Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ROGDI Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79641 rogdi homolog (Drosophila) chr16 - 4852451 - 4857951 4852951 Transcription Factor Binding Sites   Download all TFBS in the ROGDI promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 4853791 4853808 6.0E-06 TATGTAATTATATATAGG 18 TBX21_TBX_full_dimeric_16_1 SELEX + 4854967 4854982 1.0E-05 TGTGTGAACACACAGC 16 SRY_HMG_DBD_dimeric_13_2 SELEX - 4855537 4855549 8.0E-06 TGTATTTCATTCT 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 4855016 4855027 7.0E-06 AGCTTTCCCACA 12 TBP_MA0108.2 JASPAR + 4855117 4855131 2.0E-06 GTATAAAAGGAAATG 15 EWSR1-FLI1_MA0149.1 JASPAR + 4852329 4852346 6.0E-06 GGAAATGAGGAGGGAGGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 4854882 4854899 7.0E-06 GAAAAAAAGCCAGGCAGC 18 NFIL3_MA0025.1 JASPAR + 4852217 4852227 9.0E-06 TTATATAATGA 11 GATA5_GATA_DBD_monomeric_8_1 SELEX + 4854863 4854870 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 4854863 4854870 7.0E-06 AGATAAGA 8 SOX8_HMG_full_dimeric_13_1 SELEX - 4855538 4855550 8.0E-06 GTGTATTTCATTC 13 MEF2A_MA0052.1 JASPAR + 4853792 4853801 5.0E-06 CTATATATAA 10 MEF2A_MA0052.1 JASPAR - 4853792 4853801 4.0E-06 TTATATATAG 10 SOX2_HMG_full_dimeric_15_1 SELEX - 4855536 4855550 9.0E-06 GTGTATTTCATTCTC 15 SP1_MA0079.2 JASPAR + 4852711 4852720 7.0E-06 CCCCGCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 4850542 4850551 9.0E-06 ACCAGCTGCT 10 NFIX_NFI_full_monomeric_9_2 SELEX + 4852019 4852027 8.0E-06 TTTGCCAAT 9 SP4_C2H2_full_monomeric_17_1 SELEX - 4850482 4850498 6.0E-06 GTGACCCCGCCCCTCCT 17 SP4_C2H2_full_monomeric_17_1 SELEX + 4852673 4852689 8.0E-06 CTGGCTCCGCCCCCACC 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX + 4852996 4853012 9.0E-06 CAGGACAGTCTGTCCCC 17 NR3C2_nuclearreceptor_DBD_dimeric_17_1 SELEX - 4852996 4853012 6.0E-06 GGGGACAGACTGTCCTG 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 4852710 4852720 4.0E-06 ACCCCGCCCCC 11 GATA3_GATA_full_monomeric_8_1 SELEX + 4854863 4854870 7.0E-06 AGATAAGA 8 Evi1_MA0029.1 JASPAR + 4854862 4854875 1.0E-06 GAGATAAGACAAGC 14 Myf_MA0055.1 JASPAR - 4850541 4850552 6.0E-06 AACCAGCTGCTG 12 Myf_MA0055.1 JASPAR - 4852395 4852406 1.0E-06 AAGCAGCTGCAG 12 NR3C1_MA0113.1 JASPAR - 4852995 4853012 5.0E-06 GGGGACAGACTGTCCTGC 18 Zfp740_C2H2_DBD_monomeric_10_1 SELEX - 4850610 4850619 1.0E-05 GCCCCCCCAC 10 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 4855018 4855031 4.0E-06 CTTTCCCACACGCC 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 4855018 4855029 9.0E-06 CTTTCCCACACG 12 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX - 4852904 4852914 1.0E-05 CGCCCCAGGCT 11 RREB1_MA0073.1 JASPAR - 4850660 4850679 2.0E-06 CCACCACACACCCCATTTCT 20 Zfx_MA0146.1 JASPAR - 4850682 4850695 8.0E-06 GCGGCCAAGGCCTG 14 V_DBX1_01_M01483 TRANSFAC - 4853792 4853808 5.0E-06 TATGTAATTATATATAG 17 V_GEN_INI_B_M00315 TRANSFAC - 4852331 4852338 1.0E-05 CCTCATTT 8 V_FXR_Q3_M00631 TRANSFAC + 4852047 4852060 4.0E-06 GAGGTTCAGTGACT 14 V_EVI1_05_M00082 TRANSFAC + 4852949 4852959 1.0E-05 GGATATGATAG 11 V_GATA1_Q6_M02004 TRANSFAC + 4854858 4854872 2.0E-06 GTTTGAGATAAGACA 15 V_GATA2_02_M00348 TRANSFAC + 4854861 4854870 8.0E-06 TGAGATAAGA 10 V_ACAAT_B_M00309 TRANSFAC - 4852621 4852629 8.0E-06 GATTGGTGG 9 V_ERR3_Q2_01_M02094 TRANSFAC - 4852377 4852389 8.0E-06 CCTCAAGGTAACG 13 V_HOXA13_02_M01297 TRANSFAC - 4853220 4853228 1.0E-06 AAATAAAAC 9 V_HOXA13_02_M01297 TRANSFAC + 4855557 4855565 7.0E-06 ATATAAAAC 9 V_ZFP740_04_M02938 TRANSFAC - 4855517 4855533 9.0E-06 AAGATCCCCCGGGTACT 17 V_SP1_Q6_01_M00931 TRANSFAC + 4850486 4850495 7.0E-06 GGGGCGGGGT 10 V_SP1_Q6_01_M00931 TRANSFAC - 4852710 4852719 7.0E-06 GGGGCGGGGT 10 V_EGR_Q6_M00807 TRANSFAC - 4852678 4852688 7.0E-06 GTGGGGGCGGA 11 V_EVI1_02_M00079 TRANSFAC + 4854863 4854873 1.0E-06 AGATAAGACAA 11 V_AP2_Q6_01_M00915 TRANSFAC + 4852713 4852725 0.0E+00 CCGCCCCCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 4852711 4852720 7.0E-06 CCCCGCCCCC 10 V_GATA_C_M00203 TRANSFAC + 4854863 4854873 3.0E-06 AGATAAGACAA 11 V_NERF_Q2_M00531 TRANSFAC + 4853209 4853226 9.0E-06 TACCAAGAAGTGTTTTAT 18 V_SP1_02_M01303 TRANSFAC + 4850486 4850496 8.0E-06 GGGGCGGGGTC 11 V_SP1_02_M01303 TRANSFAC - 4852709 4852719 3.0E-06 GGGGCGGGGTG 11 V_AIRE_02_M01000 TRANSFAC - 4855416 4855440 3.0E-06 GATTCCTAACCGGACAGCCTGGGCT 25 V_PU1_Q4_M01172 TRANSFAC - 4850819 4850837 5.0E-06 CCTTTCCTCTTCCCCTTCC 19 V_PU1_Q4_M01172 TRANSFAC - 4855119 4855137 1.0E-06 TATCTCCATTTCCTTTTAT 19 V_AP4_Q6_01_M00927 TRANSFAC - 4850543 4850551 6.0E-06 ACCAGCTGC 9 V_NR3C1_01_M02219 TRANSFAC - 4852995 4853012 5.0E-06 GGGGACAGACTGTCCTGC 18 V_TCFAP2E_04_M02926 TRANSFAC - 4853226 4853239 1.0E-05 TACTGCAAGAAAAA 14 V_CDX_Q5_M00991 TRANSFAC - 4853222 4853239 0.0E+00 TACTGCAAGAAAAATAAA 18 V_TAL1_Q6_M00993 TRANSFAC - 4850891 4850900 3.0E-06 TCCATCTGTT 10 V_GC_01_M00255 TRANSFAC - 4852674 4852687 9.0E-06 TGGGGGCGGAGCCA 14 V_GC_01_M00255 TRANSFAC - 4852708 4852721 7.0E-06 TGGGGGCGGGGTGG 14 V_GEN_INI3_B_M00314 TRANSFAC - 4852331 4852338 1.0E-05 CCTCATTT 8 V_MYF_01_M01302 TRANSFAC - 4850541 4850552 6.0E-06 AACCAGCTGCTG 12 V_MYF_01_M01302 TRANSFAC - 4852395 4852406 1.0E-06 AAGCAGCTGCAG 12 V_OCT1_03_M00137 TRANSFAC + 4852218 4852230 6.0E-06 TATATAATGAGGT 13 V_ZFP410_03_M02832 TRANSFAC + 4855548 4855564 1.0E-06 CACTATGGGATATAAAA 17 V_SREBP1_01_M00220 TRANSFAC + 4854667 4854677 9.0E-06 CATCACCTGAG 11 V_TATA_01_M00252 TRANSFAC + 4855117 4855131 2.0E-06 GTATAAAAGGAAATG 15 V_KROX_Q6_M00982 TRANSFAC + 4852678 4852691 5.0E-06 TCCGCCCCCACCCG 14 V_OLF1_01_M00261 TRANSFAC + 4850179 4850200 3.0E-06 GGCAAGTCCCTGGAGGCTCTGG 22 V_SP1_Q6_M00196 TRANSFAC + 4850484 4850496 3.0E-06 GAGGGGCGGGGTC 13 V_SP1_Q6_M00196 TRANSFAC - 4852675 4852687 6.0E-06 TGGGGGCGGAGCC 13 V_SP1_Q6_M00196 TRANSFAC - 4852709 4852721 3.0E-06 TGGGGGCGGGGTG 13 V_SP1_Q6_M00196 TRANSFAC + 4852921 4852933 7.0E-06 TGGGGGCGGAGCT 13 V_EVI1_01_M00078 TRANSFAC + 4854863 4854878 7.0E-06 AGATAAGACAAGCTCG 16 V_SREBP_Q6_M01168 TRANSFAC - 4850591 4850605 5.0E-06 CAGCTCACCCCACTC 15 V_TATA_C_M00216 TRANSFAC + 4855116 4855125 6.0E-06 TGTATAAAAG 10 V_ISRE_01_M00258 TRANSFAC + 4853725 4853739 3.0E-06 CAGTTTCTAATCTCT 15 V_REST_01_M01256 TRANSFAC + 4852625 4852646 9.0E-06 CAATCTTTCTGTCCTCGGTCCT 22 V_AR_04_M01201 TRANSFAC - 4852997 4853011 8.0E-06 GGGACAGACTGTCCT 15 V_GRE_C_M00205 TRANSFAC - 4852996 4853011 1.0E-06 GGGACAGACTGTCCTG 16 V_KLF7_03_M02773 TRANSFAC - 4850483 4850498 7.0E-06 GTGACCCCGCCCCTCC 16 V_KLF7_03_M02773 TRANSFAC + 4853767 4853782 9.0E-06 AGGACCCCGCCCTAGT 16 V_HB24_01_M01399 TRANSFAC + 4853792 4853806 3.0E-06 CTATATATAATTACA 15 V_SMAD4_Q6_M00733 TRANSFAC + 4850237 4850251 6.0E-06 CTCATCCAGCCAGCT 15 V_SP3_Q3_M00665 TRANSFAC - 4853771 4853784 6.0E-06 ACACTAGGGCGGGG 14 V_SP1_01_M00008 TRANSFAC + 4850486 4850495 3.0E-06 GGGGCGGGGT 10 V_SP1_01_M00008 TRANSFAC - 4852710 4852719 3.0E-06 GGGGCGGGGT 10 V_TBP_06_M02814 TRANSFAC + 4853789 4853804 1.0E-06 ACCCTATATATAATTA 16 V_TBP_06_M02814 TRANSFAC + 4853791 4853806 3.0E-06 CCTATATATAATTACA 16 V_LMO2COM_01_M00277 TRANSFAC + 4852313 4852324 6.0E-06 CCCCAGGTGGAG 12 V_BLIMP1_Q6_M01066 TRANSFAC + 4852322 4852337 7.0E-06 GAGCCAGGGAAATGAG 16 V_NEUROD_02_M01288 TRANSFAC + 4855077 4855088 3.0E-06 GTGCTGCTGTGT 12 V_LRH1_Q5_M01142 TRANSFAC + 4855446 4855457 1.0E-05 TTGACCTTGCAT 12 V_POU6F1_02_M01462 TRANSFAC + 4852217 4852233 2.0E-06 TTATATAATGAGGTCGG 17 V_MAZR_01_M00491 TRANSFAC - 4855047 4855059 4.0E-06 TGGGGAGGGGACA 13 V_AP4_01_M00005 TRANSFAC - 4850537 4850554 2.0E-06 ACAACCAGCTGCTGCACT 18 V_TCFE2A_03_M02823 TRANSFAC - 4855303 4855319 6.0E-06 TTTTCCAGGTGTACAAA 17 V_DR1_Q3_M00762 TRANSFAC - 4855040 4855052 9.0E-06 GGGACAAGTGTCA 13 V_SIRT6_01_M01797 TRANSFAC + 4854863 4854870 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC + 4854861 4854870 5.0E-06 TGAGATAAGA 10 V_T3R_Q6_M00963 TRANSFAC + 4850456 4850464 7.0E-06 CCTGTCCTT 9 V_EBNA1_01_M01745 TRANSFAC - 4852994 4853009 7.0E-06 GACAGACTGTCCTGCC 16 V_GEN_INI2_B_M00313 TRANSFAC - 4852331 4852338 1.0E-05 CCTCATTT 8 V_TFIIA_Q6_M00707 TRANSFAC + 4853737 4853748 8.0E-06 TCTGAAAGGGGC 12 V_FPM315_01_M01587 TRANSFAC - 4853015 4853026 6.0E-06 TAGGGAGGAGGA 12 V_NRSF_01_M00256 TRANSFAC - 4855079 4855099 6.0E-06 ATCAGCACAGCACACAGCAGC 21 V_TBX15_02_M01264 TRANSFAC - 4854657 4854674 1.0E-06 AGGTGATGAGCTGAGAAA 18 V_RSRFC4_01_M00026 TRANSFAC + 4853789 4853804 7.0E-06 ACCCTATATATAATTA 16 V_ESRRA_03_M02748 TRANSFAC - 4855442 4855458 5.0E-06 CATGCAAGGTCAACACA 17 V_ZFP281_01_M01597 TRANSFAC - 4852711 4852721 6.0E-06 TGGGGGCGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 4854760 4854770 5.0E-06 TGGGGGATGGG 11 V_DMRT2_01_M01147 TRANSFAC + 4855555 4855570 9.0E-06 GGATATAAAACATTCA 16 V_ZFP281_04_M02831 TRANSFAC - 4854758 4854772 7.0E-06 TCCCCATCCCCCACT 15 V_GATA2_03_M00349 TRANSFAC + 4854861 4854870 3.0E-06 TGAGATAAGA 10 V_POU6F1_03_M01479 TRANSFAC + 4852217 4852233 8.0E-06 TTATATAATGAGGTCGG 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 4852329 4852346 6.0E-06 GGAAATGAGGAGGGAGGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 4854882 4854899 7.0E-06 GAAAAAAAGCCAGGCAGC 18 V_PLAGL1_03_M02786 TRANSFAC - 4852934 4852949 2.0E-06 CTGGGGGCGCCCCGGG 16 V_IRF1_01_M00062 TRANSFAC - 4853219 4853231 4.0E-06 GAAAAATAAAACA 13 V_SP1_Q2_01_M00933 TRANSFAC - 4850485 4850494 7.0E-06 CCCCGCCCCT 10 V_SP1_Q2_01_M00933 TRANSFAC + 4852711 4852720 4.0E-06 CCCCGCCCCC 10 V_GATA6_04_M02757 TRANSFAC - 4852003 4852019 9.0E-06 AAGGGAGATAACAGTAC 17 V_NFYA_Q5_M02106 TRANSFAC - 4852735 4852748 9.0E-06 CAGCCAATCGCGAG 14 V_NFYA_Q5_M02106 TRANSFAC - 4852981 4852994 9.0E-06 CGGCCAATGAGTGA 14 V_SP1_Q4_01_M00932 TRANSFAC + 4850484 4850496 5.0E-06 GAGGGGCGGGGTC 13 V_SP1_Q4_01_M00932 TRANSFAC - 4852709 4852721 9.0E-06 TGGGGGCGGGGTG 13 V_ATATA_B_M00311 TRANSFAC - 4852215 4852224 4.0E-06 TTATATAAGT 10 V_EVI1_03_M00080 TRANSFAC + 4854863 4854873 6.0E-06 AGATAAGACAA 11 V_PAX4_04_M00380 TRANSFAC - 4853202 4853231 1.0E-06 GAAAAATAAAACACTTCTTGGTAACACAGC 30

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.