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YRDC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79693 yrdC domain containing (E. coli) chr1 - 38273365 - 38278865 38273865 Transcription Factor Binding Sites   Download all TFBS in the YRDC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 38276074 38276091 0.0E+00 TATGTACACATTGACATA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 38276074 38276091 0.0E+00 TATGTCAATGTGTACATA 18 LBX2_homeodomain_DBD_dimeric_13_1 SELEX + 38276724 38276736 3.0E-06 ATGGATGTGATTA 13 Rxrb_nuclearreceptor_DBD_dimeric_14_1 SELEX - 38275737 38275750 1.0E-06 GGGGTCAGAGTTCA 14 Pax6_MA0069.1 JASPAR + 38276795 38276808 3.0E-06 TTCAGGCATCATTT 14 SRY_HMG_DBD_dimeric_15_1 SELEX - 38275876 38275890 6.0E-06 TGCAATATCCTTGTT 15 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 38276639 38276655 2.0E-06 TAAGACAATTGTAAACT 17 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 38273222 38273236 2.0E-06 TATTTGTGCTAATTG 15 RXRG_nuclearreceptor_full_dimeric_14_1 SELEX - 38275737 38275750 1.0E-06 GGGGTCAGAGTTCA 14 NR2F6_nuclearreceptor_full_dimeric_14_1 SELEX - 38275737 38275750 2.0E-06 GGGGTCAGAGTTCA 14 CEBPA_MA0102.2 JASPAR - 38275885 38275893 4.0E-06 TTTTGCAAT 9 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 38276731 38276742 8.0E-06 TGATTACAAATA 12 STAT1_MA0137.2 JASPAR + 38276050 38276064 6.0E-06 CAATTCCAGTAAAAA 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 38276961 38276975 7.0E-06 TTGCTGAGAATGCAT 15 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 38276961 38276975 9.0E-06 ATGCATTCTCAGCAA 15 Sox1_HMG_DBD_dimeric_13_1 SELEX + 38276049 38276061 5.0E-06 TCAATTCCAGTAA 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 38276721 38276733 1.0E-05 TCACATCCATTGT 13 Pax4_MA0068.1 JASPAR - 38275909 38275938 7.0E-06 GAAAATTTTTCATAAAACCTTTTTGCACCA 30 NR2F1_MA0017.1 JASPAR + 38275737 38275750 2.0E-06 TGAACTCTGACCCC 14 TFAP2B_TFAP_DBD_dimeric_12_1 SELEX - 38276920 38276931 7.0E-06 TGCCCCAGGGCG 12 Ar_MA0007.1 JASPAR + 38276772 38276793 0.0E+00 CTAGGAACAATCTGTTCCTTCC 22 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 38274289 38274298 2.0E-06 AGCAGCTGCT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 38274289 38274298 2.0E-06 AGCAGCTGCT 10 NR2F1_nuclearreceptor_DBD_dimeric_15_1 SELEX - 38275736 38275750 1.0E-06 GGGGTCAGAGTTCAA 15 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 38276960 38276976 5.0E-06 GTTGCTGAGAATGCATA 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 38276774 38276790 1.0E-06 AGGAACAATCTGTTCCT 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 38276774 38276790 1.0E-06 AGGAACAGATTGTTCCT 17 NR2C2_nuclearreceptor_DBD_dimeric_14_1 SELEX - 38275737 38275750 1.0E-06 GGGGTCAGAGTTCA 14 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 38276958 38276978 1.0E-05 CGGTTGCTGAGAATGCATAAT 21 NRL_bZIP_DBD_monomeric_11_1 SELEX - 38276871 38276881 8.0E-06 TTTCTGCTGAC 11 Pou5f1_MA0142.1 JASPAR + 38276806 38276820 8.0E-06 TTTTGTAATGGTGAA 15 Myf_MA0055.1 JASPAR + 38274288 38274299 0.0E+00 CAGCAGCTGCTG 12 Myf_MA0055.1 JASPAR - 38274288 38274299 0.0E+00 CAGCAGCTGCTG 12 SPDEF_ETS_full_putative-multimer_16_1 SELEX + 38275714 38275729 8.0E-06 ACAGGAAAAGGGAACA 16 HNF4A_MA0114.1 JASPAR - 38275737 38275749 3.0E-06 GGGTCAGAGTTCA 13 NR3C1_MA0113.1 JASPAR - 38276773 38276790 3.0E-06 AGGAACAGATTGTTCCTA 18 NR3C1_MA0113.1 JASPAR + 38276774 38276791 1.0E-06 AGGAACAATCTGTTCCTT 18 HNF4A_nuclearreceptor_full_dimeric_14_1 SELEX - 38275737 38275750 2.0E-06 GGGGTCAGAGTTCA 14 ETV6_ETS_full_dimeric_15_1 SELEX - 38273330 38273344 0.0E+00 CCGGAACTGGAAATA 15 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 38276920 38276931 8.0E-06 TGCCCCAGGGCG 12 NHLH1_bHLH_full_dimeric_10_1 SELEX + 38274289 38274298 7.0E-06 AGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 38274289 38274298 7.0E-06 AGCAGCTGCT 10 RXRA_nuclearreceptor_full_dimeric_14_1 SELEX - 38275737 38275750 1.0E-06 GGGGTCAGAGTTCA 14 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX + 38276774 38276790 1.0E-06 AGGAACAATCTGTTCCT 17 NR3C1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 38276774 38276790 1.0E-06 AGGAACAGATTGTTCCT 17 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX + 38276920 38276931 9.0E-06 CGCCCTGGGGCA 12 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 38276920 38276931 7.0E-06 TGCCCCAGGGCG 12 NFIA_NFI_full_monomeric_10_1 SELEX - 38275856 38275865 5.0E-06 TGTGCCAAGT 10 AR_nuclearreceptor_full_dimeric_17_1 SELEX + 38276774 38276790 1.0E-06 AGGAACAATCTGTTCCT 17 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 38276774 38276790 0.0E+00 AGGAACAGATTGTTCCT 17 V_FOXP1_01_M00987 TRANSFAC - 38275760 38275779 4.0E-06 TTCGTTGTGTTTTGGAGAAT 20 V_SRF_Q6_M00186 TRANSFAC + 38275688 38275701 5.0E-06 CCCCAAATAGGGAC 14 V_CEBPG_Q6_M00622 TRANSFAC - 38276805 38276817 4.0E-06 ACCATTACAAAAT 13 V_XVENT1_01_M00445 TRANSFAC - 38273228 38273240 9.0E-06 GGCGTATTTGTGC 13 V_ELK1_04_M01165 TRANSFAC - 38273894 38273904 6.0E-06 GACCGGAAGCT 11 V_ZSCAN4_03_M02838 TRANSFAC - 38276071 38276087 5.0E-06 TCAATGTGTACATAGTA 17 V_TCF3_01_M01594 TRANSFAC + 38274934 38274946 6.0E-06 GCTTTGAAATGCA 13 V_POU3F3_01_M03090 TRANSFAC + 38276965 38276981 3.0E-06 TGAGAATGCATAATAGT 17 V_AR_02_M00953 TRANSFAC - 38276769 38276795 6.0E-06 AAGGAAGGAACAGATTGTTCCTAGGTA 27 V_XPF1_Q6_M00684 TRANSFAC + 38274802 38274811 4.0E-06 TCTGAACAAC 10 V_XPF1_Q6_M00684 TRANSFAC - 38276897 38276906 1.0E-06 TCTGAAGAAC 10 V_NF1_Q6_01_M00806 TRANSFAC + 38274937 38274953 9.0E-06 TTGAAATGCAGCCAATG 17 V_SOX30_03_M02804 TRANSFAC + 38276716 38276731 6.0E-06 TAAGGACAATGGATGT 16 V_BCL6_01_M01183 TRANSFAC + 38275922 38275937 0.0E+00 TTTTATGAAAAATTTT 16 V_POU5F1_02_M02245 TRANSFAC + 38276806 38276820 8.0E-06 TTTTGTAATGGTGAA 15 V_AR_Q6_01_M01996 TRANSFAC - 38276774 38276788 3.0E-06 GAACAGATTGTTCCT 15 V_AR_Q6_01_M01996 TRANSFAC + 38276776 38276790 1.0E-06 GAACAATCTGTTCCT 15 V_MAFB_03_M02879 TRANSFAC + 38275883 38275897 0.0E+00 ATATTGCAAAAAACA 15 V_SP1_Q6_01_M00931 TRANSFAC + 38273987 38273996 4.0E-06 GGGGCGGGGC 10 V_OCTAMER_01_M01324 TRANSFAC + 38276965 38276981 3.0E-06 TGAGAATGCATAATAGT 17 V_ZFP740_03_M02834 TRANSFAC + 38275747 38275762 1.0E-06 CCCCCACCCCCACATT 16 V_POU1F1_Q6_M00744 TRANSFAC + 38276970 38276979 9.0E-06 ATGCATAATA 10 V_CEBP_Q2_M00190 TRANSFAC + 38275883 38275896 1.0E-06 ATATTGCAAAAAAC 14 V_YY1_Q6_M00793 TRANSFAC - 38276827 38276835 7.0E-06 GCCATCTTT 9 V_STAT6_01_M00494 TRANSFAC + 38273330 38273337 7.0E-06 TATTTCCA 8 V_GABPA_04_M02858 TRANSFAC + 38273819 38273834 4.0E-06 CCCTCATCCCCCTGCA 16 V_HNF4A_03_M02220 TRANSFAC - 38275737 38275749 3.0E-06 GGGTCAGAGTTCA 13 V_PPAR_DR1_Q2_M00763 TRANSFAC + 38275737 38275749 1.0E-06 TGAACTCTGACCC 13 V_COUPTF_Q6_M01036 TRANSFAC + 38275732 38275754 1.0E-05 CACCTTGAACTCTGACCCCCACC 23 V_HOXD13_01_M01404 TRANSFAC - 38275918 38275933 6.0E-06 TTTTTCATAAAACCTT 16 V_AP4_Q6_01_M00927 TRANSFAC + 38273102 38273110 1.0E-05 AACAGCTGC 9 V_NR3C1_01_M02219 TRANSFAC - 38276773 38276790 3.0E-06 AGGAACAGATTGTTCCTA 18 V_NR3C1_01_M02219 TRANSFAC + 38276774 38276791 1.0E-06 AGGAACAATCTGTTCCTT 18 V_LDSPOLYA_B_M00317 TRANSFAC - 38274950 38274965 2.0E-06 AGACTGGGTATTCATT 16 V_STAT4_Q4_M01666 TRANSFAC + 38275936 38275949 0.0E+00 TTCCCATAAGAAAA 14 V_PPARGRXRA_01_M02262 TRANSFAC - 38275737 38275751 8.0E-06 GGGGGTCAGAGTTCA 15 V_HMGA2_01_M01300 TRANSFAC - 38275986 38276000 5.0E-06 AAATTGGGTGATAAT 15 V_ZNF219_01_M01122 TRANSFAC - 38274027 38274038 0.0E+00 CGCCCCCCTCCC 12 V_SOX7_03_M02807 TRANSFAC - 38276637 38276658 6.0E-06 AAGAGTTTACAATTGTCTTACA 22 V_SOX7_03_M02807 TRANSFAC + 38276713 38276734 6.0E-06 CTTTAAGGACAATGGATGTGAT 22 V_HELIOSA_02_M01004 TRANSFAC - 38274627 38274637 1.0E-05 GAAAGGAAAAA 11 V_MYF_01_M01302 TRANSFAC + 38274288 38274299 0.0E+00 CAGCAGCTGCTG 12 V_MYF_01_M01302 TRANSFAC - 38274288 38274299 0.0E+00 CAGCAGCTGCTG 12 V_COUP_01_M00158 TRANSFAC + 38275737 38275750 2.0E-06 TGAACTCTGACCCC 14 V_CEBPB_02_M00117 TRANSFAC + 38275883 38275896 7.0E-06 ATATTGCAAAAAAC 14 V_PXRRXR_02_M01153 TRANSFAC + 38275707 38275714 1.0E-05 AGAGTTCA 8 V_PXRRXR_02_M01153 TRANSFAC - 38275737 38275744 1.0E-05 AGAGTTCA 8 V_SP1_Q6_M00196 TRANSFAC + 38273985 38273997 4.0E-06 ACGGGGCGGGGCG 13 V_HOXB6_01_M01460 TRANSFAC - 38276727 38276742 7.0E-06 TATTTGTAATCACATC 16 V_IRF_Q6_M00772 TRANSFAC + 38274629 38274643 8.0E-06 TTTCCTTTCTGTTCC 15 V_NKX25_Q5_M01043 TRANSFAC + 38274902 38274911 6.0E-06 TCCCACTTCA 10 V_NFE4_Q5_M02105 TRANSFAC - 38274024 38274035 7.0E-06 CCCCCTCCCCAG 12 V_NFE4_Q5_M02105 TRANSFAC + 38274775 38274786 5.0E-06 CTCCCTCCCCAG 12 V_AR_04_M01201 TRANSFAC + 38276775 38276789 8.0E-06 GGAACAATCTGTTCC 15 V_AR_04_M01201 TRANSFAC - 38276775 38276789 5.0E-06 GGAACAGATTGTTCC 15 V_GR_Q6_M00192 TRANSFAC + 38276773 38276791 1.0E-06 TAGGAACAATCTGTTCCTT 19 V_ZIC3_05_M02941 TRANSFAC + 38275821 38275835 0.0E+00 GAACACAGCAGGAAA 15 V_PNR_01_M01650 TRANSFAC - 38275737 38275750 3.0E-06 GGGGTCAGAGTTCA 14 V_NCX_02_M01420 TRANSFAC + 38274547 38274563 7.0E-06 GAAAAAGTTAATACTAT 17 V_HNF4A_Q6_01_M02016 TRANSFAC - 38275734 38275748 8.0E-06 GGTCAGAGTTCAAGG 15 V_HNF4_DR1_Q3_M00764 TRANSFAC + 38275737 38275749 4.0E-06 TGAACTCTGACCC 13 V_SRF_Q5_02_M01007 TRANSFAC - 38275686 38275704 6.0E-06 CTAGTCCCTATTTGGGGAG 19 V_STAT4_Q5_M02117 TRANSFAC - 38275935 38275944 4.0E-06 TTATGGGAAA 10 V_SOX11_03_M02795 TRANSFAC + 38276715 38276731 7.0E-06 TTAAGGACAATGGATGT 17 V_SOX9_B1_M00410 TRANSFAC + 38276716 38276729 6.0E-06 TAAGGACAATGGAT 14 V_MAF_Q6_01_M00983 TRANSFAC + 38275790 38275800 2.0E-06 TGTTGAGTCAA 11 V_NEUROD_02_M01288 TRANSFAC - 38275823 38275834 1.0E-06 TTCCTGCTGTGT 12 V_SP4_Q5_M01273 TRANSFAC - 38273986 38273996 2.0E-06 GCCCCGCCCCG 11 V_CAAT_01_M00254 TRANSFAC + 38274943 38274954 7.0E-06 TGCAGCCAATGA 12 V_ZIC2_05_M02940 TRANSFAC + 38275821 38275835 0.0E+00 GAACACAGCAGGAAA 15 V_ALPHACP1_01_M00687 TRANSFAC + 38274945 38274955 1.0E-05 CAGCCAATGAA 11 V_TTF1_Q5_M02034 TRANSFAC + 38276651 38276664 4.0E-06 AAACTCTTGAGAAA 14 V_CEBPA_01_M00116 TRANSFAC + 38275883 38275896 1.0E-06 ATATTGCAAAAAAC 14 V_DR1_Q3_M00762 TRANSFAC - 38275737 38275749 3.0E-06 GGGTCAGAGTTCA 13 V_HNF4_Q6_01_M01031 TRANSFAC - 38275736 38275749 1.0E-06 GGGTCAGAGTTCAA 14 V_PARP_Q3_M01211 TRANSFAC + 38275942 38275951 3.0E-06 TAAGAAAAAG 10 V_STAT1STAT1_Q3_M01212 TRANSFAC + 38275934 38275946 6.0E-06 TTTTCCCATAAGA 13 V_ZFP281_01_M01597 TRANSFAC - 38275748 38275758 1.0E-06 TGGGGGTGGGG 11 V_CEBPB_Q6_M01896 TRANSFAC - 38275884 38275893 4.0E-06 TTTTGCAATA 10 V_CEBPB_Q6_M01896 TRANSFAC - 38277077 38277086 9.0E-06 TGGTGCAATA 10 V_ZFP281_04_M02831 TRANSFAC + 38275746 38275760 7.0E-06 ACCCCCACCCCCACA 15 V_EFC_Q6_M00626 TRANSFAC + 38276696 38276709 7.0E-06 AATCACTCTGGAAA 14 V_SATB1_01_M01232 TRANSFAC - 38276731 38276742 6.0E-06 TATTTGTAATCA 12 V_PLAGL1_03_M02786 TRANSFAC + 38276913 38276928 6.0E-06 GAGGGGGCGCCCTGGG 16 V_SRY_05_M02917 TRANSFAC + 38276714 38276730 2.0E-06 TTTAAGGACAATGGATG 17 V_UF1H3BETA_Q6_M01068 TRANSFAC + 38274230 38274243 4.0E-06 GGCGGGGCTGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 38275747 38275760 5.0E-06 TGTGGGGGTGGGGG 14 V_RXRLXRB_01_M01198 TRANSFAC - 38275737 38275749 4.0E-06 GGGTCAGAGTTCA 13 V_HNF4_01_M00134 TRANSFAC - 38275734 38275752 3.0E-06 TGGGGGTCAGAGTTCAAGG 19 V_ZFP128_04_M02932 TRANSFAC - 38276733 38276746 4.0E-06 TTTATATTTGTAAT 14 V_SP1_Q4_01_M00932 TRANSFAC + 38273985 38273997 4.0E-06 ACGGGGCGGGGCG 13 V_CEBPE_01_M01772 TRANSFAC + 38276805 38276814 8.0E-06 ATTTTGTAAT 10 V_COUP_DR1_Q6_M00765 TRANSFAC + 38275737 38275749 2.0E-06 TGAACTCTGACCC 13 V_STAT1_Q6_M01823 TRANSFAC - 38275935 38275944 4.0E-06 TTATGGGAAA 10 V_CEBPG_Q6_01_M01869 TRANSFAC - 38276804 38276815 1.0E-06 CATTACAAAATG 12 V_STAT1_05_M01260 TRANSFAC - 38276043 38276064 3.0E-06 TTTTTACTGGAATTGAGGTTTA 22 V_AR_01_M00481 TRANSFAC + 38276775 38276789 2.0E-06 GGAACAATCTGTTCC 15 V_AR_01_M00481 TRANSFAC - 38276775 38276789 1.0E-06 GGAACAGATTGTTCC 15 V_PAX4_04_M00380 TRANSFAC + 38275872 38275901 1.0E-05 GGATAACAAGGATATTGCAAAAAACACCCC 30 V_SMAD1_01_M01590 TRANSFAC + 38276717 38276728 7.0E-06 AAGGACAATGGA 12 PPARG_RXRA_MA0065.2 JASPAR - 38275737 38275751 8.0E-06 GGGGGTCAGAGTTCA 15 V_ZIC1_05_M02939 TRANSFAC + 38275821 38275835 0.0E+00 GAACACAGCAGGAAA 15 V_CEBPA_Q6_M01866 TRANSFAC - 38275884 38275896 4.0E-06 GTTTTTTGCAATA 13 V_TR4_03_M01782 TRANSFAC - 38275737 38275749 3.0E-06 GGGTCAGAGTTCA 13 V_NANOG_02_M01247 TRANSFAC - 38274627 38274646 2.0E-06 GTTGGAACAGAAAGGAAAAA 20 V_OCT4_01_M01125 TRANSFAC + 38276806 38276820 6.0E-06 TTTTGTAATGGTGAA 15 V_PPARG_01_M00512 TRANSFAC - 38275733 38275753 2.0E-06 GTGGGGGTCAGAGTTCAAGGT 21

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.