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PALB2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79728 partner and localizer of BRCA2 chr16 - 23652178 - 23657678 23652678 Transcription Factor Binding Sites   Download all TFBS in the PALB2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR + 23652785 23652795 5.0E-06 CCGGAAGTAGC 11 VSX1_homeodomain_full_monomeric_11_1 SELEX + 23652651 23652661 9.0E-06 GGCCAATTAAA 11 IRF7_IRF_DBD_dimeric_14_1 SELEX - 23652280 23652293 0.0E+00 CAGAAAATGAAAAT 14 Alx1_homeodomain_DBD_dimeric_13_1 SELEX - 23652227 23652239 8.0E-06 CAAATTTCATTAC 13 MSX1_homeodomain_full_monomeric_8_1 SELEX + 23652653 23652660 7.0E-06 CCAATTAA 8 RHOXF1_homeodomain_full_dimeric_9_1 SELEX - 23653029 23653037 8.0E-06 AGATAATCC 9 MSX2_homeodomain_DBD_monomeric_8_1 SELEX + 23652653 23652660 7.0E-06 CCAATTAA 8 IRF1_MA0050.1 JASPAR - 23652280 23652291 4.0E-06 GAAAATGAAAAT 12 PROP1_homeodomain_full_dimeric_11_1 SELEX - 23652228 23652238 5.0E-06 AAATTTCATTA 11 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 23652653 23652662 9.0E-06 CCAATTAAAT 10 ALX3_homeodomain_full_dimeric_13_1 SELEX - 23652227 23652239 6.0E-06 CAAATTTCATTAC 13 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 23652652 23652661 8.0E-06 GCCAATTAAA 10 MAX_bHLH_DBD_dimer-of-dimers_17_1 SELEX + 23652255 23652271 7.0E-06 CACGTGAGCACCACGCT 17 SP1_MA0079.2 JASPAR + 23652047 23652056 9.0E-06 CCCCTCCTCC 10 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 23652227 23652239 7.0E-06 CAAATTTCATTAC 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 23652227 23652239 8.0E-06 CAAATTTCATTAC 13 SPDEF_ETS_full_putative-multimer_15_1 SELEX + 23653021 23653035 0.0E+00 TTAGTCCCGGATTAT 15 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 23653061 23653072 9.0E-06 AAACAGCAAAGC 12 BSX_homeodomain_DBD_monomeric_8_1 SELEX + 23652653 23652660 7.0E-06 CCAATTAA 8 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 23652278 23652292 1.0E-05 AGAAAATGAAAATGT 15 Msx3_homeodomain_DBD_monomeric_8_1 SELEX + 23652653 23652660 7.0E-06 CCAATTAA 8 ELK1_ETS_full_monomeric_10_1 SELEX + 23652784 23652793 7.0E-06 GCCGGAAGTA 10 GABPA_ETS_full_monomeric_10_1 SELEX + 23652784 23652793 5.0E-06 GCCGGAAGTA 10 HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 23652652 23652662 6.0E-06 GCCAATTAAAT 11 LBX2_homeodomain_DBD_monomeric_10_1 SELEX + 23652652 23652661 6.0E-06 GCCAATTAAA 10 Elk3_ETS_DBD_monomeric_10_1 SELEX + 23652784 23652793 6.0E-06 GCCGGAAGTA 10 ETV6_ETS_full_monomeric_10_1 SELEX + 23652766 23652775 1.0E-06 AGCGGAAGTG 10 ETV6_ETS_full_dimeric_15_1 SELEX + 23652761 23652775 9.0E-06 CCTGGAGCGGAAGTG 15 NRF1_NRF_full_dimeric_12_1 SELEX + 23652676 23652687 3.0E-06 TGCGCACGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 23652676 23652687 4.0E-06 TGCGCGTGCGCA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 23652652 23652662 1.0E-05 GCCAATTAAAT 11 DPRX_homeodomain_DBD_monomeric_11_1 SELEX - 23653028 23653038 6.0E-06 TAGATAATCCG 11 TP63_p53l_DBD_dimeric_18_1 SELEX - 23653152 23653169 6.0E-06 AACAGGATGGGACTTGTC 18 HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 23652652 23652662 1.0E-05 GCCAATTAAAT 11 V_MYB_Q6_M00183 TRANSFAC - 23653085 23653094 4.0E-06 CTCAACTGGC 10 V_FOXP1_01_M00987 TRANSFAC + 23653100 23653119 8.0E-06 TTGTATTTATTCCTGATTTT 20 V_CEBPG_Q6_M00622 TRANSFAC + 23651548 23651560 1.0E-05 TTTACTTATAAAT 13 V_KLF15_Q2_M01714 TRANSFAC - 23652042 23652055 4.0E-06 GAGGAGGGGCGTAT 14 V_HMGIY_Q3_M01010 TRANSFAC + 23652229 23652243 6.0E-06 AATGAAATTTGTTCT 15 V_BCL6_01_M01183 TRANSFAC - 23652102 23652117 9.0E-06 CCTCAAGTAAATCTTT 16 V_GABP_B_M00341 TRANSFAC + 23652766 23652777 4.0E-06 AGCGGAAGTGGA 12 V_IRF_Q6_01_M00972 TRANSFAC - 23652281 23652291 2.0E-06 GAAAATGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC - 23652278 23652293 3.0E-06 CAGAAAATGAAAATGT 16 V_SP1_03_M02281 TRANSFAC + 23652047 23652056 9.0E-06 CCCCTCCTCC 10 V_STAT6_01_M00494 TRANSFAC + 23652271 23652278 7.0E-06 TATTTCCA 8 V_OCT_C_M00210 TRANSFAC + 23652277 23652289 8.0E-06 CACATTTTCATTT 13 V_TCFAP2E_04_M02926 TRANSFAC - 23653251 23653264 1.0E-06 TCCTCAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 23653252 23653265 4.0E-06 TTCCTCAAAAAAAA 14 V_PEA3_01_M01991 TRANSFAC + 23652784 23652793 8.0E-06 GCCGGAAGTA 10 V_KLF7_04_M02877 TRANSFAC + 23652038 23652054 6.0E-06 AGGGATACGCCCCTCCT 17 V_SPIC_01_M02042 TRANSFAC + 23652766 23652775 9.0E-06 AGCGGAAGTG 10 V_ELF4_04_M02850 TRANSFAC - 23653247 23653263 1.0E-06 CCTCAAAAAAAAAGAAC 17 V_SOX13_03_M02797 TRANSFAC - 23652231 23652246 6.0E-06 TAAAGAACAAATTTCA 16 V_ZNF219_01_M01122 TRANSFAC - 23652151 23652162 1.0E-06 CTCCCCCCTCCC 12 V_ZFP105_03_M02827 TRANSFAC - 23653248 23653262 1.0E-06 CTCAAAAAAAAAGAA 15 V_HOXB13_01_M01467 TRANSFAC + 23652650 23652665 6.0E-06 CGGCCAATTAAATCCA 16 V_ZBP89_Q4_M01816 TRANSFAC - 23652155 23652164 6.0E-06 TCCTCCCCCC 10 V_HOXB9_01_M01426 TRANSFAC + 23652650 23652665 9.0E-06 CGGCCAATTAAATCCA 16 V_ER81_02_M02065 TRANSFAC + 23652784 23652793 8.0E-06 GCCGGAAGTA 10 V_HNF3A_01_M01261 TRANSFAC - 23653067 23653076 7.0E-06 GAGTAAACAG 10 V_MAZ_Q6_01_M02023 TRANSFAC + 23652149 23652162 1.0E-05 GTGGGAGGGGGGAG 14 V_AP2BETA_Q3_M01858 TRANSFAC - 23652297 23652312 4.0E-06 TCTTAGGGCTGAGGGG 16 V_IRF_Q6_M00772 TRANSFAC + 23652277 23652291 0.0E+00 CACATTTTCATTTTC 15 V_ISRE_01_M00258 TRANSFAC + 23652279 23652293 8.0E-06 CATTTTCATTTTCTG 15 V_PAX6_Q2_M00979 TRANSFAC + 23652079 23652092 7.0E-06 AGGACCTGGAAGTA 14 V_OCT1_04_M00138 TRANSFAC - 23651546 23651568 4.0E-06 GAAAGATCATTTATAAGTAAACA 23 V_SOX12_04_M02900 TRANSFAC + 23652008 23652023 5.0E-06 AAATATACATAGGATT 16 V_ZBRK1_01_M01105 TRANSFAC - 23652285 23652299 7.0E-06 GGGGCACAGAAAATG 15 V_TEL2_Q6_M00678 TRANSFAC - 23652785 23652794 6.0E-06 CTACTTCCGG 10 V_PEA3_02_M02066 TRANSFAC + 23652784 23652793 8.0E-06 GCCGGAAGTA 10 V_GLI3_Q5_01_M01657 TRANSFAC - 23652057 23652065 6.0E-06 GTGGGTGGT 9 V_ICSBP_Q6_M00699 TRANSFAC - 23652279 23652290 1.0E-05 AAAATGAAAATG 12 V_NET_01_M01982 TRANSFAC + 23652784 23652793 7.0E-06 GCCGGAAGTA 10 V_GR_Q6_02_M01836 TRANSFAC + 23652233 23652245 1.0E-06 AAATTTGTTCTTT 13 V_USF_Q6_01_M00796 TRANSFAC + 23652252 23652263 4.0E-06 CACCACGTGAGC 12 V_GABPBETA_Q3_M01876 TRANSFAC + 23652766 23652776 7.0E-06 AGCGGAAGTGG 11 V_SMAD3_03_M02794 TRANSFAC - 23653050 23653066 1.0E-06 CAAAGCCAGACGGTACA 17 V_ZFP206_01_M01742 TRANSFAC - 23652677 23652687 7.0E-06 TGCGCGTGCGC 11 V_FPM315_01_M01587 TRANSFAC + 23652156 23652167 2.0E-06 GGGGGAGGAGCA 12 V_HNF1B_01_M01425 TRANSFAC + 23653218 23653234 2.0E-06 ATCTGTTAACTTGCGCT 17 V_MECP2_02_M01299 TRANSFAC - 23652643 23652652 7.0E-06 CCGGAGTTTA 10 V_NRF1_Q6_M00652 TRANSFAC - 23652676 23652685 6.0E-06 CGCGTGCGCA 10 V_FOX_Q2_M00809 TRANSFAC - 23652007 23652019 6.0E-06 CTATGTATATTTT 13 V_PLZF_02_M01075 TRANSFAC + 23653222 23653250 5.0E-06 GTTAACTTGCGCTAAAAACGATTCGGTTC 29 V_ZFP281_01_M01597 TRANSFAC - 23652047 23652057 7.0E-06 TGGAGGAGGGG 11 V_OCT1_06_M00162 TRANSFAC + 23652277 23652290 5.0E-06 CACATTTTCATTTT 14 V_SAP1A_03_M02058 TRANSFAC + 23652784 23652793 9.0E-06 GCCGGAAGTA 10 V_IRF1_Q6_01_M01881 TRANSFAC + 23652279 23652292 0.0E+00 CATTTTCATTTTCT 14 V_SRF_06_M02916 TRANSFAC - 23652233 23652249 1.0E-06 GTTTAAAGAACAAATTT 17 V_SRF_06_M02916 TRANSFAC - 23653247 23653263 1.0E-06 CCTCAAAAAAAAAGAAC 17 V_FOXJ2_01_M00422 TRANSFAC - 23653098 23653115 1.0E-05 TCAGGAATAAATACAAAA 18 V_IPF1_Q4_01_M01013 TRANSFAC + 23653014 23653028 7.0E-06 TTGGCCATTAGTCCC 15 V_EKLF_Q5_M01874 TRANSFAC - 23652143 23652152 5.0E-06 CCACACCCTC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 23652046 23652059 1.0E-06 GGTGGAGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 23652409 23652422 4.0E-06 GGTGCGGGAAGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 23652987 23653000 1.0E-06 GGTGGGGTAGGGGC 14 V_BRN3C_01_M01408 TRANSFAC + 23651551 23651566 7.0E-06 ACTTATAAATGATCTT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.