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SNRNP25 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79622 small nuclear ribonucleoprotein 25kDa (U11/U12) chr16 + 98828 - 104328 103828 Transcription Factor Binding Sites   Download all TFBS in the SNRNP25 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 104273 104289 3.0E-06 ACATTAAAATGTCATTT 17 RARA_nuclearreceptor_full_dimeric_18_1 SELEX - 104266 104283 7.0E-06 AAATGTCATTTGATGTCA 18 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX - 104276 104286 6.0E-06 TTAAAATGTCA 11 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 101028 101040 7.0E-06 ATGATTCAATTAC 13 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 101028 101040 7.0E-06 GTAATTGAATCAT 13 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 104289 104300 5.0E-06 TAATTGTATTTA 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 104289 104300 3.0E-06 TAAATACAATTA 12 MAX_bHLH_DBD_dimeric_10_1 SELEX - 103502 103511 1.0E-05 AACACGTGCC 10 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 101028 101040 7.0E-06 ATGATTCAATTAC 13 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 104283 104295 6.0E-06 TTAATGTAATTGT 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 104283 104295 2.0E-06 ACAATTACATTAA 13 PROP1_homeodomain_full_dimeric_11_1 SELEX - 104289 104299 8.0E-06 AAATACAATTA 11 ALX3_homeodomain_full_dimeric_13_1 SELEX + 101028 101040 6.0E-06 ATGATTCAATTAC 13 MNT_bHLH_DBD_dimeric_10_1 SELEX - 103502 103511 4.0E-06 AACACGTGCC 10 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 104276 104291 3.0E-06 TGACATTTTAATGTAA 16 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX - 104276 104291 6.0E-06 TTACATTAAAATGTCA 16 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 101028 101040 6.0E-06 ATGATTCAATTAC 13 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 101028 101040 1.0E-05 GTAATTGAATCAT 13 znf143_MA0088.1 JASPAR + 101020 101039 3.0E-06 CCGCTCCCATGATTCAATTA 20 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 101029 101039 2.0E-06 TGATTCAATTA 11 PHOX2B_homeodomain_full_dimeric_11_1 SELEX + 104284 104294 9.0E-06 TAATGTAATTG 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 101028 101040 4.0E-06 ATGATTCAATTAC 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 101028 101040 7.0E-06 GTAATTGAATCAT 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 104283 104295 8.0E-06 ACAATTACATTAA 13 SOX14_HMG_DBD_dimeric_12_1 SELEX - 104284 104295 3.0E-06 ACAATTACATTA 12 ZNF143_C2H2_DBD_monomeric_16_1 SELEX + 101023 101038 6.0E-06 CTCCCATGATTCAATT 16 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 101029 101039 3.0E-06 TGATTCAATTA 11 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 101029 101039 8.0E-06 TAATTGAATCA 11 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 104284 104294 8.0E-06 TAATGTAATTG 11 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 101028 101040 4.0E-06 ATGATTCAATTAC 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 104283 104295 5.0E-06 TTAATGTAATTGT 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 104288 104300 9.0E-06 TAAATACAATTAC 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 101028 101040 2.0E-06 ATGATTCAATTAC 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 101028 101040 4.0E-06 GTAATTGAATCAT 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 104283 104295 4.0E-06 TTAATGTAATTGT 13 DUXA_homeodomain_DBD_dimeric_13_1 SELEX - 101028 101040 4.0E-06 GTAATTGAATCAT 13 Pou5f1_MA0142.1 JASPAR + 104279 104293 9.0E-06 CATTTTAATGTAATT 15 SRY_HMG_DBD_dimeric_13_1 SELEX - 104283 104295 6.0E-06 ACAATTACATTAA 13 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 101029 101039 2.0E-06 TGATTCAATTA 11 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX + 104284 104294 8.0E-06 TAATGTAATTG 11 PLAG1_MA0163.1 JASPAR - 101042 101055 7.0E-06 GGGGCCCAGTGGGA 14 NRF1_NRF_full_dimeric_12_1 SELEX - 103836 103847 5.0E-06 CGCGCACGCGCA 12 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 104280 104291 7.0E-06 TTACATTAAAAT 12 V_BACH2_01_M00490 TRANSFAC + 107978 107988 8.0E-06 GGTGAGTCAGC 11 V_NFY_Q6_M00185 TRANSFAC - 103757 103767 4.0E-06 TGACCAATGAC 11 V_MTF1_Q4_M00650 TRANSFAC + 103183 103196 4.0E-06 TCTGCGCACAGCAC 14 V_LRH1_Q5_01_M02098 TRANSFAC - 104198 104208 4.0E-06 GGTCAAGGTTA 11 V_POU5F1_02_M02245 TRANSFAC + 104279 104293 9.0E-06 CATTTTAATGTAATT 15 V_PROP1_01_M01294 TRANSFAC + 104289 104299 2.0E-06 TAATTGTATTT 11 V_IRF_Q6_01_M00972 TRANSFAC + 107931 107941 4.0E-06 GGAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 107929 107944 3.0E-06 TGGGAAGTGAAAGAGC 16 V_AP2_Q6_01_M00915 TRANSFAC - 104218 104230 9.0E-06 CGCGCCCCAGGCG 13 V_DLX2_01_M01468 TRANSFAC - 104283 104298 1.0E-06 AATACAATTACATTAA 16 V_NERF_Q2_M00531 TRANSFAC - 107959 107976 9.0E-06 GGGCAGGAACTGAGTGTC 18 V_AIRE_02_M01000 TRANSFAC + 104279 104303 1.0E-05 CATTTTAATGTAATTGTATTTAGGG 25 V_PU1_Q4_M01172 TRANSFAC - 104236 104254 2.0E-06 GGTTTTTGGTTCCTCTTTA 19 V_EVX1_01_M01475 TRANSFAC + 104250 104266 9.0E-06 AAACCTCATTAGTGAGT 17 V_NFY_Q6_01_M00775 TRANSFAC - 103758 103770 9.0E-06 CAGTGACCAATGA 13 V_SOX21_03_M02803 TRANSFAC + 104281 104296 7.0E-06 TTTTAATGTAATTGTA 16 V_SOX21_03_M02803 TRANSFAC - 104281 104296 6.0E-06 TACAATTACATTAAAA 16 V_RPC155_01_M01798 TRANSFAC - 103587 103602 1.0E-06 TGCGGAGTTCGAGACC 16 V_EVX2_01_M01386 TRANSFAC - 104250 104266 6.0E-06 ACTCACTAATGAGGTTT 17 V_SOX7_03_M02807 TRANSFAC - 104282 104303 3.0E-06 CCCTAAATACAATTACATTAAA 22 V_NKX61_01_M00424 TRANSFAC + 104280 104292 3.0E-06 ATTTTAATGTAAT 13 V_NKX61_01_M00424 TRANSFAC + 104285 104297 7.0E-06 AATGTAATTGTAT 13 V_IRF_Q6_M00772 TRANSFAC - 107931 107945 6.0E-06 GGCTCTTTCACTTCC 15 V_LHX2_01_M01325 TRANSFAC + 104250 104266 9.0E-06 AAACCTCATTAGTGAGT 17 V_HMX1_01_M00433 TRANSFAC - 103748 103757 5.0E-06 CAAGTGCGAG 10 V_ZBTB7B_03_M02826 TRANSFAC - 104294 104308 6.0E-06 GAGCCCCCTAAATAC 15 V_HOX13_01_M00023 TRANSFAC + 104244 104273 4.0E-06 AACCAAAAACCTCATTAGTGAGTGACATCA 30 V_NFE4_Q5_M02105 TRANSFAC - 103096 103107 9.0E-06 CTCCCTCCCCTG 12 V_ERR1_Q3_M01841 TRANSFAC + 104273 104287 8.0E-06 AAATGACATTTTAAT 15 V_PBX1_05_M01967 TRANSFAC + 104260 104273 1.0E-06 AGTGAGTGACATCA 14 V_STAF_02_M00264 TRANSFAC + 101021 101041 8.0E-06 CGCTCCCATGATTCAATTACC 21 V_AP1_01_M00517 TRANSFAC + 107977 107989 2.0E-06 GGGTGAGTCAGCC 13 V_SOX11_03_M02795 TRANSFAC + 108027 108043 4.0E-06 CCAGAAACAAAGAAGGA 17 V_EMX2_01_M01461 TRANSFAC + 104250 104266 6.0E-06 AAACCTCATTAGTGAGT 17 V_PAX8_B_M00328 TRANSFAC + 104255 104272 7.0E-06 TCATTAGTGAGTGACATC 18 V_SF1_Q6_01_M01132 TRANSFAC + 104198 104206 9.0E-06 TAACCTTGA 9 V_ELF1_Q6_M00746 TRANSFAC + 103941 103952 7.0E-06 GCAAGAGGAAGA 12 V_CAAT_01_M00254 TRANSFAC - 103758 103769 9.0E-06 AGTGACCAATGA 12 V_POU6F1_02_M01462 TRANSFAC - 104249 104265 4.0E-06 CTCACTAATGAGGTTTT 17 V_GABPBETA_Q3_M01876 TRANSFAC + 103058 103068 7.0E-06 ACAGGAAGGGC 11 V_CAAT_C_M00200 TRANSFAC + 103697 103721 2.0E-06 ACCAACCAATAGACAGGGCGATTCT 25 V_ZFP206_01_M01742 TRANSFAC + 103836 103846 7.0E-06 TGCGCGTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 103837 103847 9.0E-06 CGCGCACGCGC 11 V_BDP1_01_M01796 TRANSFAC + 103587 103598 2.0E-06 GGTCTCGAACTC 12 V_NRSF_01_M00256 TRANSFAC - 104007 104027 2.0E-06 TGCACCACCATAGCCAGACCC 21 V_STAT6_02_M00500 TRANSFAC - 103219 103226 1.0E-05 GATTTCCT 8 V_ZFP281_01_M01597 TRANSFAC - 103777 103787 4.0E-06 GGGGGGTGGGG 11 V_IRF1_Q6_01_M01881 TRANSFAC - 107930 107943 6.0E-06 CTCTTTCACTTCCC 14 V_ZFP281_04_M02831 TRANSFAC + 103775 103789 9.0E-06 CGCCCCACCCCCCCC 15 V_ZFP281_04_M02831 TRANSFAC + 103776 103790 7.0E-06 GCCCCACCCCCCCCG 15 V_POU6F1_03_M01479 TRANSFAC - 104249 104265 5.0E-06 CTCACTAATGAGGTTTT 17 V_HOXB3_01_M01330 TRANSFAC + 104250 104266 0.0E+00 AAACCTCATTAGTGAGT 17 V_MOX1_01_M01443 TRANSFAC - 101028 101043 4.0E-06 GAGGTAATTGAATCAT 16 V_MOX1_01_M01443 TRANSFAC - 104283 104298 4.0E-06 AATACAATTACATTAA 16 V_BSX_01_M01442 TRANSFAC - 101028 101043 1.0E-06 GAGGTAATTGAATCAT 16 V_BSX_01_M01442 TRANSFAC - 104283 104298 9.0E-06 AATACAATTACATTAA 16 V_SOX15_04_M02903 TRANSFAC + 104271 104285 4.0E-06 TCAAATGACATTTTA 15 V_SOX15_04_M02903 TRANSFAC - 104271 104285 0.0E+00 TAAAATGTCATTTGA 15 V_SOX15_04_M02903 TRANSFAC + 104282 104296 1.0E-06 TTTAATGTAATTGTA 15 V_HOXD3_01_M01338 TRANSFAC + 101028 101043 8.0E-06 ATGATTCAATTACCTC 16 V_UF1H3BETA_Q6_M01068 TRANSFAC - 103776 103789 2.0E-06 GGGGGGGGTGGGGC 14 V_BRN3C_01_M01408 TRANSFAC - 104251 104266 7.0E-06 ACTCACTAATGAGGTT 16 V_HOXD10_01_M01375 TRANSFAC - 104276 104292 4.0E-06 ATTACATTAAAATGTCA 17 V_SOX14_03_M02798 TRANSFAC - 104281 104296 5.0E-06 TACAATTACATTAAAA 16 V_HOXC8_01_M01321 TRANSFAC + 104283 104298 1.0E-05 TTAATGTAATTGTATT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.