Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

NDNF


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
79625 neuron-derived neurotrophic factor chr4 -121993173 - 121998673 121993673

Transcription Factor Binding Sites

 
Download all TFBS in the NDNF promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
POU4F2_POU_full_monomeric_16_1 SELEX - 121997784 121997799 8.0E-06 ATGCATTATTAGTCAT 16
FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 121993879 121993891 9.0E-06 ATACACATACACA 13
HINFP1_C2H2_full_dimeric_19_1 SELEX - 121993628 121993646 2.0E-06 GCGCACCCGCCACGGCCGC 19
Sox1_HMG_DBD_dimeric_14_1 SELEX + 121997785 121997798 4.0E-06 TGACTAATAATGCA 14
MYF6_bHLH_full_dimeric_10_1 SELEX + 121994364 121994373 9.0E-06 AGCAGCTGTT 10
IRF7_IRF_DBD_dimeric_14_1 SELEX + 121988814 121988827 1.0E-06 CCCAAAGTGAAAAA 14
PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 121997728 121997739 5.0E-06 TGACATATATCA 12
HSF1_HSF_full_trimeric_13_1 SELEX - 121992471 121992483 9.0E-06 TTATAGAAACTTC 13
RXRA_nuclearreceptor_full_dimeric_14_2 SELEX + 121992684 121992697 5.0E-06 GAGGGCATGAACCT 14
SRY_HMG_DBD_dimeric_16_1 SELEX + 121988751 121988766 1.0E-06 AAAAATTGGCATTGTA 16
SRY_HMG_DBD_dimeric_16_1 SELEX - 121988751 121988766 2.0E-06 TACAATGCCAATTTTT 16
EWSR1-FLI1_MA0149.1 JASPAR + 121991708 121991725 8.0E-06 GGAAGCGAGGCAGCAGGA 18
EWSR1-FLI1_MA0149.1 JASPAR - 121993805 121993822 5.0E-06 AGAAGGAGGGACGGAGGG 18
EWSR1-FLI1_MA0149.1 JASPAR - 121993809 121993826 7.0E-06 GGAGAGAAGGAGGGACGG 18
EWSR1-FLI1_MA0149.1 JASPAR - 121993813 121993830 1.0E-06 GGAGGGAGAGAAGGAGGG 18
EWSR1-FLI1_MA0149.1 JASPAR - 121993939 121993956 3.0E-06 GAAAGAGAGGGAGGGAGG 18
EWSR1-FLI1_MA0149.1 JASPAR + 121994062 121994079 7.0E-06 GGGGAGAATGAAGGAGGC 18
TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 121997728 121997739 7.0E-06 TGACATATATCA 12
TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 121997728 121997739 7.0E-06 TGATATATGTCA 12
Pax4_MA0068.1 JASPAR + 121991895 121991924 2.0E-06 GAAAAAACATAACAACAACAACAAAACCCA 30
Pax4_MA0068.1 JASPAR + 121991898 121991927 1.0E-06 AAAACATAACAACAACAACAAAACCCAGAC 30
TCF7L1_HMG_full_monomeric_12_1 SELEX + 121993352 121993363 1.0E-06 AAACTTCAAAGG 12
Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 121991596 121991606 9.0E-06 GGAAATAAATA 11
HNF1A_homeodomain_full_dimeric_15_1 SELEX + 121994976 121994990 4.0E-06 GGTCATTCATTAACA 15
HNF1A_homeodomain_full_dimeric_15_1 SELEX - 121994976 121994990 4.0E-06 TGTTAATGAATGACC 15
RXRG_nuclearreceptor_DBD_dimeric_14_2 SELEX + 121992684 121992697 5.0E-06 GAGGGCATGAACCT 14
Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 121994364 121994373 3.0E-06 AGCAGCTGTT 10
Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 121994364 121994373 1.0E-06 AACAGCTGCT 10
FOXI1_MA0042.1 JASPAR + 121991593 121991604 4.0E-06 TCCTATTTATTT 12
ZIC3_C2H2_full_monomeric_15_1 SELEX + 121993824 121993838 5.0E-06 TCCCTCCCGCTGCGC 15
NFIX_NFI_full_monomeric_9_2 SELEX - 121988755 121988763 8.0E-06 AATGCCAAT 9
Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 121994362 121994375 4.0E-06 AAAACAGCTGCTGA 14
SRY_MA0084.1 JASPAR + 121994373 121994381 5.0E-06 TTTAACAAT 9
NFATC1_NFAT_full_dimeric_20_1 SELEX - 121997765 121997784 1.0E-06 TTTGGAAAATACTTGTTCAT 20
BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 121988738 121988754 3.0E-06 TTTTTTCAAGGAACTCA 17
SOX9_HMG_full_dimeric_16_3 SELEX - 121997784 121997799 5.0E-06 ATGCATTATTAGTCAT 16
Tcf7_HMG_DBD_monomeric_12_1 SELEX + 121993352 121993363 1.0E-06 AAACTTCAAAGG 12
SOX7_HMG_full_dimeric_16_1 SELEX + 121988751 121988766 2.0E-06 AAAAATTGGCATTGTA 16
ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 121993886 121993900 2.0E-06 TACACACACTCACAC 15
POU1F1_POU_DBD_monomeric_17_1 SELEX - 121997786 121997802 3.0E-06 ATGATGCATTATTAGTC 17
HNF1B_homeodomain_full_dimeric_13_1 SELEX + 121994977 121994989 5.0E-06 GTCATTCATTAAC 13
HNF1B_homeodomain_full_dimeric_13_1 SELEX - 121994977 121994989 2.0E-06 GTTAATGAATGAC 13
TBX2_TBX_full_monomeric_11_1 SELEX + 121995308 121995318 7.0E-06 AAAGTGTCAAA 11
TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 121997728 121997739 6.0E-06 TGACATATATCA 12
TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 121997728 121997739 6.0E-06 TGATATATGTCA 12
Myf_MA0055.1 JASPAR + 121991715 121991726 9.0E-06 AGGCAGCAGGAG 12
Myf_MA0055.1 JASPAR - 121994363 121994374 1.0E-06 AAACAGCTGCTG 12
SOX21_HMG_DBD_dimeric_16_1 SELEX + 121988751 121988766 2.0E-06 AAAAATTGGCATTGTA 16
HNF1B_homeodomain_full_dimeric_15_1 SELEX + 121994976 121994990 3.0E-06 GGTCATTCATTAACA 15
HNF1B_homeodomain_full_dimeric_15_1 SELEX - 121994976 121994990 4.0E-06 TGTTAATGAATGACC 15
ELF5_MA0136.1 JASPAR - 121992468 121992476 9.0E-06 AACTTCCTT 9
FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 121991596 121991608 5.0E-06 ATGGAAATAAATA 13
MSC_bHLH_full_dimeric_10_1 SELEX - 121994364 121994373 4.0E-06 AACAGCTGCT 10
Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 121993879 121993891 9.0E-06 ATACACATACACA 13
TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 121997728 121997739 8.0E-06 TGACATATATCA 12
TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 121997728 121997739 1.0E-05 TGATATATGTCA 12
HNF1A_MA0046.1 JASPAR - 121994977 121994990 7.0E-06 TGTTAATGAATGAC 14
V_MEQ_01_M02049 TRANSFAC - 121993687 121993695 7.0E-06 AACACACAC 9
V_FOXP1_01_M00987 TRANSFAC - 121991905 121991924 9.0E-06 TGGGTTTTGTTGTTGTTGTT 20
V_FOXP1_01_M00987 TRANSFAC - 121994494 121994513 5.0E-06 TTTTTTTTCTTGGTTTTCCT 20
V_AP1_Q2_M00173 TRANSFAC + 121997783 121997793 7.0E-06 AATGACTAATA 11
V_E2A_Q6_01_M02088 TRANSFAC - 121994362 121994374 5.0E-06 AAACAGCTGCTGA 13
V_GEN_INI_B_M00315 TRANSFAC - 121992510 121992517 1.0E-05 CCTCATTT 8
V_POU3F3_01_M03090 TRANSFAC + 121997809 121997825 1.0E-05 AAATCACGCATAAGGAT 17
V_BCL6B_03_M02740 TRANSFAC - 121988738 121988753 9.0E-06 TTTTTCAAGGAACTCA 16
V_SOX30_03_M02804 TRANSFAC + 121994372 121994387 1.0E-06 TTTTAACAATTGAAAA 16
V_GATA3_03_M00351 TRANSFAC - 121994713 121994722 1.0E-06 AAAGATCATA 10
V_SPDEF_04_M02915 TRANSFAC - 121995246 121995261 6.0E-06 CACCACATCCTTGTTG 16
V_MAFB_03_M02879 TRANSFAC + 121988743 121988757 8.0E-06 TCCTTGAAAAAAATT 15
V_OCT1_Q5_01_M00930 TRANSFAC + 121991599 121991609 4.0E-06 TTATTTCCATT 11
V_OCTAMER_01_M01324 TRANSFAC + 121997809 121997825 1.0E-05 AAATCACGCATAAGGAT 17
V_SRY_02_M00160 TRANSFAC + 121994373 121994384 3.0E-06 TTTAACAATTGA 12
V_PLAG1_02_M01973 TRANSFAC - 121992002 121992017 9.0E-06 CCCCCTTCGGGGCGCT 16
V_GATA_C_M00203 TRANSFAC + 121990060 121990070 4.0E-06 TGATAAGTCCT 11
V_STAT6_01_M00494 TRANSFAC + 121991600 121991607 7.0E-06 TATTTCCA 8
V_NERF_Q2_M00531 TRANSFAC + 121991703 121991720 4.0E-06 GTTCAGGAAGCGAGGCAG 18
V_AFP1_Q6_M00616 TRANSFAC - 121991592 121991602 9.0E-06 ATAAATAGGAC 11
V_AP4_Q6_01_M00927 TRANSFAC - 121994365 121994373 1.0E-05 AACAGCTGC 9
V_GM497_04_M02864 TRANSFAC + 121993847 121993862 1.0E-05 GCACGCACACACACAC 16
V_GM497_04_M02864 TRANSFAC + 121993865 121993880 4.0E-06 ACACACACACACTCAT 16
V_GM497_04_M02864 TRANSFAC + 121993883 121993898 7.0E-06 ACATACACACACTCAC 16
V_NFAT2_01_M01748 TRANSFAC - 121991600 121991608 6.0E-06 ATGGAAATA 9
V_BRN2_01_M00145 TRANSFAC - 121991597 121991612 6.0E-06 ATCAATGGAAATAAAT 16
V_TCFAP2E_04_M02926 TRANSFAC + 121988743 121988756 1.0E-06 TCCTTGAAAAAAAT 14
V_TCFAP2E_04_M02926 TRANSFAC + 121994500 121994513 1.0E-06 ACCAAGAAAAAAAA 14
V_HELIOSA_01_M01003 TRANSFAC - 121988810 121988820 6.0E-06 CTTTGGGATAA 11
V_NKX62_Q2_M00489 TRANSFAC - 121991594 121991605 1.0E-06 GAAATAAATAGG 12
V_REX1_01_M01695 TRANSFAC + 121994427 121994436 1.0E-05 GAAGCCATTA 10
V_HNF1_C_M00206 TRANSFAC - 121994974 121994990 0.0E+00 TGTTAATGAATGACCCA 17
V_HNF1_C_M00206 TRANSFAC + 121994976 121994992 1.0E-06 GGTCATTCATTAACAAA 17
V_SOX7_03_M02807 TRANSFAC + 121994369 121994390 3.0E-06 CTGTTTTAACAATTGAAAAAGC 22
V_GEN_INI3_B_M00314 TRANSFAC - 121992510 121992517 1.0E-05 CCTCATTT 8
V_HELIOSA_02_M01004 TRANSFAC - 121997775 121997785 4.0E-06 ATTTGGAAAAT 11
V_MYF_01_M01302 TRANSFAC + 121991715 121991726 9.0E-06 AGGCAGCAGGAG 12
V_MYF_01_M01302 TRANSFAC - 121994363 121994374 1.0E-06 AAACAGCTGCTG 12
V_GFI1_01_M00250 TRANSFAC - 121995026 121995049 1.0E-06 CACCTCTAAATCTCAGCACATAAG 24
V_GATA3_05_M02859 TRANSFAC - 121994946 121994967 1.0E-06 TGCTCTAGATCGTATCTCCTAA 22
V_HNF1_Q6_M00790 TRANSFAC - 121994974 121994991 5.0E-06 TTGTTAATGAATGACCCA 18
V_SOX8_04_M02912 TRANSFAC - 121997695 121997708 8.0E-06 ACATTCATTTAAAT 14
V_SP4_03_M02810 TRANSFAC - 121991566 121991582 5.0E-06 TTCTCCGCCCCCTTCAA 17
V_IRX4_01_M01410 TRANSFAC - 121991554 121991570 9.0E-06 TTCAAACAAGTAAAATC 17
V_AP1_Q4_M00188 TRANSFAC + 121997783 121997793 1.0E-05 AATGACTAATA 11
V_FOXK1_04_M02856 TRANSFAC + 121991906 121991920 0.0E+00 ACAACAACAACAAAA 15
V_FOXK1_04_M02856 TRANSFAC + 121991909 121991923 9.0E-06 ACAACAACAAAACCC 15
V_MAZ_Q6_01_M02023 TRANSFAC + 121991651 121991664 1.0E-06 GGAGGAGGAGAGGA 14
V_MAZ_Q6_01_M02023 TRANSFAC - 121993778 121993791 9.0E-06 AGAGGAGGGAGGGG 14
V_OCT1_05_M00161 TRANSFAC - 121990056 121990069 7.0E-06 GGACTTATCATTTT 14
V_IRF_Q6_M00772 TRANSFAC + 121991933 121991947 8.0E-06 CTCAGGTTCATTTCC 15
V_SOX18_03_M02801 TRANSFAC - 121994370 121994385 0.0E+00 TTCAATTGTTAAAACA 16
V_ASCL2_03_M02737 TRANSFAC - 121994360 121994376 8.0E-06 TAAAACAGCTGCTGAGT 17
V_IRF3_06_M02871 TRANSFAC + 121991577 121991590 3.0E-06 GGAGAATGGAGCGG 14
V_IK2_01_M00087 TRANSFAC - 121988809 121988820 6.0E-06 CTTTGGGATAAA 12
V_HBP1_03_M02762 TRANSFAC + 121997694 121997709 9.0E-06 CATTTAAATGAATGTG 16
V_SP1SP3_Q4_M01219 TRANSFAC - 121991568 121991578 4.0E-06 CCGCCCCCTTC 11
V_SP1SP3_Q4_M01219 TRANSFAC + 121993774 121993784 1.0E-06 CCGCCCCCTCC 11
V_ATF1_04_M02842 TRANSFAC + 121997782 121997795 8.0E-06 AAATGACTAATAAT 14
V_PAX8_B_M00328 TRANSFAC - 121997808 121997825 1.0E-05 ATCCTTATGCGTGATTTT 18
V_SOX17_04_M02904 TRANSFAC - 121997696 121997712 0.0E+00 AACCACATTCATTTAAA 17
V_TFIII_Q6_M00706 TRANSFAC - 121993943 121993951 6.0E-06 AGAGGGAGG 9
V_SOX15_03_M02799 TRANSFAC + 121994371 121994387 2.0E-06 GTTTTAACAATTGAAAA 17
V_MTF1_06_M02882 TRANSFAC + 121994499 121994512 7.0E-06 AACCAAGAAAAAAA 14
V_TAL1_01_M01591 TRANSFAC + 121993814 121993826 1.0E-06 CCTCCTTCTCTCC 13
V_TAL1_01_M01591 TRANSFAC + 121993915 121993927 1.0E-06 CCTCCTTTTCTCT 13
V_HNF1_01_M00132 TRANSFAC - 121994976 121994990 3.0E-06 TGTTAATGAATGACC 15
V_GFI1B_01_M01058 TRANSFAC - 121995032 121995043 8.0E-06 TAAATCTCAGCA 12
V_GEN_INI2_B_M00313 TRANSFAC - 121992510 121992517 1.0E-05 CCTCATTT 8
V_GATA6_01_M00462 TRANSFAC + 121990058 121990067 2.0E-06 AATGATAAGT 10
V_SMAD3_03_M02794 TRANSFAC + 121991917 121991933 3.0E-06 AAAACCCAGACATACAC 17
V_FPM315_01_M01587 TRANSFAC + 121991648 121991659 2.0E-06 GTGGGAGGAGGA 12
V_TCF4_Q5_M00671 TRANSFAC - 121993356 121993363 1.0E-05 CCTTTGAA 8
V_BBX_03_M02739 TRANSFAC + 121997694 121997708 7.0E-06 CATTTAAATGAATGT 15
V_BBX_03_M02739 TRANSFAC - 121997694 121997708 4.0E-06 ACATTCATTTAAATG 15
V_BBX_03_M02739 TRANSFAC + 121997758 121997772 6.0E-06 TAGCTCAATGAACAA 15
V_LEF1TCF1_Q4_M00978 TRANSFAC - 121993353 121993363 1.0E-06 CCTTTGAAGTT 11
V_SOX8_03_M02808 TRANSFAC - 121994371 121994387 2.0E-06 TTTTCAATTGTTAAAAC 17
V_DMRT2_01_M01147 TRANSFAC + 121997817 121997832 3.0E-06 CATAAGGATCCATTCA 16
V_ZFP281_04_M02831 TRANSFAC - 121995261 121995275 5.0E-06 TGCCCTCCCCCCTCC 15
V_SRF_06_M02916 TRANSFAC + 121994501 121994517 0.0E+00 CCAAGAAAAAAAAAGTA 17
V_SRF_06_M02916 TRANSFAC + 121994502 121994518 1.0E-06 CAAGAAAAAAAAAGTAC 17
V_HSF2_02_M01244 TRANSFAC + 121992471 121992483 5.0E-06 GAAGTTTCTATAA 13
V_EWSR1FLI1_01_M02252 TRANSFAC + 121991708 121991725 8.0E-06 GGAAGCGAGGCAGCAGGA 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 121993805 121993822 5.0E-06 AGAAGGAGGGACGGAGGG 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 121993809 121993826 7.0E-06 GGAGAGAAGGAGGGACGG 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 121993813 121993830 1.0E-06 GGAGGGAGAGAAGGAGGG 18
V_EWSR1FLI1_01_M02252 TRANSFAC - 121993939 121993956 3.0E-06 GAAAGAGAGGGAGGGAGG 18
V_EWSR1FLI1_01_M02252 TRANSFAC + 121994062 121994079 7.0E-06 GGGGAGAATGAAGGAGGC 18
V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 121997706 121997713 1.0E-05 TGTGGTTT 8
V_SOX1_03_M02802 TRANSFAC + 121994375 121994390 6.0E-06 TAACAATTGAAAAAGC 16
V_SOX12_03_M02796 TRANSFAC - 121994370 121994383 8.0E-06 CAATTGTTAAAACA 14
V_PIT1_Q6_M00802 TRANSFAC + 121997793 121997810 9.0E-06 AATGCATCATGATCTAAA 18
V_FREAC4_01_M00292 TRANSFAC + 121997731 121997746 6.0E-06 CATATATCAACATTTG 16
V_UF1H3BETA_Q6_M01068 TRANSFAC + 121992528 121992541 5.0E-06 GTTGGGGGTCGGGC 14
V_ELF5_04_M02241 TRANSFAC - 121992468 121992476 9.0E-06 AACTTCCTT 9
V_CP2_01_M00072 TRANSFAC + 121994102 121994112 6.0E-06 GCAAAACCCAG 11
V_CMAF_01_M01070 TRANSFAC + 121995027 121995045 4.0E-06 TTATGTGCTGAGATTTAGA 19
V_P300_01_M00033 TRANSFAC + 121993680 121993693 9.0E-06 GTGGGGAGTGTGTG 14
V_HOXD10_01_M01375 TRANSFAC - 121997691 121997707 8.0E-06 CATTCATTTAAATGATC 17
V_HNF1A_01_M02162 TRANSFAC - 121994977 121994990 7.0E-06 TGTTAATGAATGAC 14
V_TCF3_05_M02920 TRANSFAC + 121994499 121994513 4.0E-06 AACCAAGAAAAAAAA 15
V_PAX4_04_M00380 TRANSFAC - 121994696 121994725 3.0E-06 AAAAAAGATCATAGTTCTTAATATGACCGG 30
V_NF1_Q6_M00193 TRANSFAC + 121992718 121992735 6.0E-06 TCTTGGCAGGCGGGCAAA 18
V_TCF11_01_M00285 TRANSFAC + 121994977 121994989 6.0E-06 GTCATTCATTAAC 13
V_HSF1_Q6_01_M02017 TRANSFAC + 121992471 121992484 3.0E-06 GAAGTTTCTATAAC 14
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL