATCACCCG 14 V_TAL1_01_M01591 TRANSFAC + 117176198 117176210 3.0E-06 TTTTCTTTTCTCC 13 V_TFEB_01_M01768 TRANSFAC + 117174204 117174213 7.0E-06 GTCACATGAT 10 V_TFEB_01_M01768 TRANSFAC - 117174204 117174213 7.0E-06 ATCATGTGAC 10 V_FOXL1_04_M02753 TRANSFAC + 117174035 117174051 8.0E-06 AGTATTTAAACAATGGC 17 NR1H2_RXRA_MA0115.1 JASPAR + 117172289 117172305 2.0E-06 AGAGGTGAAAGGTTAGC 17 V_TCF7L2_04_M02922 TRANSFAC + 117172360 117172375 1.0E-05 TTTGTTCAATCAATAT 16 V_NFY_01_M00287 TRANSFAC - 117175960 117175975 4.0E-06 CTTAACCAATAGGAGG 16 V_FPM315_01_M01587 TRANSFAC + 117175566 117175577 4.0E-06 AGGGGAGGAGGG 12 V_TCF4_Q5_M00671 TRANSFAC - 117176441 117176448 1.0E-05 CCTTTGAA 8 V_SPIC_02_M02077 TRANSFAC + 117175612 117175621 3.0E-06 TGAGGAAGTA 10 V_BBX_03_M02739 TRANSFAC + 117171520 117171534 8.0E-06 CAAATCAATGTAGTG 15 V_BBX_03_M02739 TRANSFAC + 117172361 117172375 8.0E-06 TTGTTCAATCAATAT 15 V_BBX_03_M02739 TRANSFAC - 117172361 117172375 7.0E-06 ATATTGATTGAACAA 15 V_SOX14_04_M02901 TRANSFAC - 117176057 117176073 8.0E-06 CTATTGGGTGGTTTCTT 17 V_SRF_06_M02916 TRANSFAC - 117176190 117176206 4.0E-06 AAAAGAAAAAAAAATCG 17 V_SRF_06_M02916 TRANSFAC - 117176191 117176207 1.0E-06 GAAAAGAAAAAAAAATC 17 V_SRF_06_M02916 TRANSFAC - 117176192 117176208 4.0E-06 AGAAAAGAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC - 117176193 117176209 2.0E-06 GAGAAAAGAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 117176194 117176210 9.0E-06 GGAGAAAAGAAAAAAAA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 117175539 117175556 6.0E-06 AAGGGGGAGGAAGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 117175543 117175560 0.0E+00 GGGAGGAAGGAAGGAAGA 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 117175547 117175564 0.0E+00 GGAAGGAAGGAAGAAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 117175551 117175568 0.0E+00 GGAAGGAAGAAGGGAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 117175555 117175572 2.0E-06 GGAAGAAGGGAAGGGGAG 18 V_HNF3B_Q6_M02014 TRANSFAC + 117172357 117172365 1.0E-05 TTGTTTGTT 9 V_SOX12_03_M02796 TRANSFAC - 117174037 117174050 8.0E-06 CCATTGTTTAAATA 14 V_SRY_05_M02917 TRANSFAC + 117174037 117174053 5.0E-06 TATTTAAACAATGGCCC 17 V_TFE_Q6_M01029 TRANSFAC - 117174205 117174212 1.0E-05 TCATGTGA 8 V_RXRLXRB_01_M01198 TRANSFAC + 117172291 117172303 7.0E-06 AGGTGAAAGGTTA 13 V_CMAF_01_M01070 TRANSFAC + 117176152 117176170 9.0E-06 GTGATTGCTGAATTGTCTG 19 V_PBX1_Q3_M02028 TRANSFAC + 117172364 117172372 6.0E-06 TTCAATCAA 9 V_RNF96_01_M01199 TRANSFAC + 117175825 117175834 7.0E-06 GCCCGCAGCC 10 V_TCF3_05_M02920 TRANSFAC - 117176191 117176205 8.0E-06 AAAGAAAAAAAAATC 15 V_TCF3_05_M02920 TRANSFAC - 117176192 117176206 3.0E-06 AAAAGAAAAAAAAAT 15 V_SPIB_03_M02076 TRANSFAC + 117175612 117175621 1.0E-06 TGAGGAAGTA 10 V_TR4_03_M01782 TRANSFAC + 117172291 117172303 2.0E-06 AGGTGAAAGGTTA 13 V_NANOG_02_M01247 TRANSFAC - 117176192 117176211 8.0E-06 GGGAGAAAAGAAAAAAAAAT 20 V_PPARG_01_M00512 TRANSFAC + 117172287 117172307 0.0E+00 CAAGAGGTGAAAGGTTAGCAG 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.