Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C1orf115 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79762 chromosome 1 open reading frame 115 chr1 + 220858627 - 220864127 220863627 Transcription Factor Binding Sites   Download all TFBS in the C1orf115 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HINFP1_C2H2_full_dimeric_19_1 SELEX + 220863910 220863928 7.0E-06 GCGGACGAGCGGGGCCCGG 19 SOX21_HMG_DBD_dimeric_15_1 SELEX + 220866081 220866095 5.0E-06 AACAATGTAAATGTA 15 SOX4_HMG_DBD_dimeric_16_1 SELEX - 220866081 220866096 2.0E-06 GTACATTTACATTGTT 16 POU2F1_POU_DBD_dimeric_14_1 SELEX - 220863486 220863499 7.0E-06 AATGAACATGCAAA 14 SRY_HMG_DBD_dimeric_15_1 SELEX - 220866081 220866095 0.0E+00 TACATTTACATTGTT 15 SOX2_HMG_full_dimeric_17_1 SELEX - 220866080 220866096 1.0E-06 GTACATTTACATTGTTG 17 HNF1B_MA0153.1 JASPAR + 220866010 220866021 8.0E-06 TTAATGGGTAAT 12 NFIL3_MA0025.1 JASPAR + 220864330 220864340 1.0E-06 TTATGTAAGAT 11 STAT1_MA0137.2 JASPAR + 220863245 220863259 1.0E-06 TATTTCCTAGAATAC 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 220866081 220866095 1.0E-06 TACATTTACATTGTT 15 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 220865797 220865806 6.0E-06 AGCCATAAAA 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 220863128 220863137 9.0E-06 GCCATATGCT 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 220865797 220865807 3.0E-06 AGCCATAAAAG 11 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 220863486 220863499 7.0E-06 AATGAACATGCAAA 14 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 220865809 220865822 8.0E-06 AAGGAAATGTACTA 14 SOX18_HMG_full_dimeric_15_1 SELEX + 220866081 220866095 3.0E-06 AACAATGTAAATGTA 15 SOX18_HMG_full_dimeric_15_1 SELEX - 220866081 220866095 9.0E-06 TACATTTACATTGTT 15 SOX15_HMG_full_dimeric_15_1 SELEX - 220866081 220866095 5.0E-06 TACATTTACATTGTT 15 SOX7_HMG_full_dimeric_17_1 SELEX - 220866080 220866096 3.0E-06 GTACATTTACATTGTTG 17 SOX14_HMG_DBD_dimeric_12_1 SELEX - 220866083 220866094 4.0E-06 ACATTTACATTG 12 Stat3_MA0144.1 JASPAR - 220863247 220863256 8.0E-06 TTCTAGGAAA 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 220865798 220865806 4.0E-06 GCCATAAAA 9 ZBTB7C_C2H2_full_monomeric_12_1 SELEX - 220865962 220865973 7.0E-06 GCAACCACCAAT 12 NR3C1_MA0113.1 JASPAR + 220865806 220865823 2.0E-06 AGGAAGGAAATGTACTAA 18 Sox11_HMG_DBD_dimeric_15_1 SELEX - 220866081 220866095 3.0E-06 TACATTTACATTGTT 15 Sox3_HMG_DBD_dimeric_17_1 SELEX + 220866080 220866096 4.0E-06 CAACAATGTAAATGTAC 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 220866080 220866096 4.0E-06 GTACATTTACATTGTTG 17 Sox1_HMG_DBD_dimeric_15_1 SELEX - 220866081 220866095 4.0E-06 TACATTTACATTGTT 15 ELF5_MA0136.1 JASPAR + 220863154 220863162 5.0E-06 AATTTCCTT 9 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 220865798 220865806 8.0E-06 GCCATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 220865798 220865806 8.0E-06 GCCATAAAA 9 SOX9_HMG_full_dimeric_17_1 SELEX - 220866080 220866096 8.0E-06 GTACATTTACATTGTTG 17 V_ELF5_03_M02057 TRANSFAC - 220866026 220866035 8.0E-06 CCAGGAAAAA 10 V_MEQ_01_M02049 TRANSFAC - 220866020 220866028 4.0E-06 AAAACACAT 9 V_HSF2_01_M00147 TRANSFAC + 220864295 220864304 1.0E-05 AGAACATTCT 10 V_HSF2_01_M00147 TRANSFAC - 220864295 220864304 2.0E-06 AGAATGTTCT 10 V_STAT5A_Q6_M01890 TRANSFAC + 220863244 220863256 2.0E-06 ATATTTCCTAGAA 13 V_ZFP187_03_M02830 TRANSFAC + 220865813 220865826 1.0E-06 AAATGTACTAATCC 14 V_BCL6_Q3_01_M02085 TRANSFAC + 220863247 220863256 6.0E-06 TTTCCTAGAA 10 V_E2F4_Q6_M02090 TRANSFAC + 220865982 220865991 3.0E-06 GCGGGAAAGA 10 V_BCL6B_03_M02740 TRANSFAC - 220863095 220863110 1.0E-05 GATTTTCAGGAATATC 16 V_BCL6B_03_M02740 TRANSFAC - 220863244 220863259 8.0E-06 GTATTCTAGGAAATAT 16 V_ACAAT_B_M00309 TRANSFAC + 220865961 220865969 8.0E-06 GATTGGTGG 9 V_ZEC_01_M01081 TRANSFAC + 220865961 220865973 5.0E-06 GATTGGTGGTTGC 13 V_MTF1_Q4_M00650 TRANSFAC + 220863708 220863721 4.0E-06 TTTGCGCTCGGACC 14 V_FOXO4_02_M00476 TRANSFAC - 220865868 220865881 6.0E-06 GTCTTGTTTACTTC 14 V_SPDEF_04_M02915 TRANSFAC + 220863242 220863257 7.0E-06 GAATATTTCCTAGAAT 16 V_STAT5B_01_M00459 TRANSFAC + 220863245 220863259 0.0E+00 TATTTCCTAGAATAC 15 V_STAT5B_01_M00459 TRANSFAC - 220863245 220863259 1.0E-06 GTATTCTAGGAAATA 15 V_GKLF_02_M01588 TRANSFAC - 220863546 220863557 5.0E-06 GCCCCGCCCTTC 12 V_PU1_Q4_M01172 TRANSFAC - 220865801 220865819 1.0E-06 TACATTTCCTTCCTTTTAT 19 V_NR3C1_01_M02219 TRANSFAC + 220865806 220865823 2.0E-06 AGGAAGGAAATGTACTAA 18 V_CETS1P54_02_M00074 TRANSFAC - 220863153 220863165 8.0E-06 GCAAAGGAAATTC 13 V_HMGA2_01_M01300 TRANSFAC + 220863096 220863110 6.0E-06 ATATTCCTGAAAATC 15 V_GC_01_M00255 TRANSFAC + 220863546 220863559 6.0E-06 GAAGGGCGGGGCTG 14 V_DBP_Q6_01_M01872 TRANSFAC + 220864330 220864337 5.0E-06 TTATGTAA 8 V_FOXO1_02_M00474 TRANSFAC - 220865868 220865881 0.0E+00 GTCTTGTTTACTTC 14 V_HSF1_01_M00146 TRANSFAC + 220864295 220864304 7.0E-06 AGAACATTCT 10 V_HSF1_01_M00146 TRANSFAC - 220864295 220864304 1.0E-06 AGAATGTTCT 10 V_CEBPB_02_M00117 TRANSFAC + 220866072 220866085 5.0E-06 TGGTTGCACAACAA 14 V_IRX4_01_M01410 TRANSFAC - 220863483 220863499 4.0E-06 AATGAACATGCAAAACA 17 V_HNF1B_04_M02266 TRANSFAC + 220866010 220866021 8.0E-06 TTAATGGGTAAT 12 V_SOX18_03_M02801 TRANSFAC - 220866075 220866090 9.0E-06 TTACATTGTTGTGCAA 16 V_SFPI1_04_M02896 TRANSFAC - 220863236 220863249 9.0E-06 AAATATTCGGAAAC 14 V_PAX6_Q2_M00979 TRANSFAC - 220859448 220859461 6.0E-06 CTGAGCTGTTACTT 14 V_OCT1_04_M00138 TRANSFAC + 220866077 220866099 5.0E-06 GCACAACAATGTAAATGTACTAA 23 V_REX1_03_M01744 TRANSFAC - 220863840 220863851 4.0E-06 AGGATGGCGGCC 12 V_HFH1_01_M00129 TRANSFAC - 220865869 220865880 7.0E-06 TCTTGTTTACTT 12 V_SRF_Q5_02_M01007 TRANSFAC - 220865795 220865813 7.0E-06 TCCTTCCTTTTATGGCTGA 19 V_STAT4_Q5_M02117 TRANSFAC - 220863247 220863256 1.0E-06 TTCTAGGAAA 10 V_STAF_02_M00264 TRANSFAC - 220865970 220865990 6.0E-06 CTTTCCCGCAGTCCCTGGCAA 21 V_LMO2COM_01_M00277 TRANSFAC - 220863853 220863864 9.0E-06 CTCCAGGTGCTC 12 V_IRX3_01_M01318 TRANSFAC + 220866084 220866100 8.0E-06 AATGTAAATGTACTAAA 17 V_SRF_03_M01304 TRANSFAC + 220865797 220865809 1.0E-06 AGCCATAAAAGGA 13 V_PAX8_B_M00328 TRANSFAC - 220865821 220865838 5.0E-06 ATATTGTAGCATGGATTA 18 V_HOXD9_Q2_M01834 TRANSFAC + 220865797 220865806 6.0E-06 AGCCATAAAA 10 V_SP4_Q5_M01273 TRANSFAC + 220863652 220863662 7.0E-06 CCCCCGCCCCG 11 V_OCT1_Q6_M00195 TRANSFAC - 220863482 220863496 5.0E-06 GAACATGCAAAACAC 15 V_FOXO3_01_M00477 TRANSFAC - 220865868 220865881 2.0E-06 GTCTTGTTTACTTC 14 V_SRF_Q5_01_M00922 TRANSFAC + 220865799 220865813 8.0E-06 CCATAAAAGGAAGGA 15 V_SRF_02_M01257 TRANSFAC + 220865797 220865814 1.0E-06 AGCCATAAAAGGAAGGAA 18 V_STAT5A_01_M00457 TRANSFAC + 220863245 220863259 8.0E-06 TATTTCCTAGAATAC 15 V_STAT5A_01_M00457 TRANSFAC - 220863245 220863259 1.0E-06 GTATTCTAGGAAATA 15 V_ELF5_04_M02241 TRANSFAC + 220863154 220863162 5.0E-06 AATTTCCTT 9 V_IRXB3_01_M01377 TRANSFAC + 220866084 220866100 8.0E-06 AATGTAAATGTACTAAA 17 V_STAT1_Q6_M01823 TRANSFAC - 220863247 220863256 2.0E-06 TTCTAGGAAA 10 V_STAT1_05_M01260 TRANSFAC - 220863238 220863259 1.0E-06 GTATTCTAGGAAATATTCGGAA 22 V_FOXK1_03_M02752 TRANSFAC + 220865866 220865882 9.0E-06 GTGAAGTAAACAAGACC 17 V_TCF11_01_M00285 TRANSFAC + 220859464 220859476 8.0E-06 GTCATTCTAGGAG 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.