Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HMGN5 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79366 high mobility group nucleosome binding domain 5 chrX - 80456941 - 80462441 80457441 Transcription Factor Binding Sites   Download all TFBS in the HMGN5 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX - 80457460 80457474 5.0E-06 ATCAATTCTATTTTT 15 POU3F3_POU_DBD_monomeric_12_1 SELEX + 80457266 80457277 3.0E-06 TTGCATATATTT 12 POU3F2_POU_DBD_monomeric_13_1 SELEX + 80457265 80457277 1.0E-06 TTTGCATATATTT 13 POU5F1P1_POU_DBD_monomeric_9_1 SELEX - 80457264 80457272 2.0E-06 TATGCAAAT 9 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 80457773 80457784 4.0E-06 TGTTTTCCTACA 12 POU3F4_POU_DBD_monomeric_11_1 SELEX + 80457267 80457277 7.0E-06 TGCATATATTT 11 POU2F3_POU_DBD_monomeric_9_1 SELEX - 80457264 80457272 2.0E-06 TATGCAAAT 9 SOX8_HMG_full_dimeric_17_1 SELEX - 80457459 80457475 9.0E-06 CATCAATTCTATTTTTT 17 POU1F1_POU_DBD_monomeric_14_1 SELEX - 80457261 80457274 0.0E+00 TATATGCAAATAAG 14 POU2F2_POU_DBD_monomeric_11_1 SELEX - 80457263 80457273 0.0E+00 ATATGCAAATA 11 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 80457334 80457346 5.0E-06 CTAATCTAATTCA 13 POU3F4_POU_DBD_monomeric_9_1 SELEX - 80457264 80457272 2.0E-06 TATGCAAAT 9 Pou2f2_POU_DBD_monomeric_9_1 SELEX - 80457264 80457272 2.0E-06 TATGCAAAT 9 SPIB_ETS_DBD_monomeric_14_1 SELEX + 80457814 80457827 1.0E-06 AAAATGCAGAAGTT 14 POU3F3_POU_DBD_monomeric_13_1 SELEX - 80456729 80456741 8.0E-06 ATTATGTTAAATG 13 POU3F3_POU_DBD_monomeric_13_1 SELEX - 80457262 80457274 0.0E+00 TATATGCAAATAA 13 ONECUT1_CUT_full_monomeric_14_1 SELEX + 80457405 80457418 2.0E-06 CAAAAATCAATGTT 14 ALX3_homeodomain_full_dimeric_13_1 SELEX + 80457334 80457346 9.0E-06 CTAATCTAATTCA 13 ALX3_homeodomain_full_dimeric_13_1 SELEX + 80457339 80457351 9.0E-06 CTAATTCAATTCA 13 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 80457405 80457418 2.0E-06 CAAAAATCAATGTT 14 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 80457334 80457346 8.0E-06 CTAATCTAATTCA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 80457717 80457730 6.0E-06 AGGAAGATGCAATA 14 SOX9_HMG_full_dimeric_16_3 SELEX - 80458625 80458640 1.0E-06 ATGGATATACACTCAT 16 SOX7_HMG_full_dimeric_17_1 SELEX - 80457459 80457475 6.0E-06 CATCAATTCTATTTTTT 17 PRRX1_homeodomain_full_dimeric_11_1 SELEX + 80457335 80457345 9.0E-06 TAATCTAATTC 11 POU3F1_POU_DBD_monomeric_12_1 SELEX - 80457262 80457273 0.0E+00 ATATGCAAATAA 12 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 80457334 80457346 7.0E-06 CTAATCTAATTCA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX + 80457339 80457351 8.0E-06 CTAATTCAATTCA 13 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 80457339 80457351 4.0E-06 TGAATTGAATTAG 13 Pou5f1_MA0142.1 JASPAR + 80457810 80457824 3.0E-06 CATTAAAATGCAGAA 15 POU2F1_POU_DBD_monomeric_12_1 SELEX - 80456730 80456741 4.0E-06 ATTATGTTAAAT 12 POU2F1_POU_DBD_monomeric_12_1 SELEX - 80457263 80457274 0.0E+00 TATATGCAAATA 12 SPI1_ETS_full_monomeric_14_1 SELEX - 80457350 80457363 7.0E-06 AAAAAGGAGAACTG 14 SPI1_ETS_full_monomeric_14_1 SELEX + 80457814 80457827 1.0E-06 AAAATGCAGAAGTT 14 Sox3_HMG_DBD_dimeric_17_1 SELEX + 80457459 80457475 3.0E-06 AAAAAATAGAATTGATG 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 80457459 80457475 3.0E-06 CATCAATTCTATTTTTT 17 POU3F2_POU_DBD_monomeric_12_1 SELEX - 80457262 80457273 0.0E+00 ATATGCAAATAA 12 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 80457405 80457418 1.0E-06 CAAAAATCAATGTT 14 V_FOXP1_01_M00987 TRANSFAC - 80457454 80457473 5.0E-06 TCAATTCTATTTTTTTTTAA 20 V_CEBPG_Q6_M00622 TRANSFAC + 80456727 80456739 9.0E-06 TTCATTTAACATA 13 V_CEBPG_Q6_M00622 TRANSFAC + 80457450 80457462 3.0E-06 CCTATTAAAAAAA 13 V_HNF3B_01_M00131 TRANSFAC - 80457407 80457421 9.0E-06 TGAAACATTGATTTT 15 V_TCF3_01_M01594 TRANSFAC + 80457766 80457778 1.0E-06 CCTTTGTTGTTTT 13 V_POU3F3_01_M03090 TRANSFAC - 80457260 80457276 2.0E-06 AATATATGCAAATAAGA 17 V_POU3F3_01_M03090 TRANSFAC + 80457261 80457277 9.0E-06 CTTATTTGCATATATTT 17 V_POU3F3_01_M03090 TRANSFAC - 80457811 80457827 8.0E-06 AACTTCTGCATTTTAAT 17 V_HSF1_Q6_M01023 TRANSFAC + 80457828 80457844 2.0E-06 CCTCTGGCAGCTTCTCC 17 V_HMGIY_Q3_M01010 TRANSFAC - 80457166 80457180 5.0E-06 TAGTGATTTTTCTGA 15 V_HMGIY_Q3_M01010 TRANSFAC - 80457457 80457471 0.0E+00 AATTCTATTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 80457452 80457466 3.0E-06 TATTAAAAAAAAATA 15 V_BCL6_01_M01183 TRANSFAC + 80457262 80457277 6.0E-06 TTATTTGCATATATTT 16 V_BCL6_01_M01183 TRANSFAC - 80457456 80457471 8.0E-06 AATTCTATTTTTTTTT 16 V_FOXO4_02_M00476 TRANSFAC + 80457769 80457782 2.0E-06 TTGTTGTTTTCCTA 14 V_POU5F1_02_M02245 TRANSFAC + 80457810 80457824 3.0E-06 CATTAAAATGCAGAA 15 V_CBF_02_M01080 TRANSFAC + 80458263 80458278 8.0E-06 AAGAAAGTGGTTAACT 16 V_PROP1_01_M01294 TRANSFAC + 80457340 80457350 6.0E-06 TAATTCAATTC 11 V_OCT1_Q5_01_M00930 TRANSFAC + 80457262 80457272 0.0E+00 TTATTTGCATA 11 V_MEF2_02_M00231 TRANSFAC + 80457451 80457472 9.0E-06 CTATTAAAAAAAAATAGAATTG 22 V_OCTAMER_01_M01324 TRANSFAC - 80457260 80457276 2.0E-06 AATATATGCAAATAAGA 17 V_OCTAMER_01_M01324 TRANSFAC + 80457261 80457277 9.0E-06 CTTATTTGCATATATTT 17 V_OCTAMER_01_M01324 TRANSFAC - 80457811 80457827 8.0E-06 AACTTCTGCATTTTAAT 17 V_OCT1_01_M00135 TRANSFAC - 80457259 80457277 0.0E+00 AAATATATGCAAATAAGAA 19 V_POU2F3_01_M01476 TRANSFAC - 80457260 80457275 0.0E+00 ATATATGCAAATAAGA 16 V_POU2F3_01_M01476 TRANSFAC + 80457327 80457342 6.0E-06 CTTCATGCTAATCTAA 16 V_POU3F2_02_M00464 TRANSFAC - 80456731 80456740 9.0E-06 TTATGTTAAA 10 V_OCT_C_M00210 TRANSFAC + 80457261 80457273 0.0E+00 CTTATTTGCATAT 13 V_AIRE_02_M01000 TRANSFAC + 80457257 80457281 1.0E-06 TCTTCTTATTTGCATATATTTCTGA 25 V_PU1_Q4_M01172 TRANSFAC + 80457344 80457362 1.0E-06 TCAATTCAGTTCTCCTTTT 19 V_PU1_Q4_M01172 TRANSFAC + 80457357 80457375 9.0E-06 CCTTTTTCTTTCTTCTTCT 19 V_LYF1_01_M00141 TRANSFAC - 80456872 80456880 3.0E-06 TTTGGGAGA 9 V_TCFAP2E_04_M02926 TRANSFAC + 80457451 80457464 2.0E-06 CTATTAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 80457452 80457465 2.0E-06 TATTAAAAAAAAAT 14 V_KLF7_04_M02877 TRANSFAC + 80458101 80458117 8.0E-06 ATGAATACGCCCTAAGT 17 V_HNF6_Q6_M00639 TRANSFAC + 80457406 80457417 1.0E-06 AAAAATCAATGT 12 V_ELF4_04_M02850 TRANSFAC + 80457450 80457466 4.0E-06 CCTATTAAAAAAAAATA 17 V_ELF4_04_M02850 TRANSFAC + 80457452 80457468 3.0E-06 TATTAAAAAAAAATAGA 17 V_ELF4_04_M02850 TRANSFAC + 80457453 80457469 1.0E-06 ATTAAAAAAAAATAGAA 17 V_FOXA2_02_M02853 TRANSFAC - 80457765 80457779 3.0E-06 GAAAACAACAAAGGT 15 V_POU3F2_01_M00463 TRANSFAC + 80457266 80457279 4.0E-06 TTGCATATATTTCT 14 V_ZFP105_03_M02827 TRANSFAC + 80457452 80457466 3.0E-06 TATTAAAAAAAAATA 15 V_ZFP105_03_M02827 TRANSFAC + 80457453 80457467 0.0E+00 ATTAAAAAAAAATAG 15 V_GFI1_01_M00250 TRANSFAC + 80457165 80457188 9.0E-06 ATCAGAAAAATCACTACGTAATAG 24 V_NKX61_01_M00424 TRANSFAC - 80457806 80457818 7.0E-06 ATTTTAATGGTTC 13 V_IRF2_01_M00063 TRANSFAC + 80457090 80457102 6.0E-06 GAAACCTGAAACT 13 V_HOXB9_01_M01426 TRANSFAC + 80457805 80457820 5.0E-06 AGAACCATTAAAATGC 16 V_HNF3_Q6_M00791 TRANSFAC + 80457456 80457468 5.0E-06 AAAAAAAAATAGA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 80457263 80457273 1.0E-05 TATTTGCATAT 11 V_LXR_DR4_Q3_M00766 TRANSFAC - 80458043 80458058 9.0E-06 TGACTTCACGTAACCC 16 V_CLOX_01_M00103 TRANSFAC - 80457404 80457418 9.0E-06 AACATTGATTTTTGA 15 V_OCT1_04_M00138 TRANSFAC - 80457257 80457279 0.0E+00 AGAAATATATGCAAATAAGAAGA 23 V_OCT1_04_M00138 TRANSFAC + 80458631 80458653 1.0E-05 GTATATCCATGATAAATGAAAGT 23 V_OCAB_Q6_M02113 TRANSFAC - 80457263 80457273 0.0E+00 ATATGCAAATA 11 V_OCAB_Q6_M02113 TRANSFAC + 80457264 80457274 1.0E-05 ATTTGCATATA 11 V_CDC5_01_M00478 TRANSFAC + 80456729 80456740 0.0E+00 CATTTAACATAA 12 V_TBP_06_M02814 TRANSFAC + 80457451 80457466 7.0E-06 CTATTAAAAAAAAATA 16 V_OCT1_B_M00342 TRANSFAC - 80457263 80457272 0.0E+00 TATGCAAATA 10 V_OCT_Q6_M00795 TRANSFAC + 80457262 80457272 0.0E+00 TTATTTGCATA 11 V_HOXD9_Q2_M01834 TRANSFAC + 80457807 80457816 8.0E-06 AACCATTAAA 10 V_GATA4_Q3_M00632 TRANSFAC - 80457354 80457365 5.0E-06 AGAAAAAGGAGA 12 V_GR_Q6_02_M01836 TRANSFAC + 80456864 80456876 1.0E-06 CAATATGTTCTCC 13 V_GCNF_01_M00526 TRANSFAC - 80458271 80458288 6.0E-06 TTCAAGCTCAAGTTAACC 18 V_SOX15_03_M02799 TRANSFAC + 80457455 80457471 6.0E-06 TAAAAAAAAATAGAATT 17 V_MTF1_06_M02882 TRANSFAC + 80457163 80457176 5.0E-06 AGATCAGAAAAATC 14 V_MTF1_06_M02882 TRANSFAC + 80457451 80457464 6.0E-06 CTATTAAAAAAAAA 14 V_POU5F1_01_M01307 TRANSFAC - 80457263 80457272 2.0E-06 TATGCAAATA 10 V_AP4_01_M00005 TRANSFAC - 80457599 80457616 1.0E-06 TGAAACAGCGGTTGGCAG 18 V_EHF_06_M02745 TRANSFAC + 80457278 80457292 4.0E-06 CTGAGCAGGAAGTTA 15 V_IPF1_05_M01255 TRANSFAC + 80457807 80457818 1.0E-06 AACCATTAAAAT 12 V_OCT2_01_M01368 TRANSFAC - 80457260 80457275 0.0E+00 ATATATGCAAATAAGA 16 V_OCT2_01_M01368 TRANSFAC + 80457327 80457342 7.0E-06 CTTCATGCTAATCTAA 16 V_OCT1_Q6_M00195 TRANSFAC - 80457261 80457275 0.0E+00 ATATATGCAAATAAG 15 V_HEN1_02_M00058 TRANSFAC - 80457637 80457658 8.0E-06 CTGTGGAGCAGCTGCAGCAATG 22 V_TCF7_04_M02921 TRANSFAC + 80457449 80457463 1.0E-06 CCCTATTAAAAAAAA 15 V_DMRT7_01_M01151 TRANSFAC - 80457409 80457422 5.0E-06 TTGAAACATTGATT 14 V_HNF1B_01_M01425 TRANSFAC + 80458268 80458284 6.0E-06 AGTGGTTAACTTGAGCT 17 V_FOXO3_01_M00477 TRANSFAC + 80457769 80457782 1.0E-06 TTGTTGTTTTCCTA 14 V_ETS1_B_M00339 TRANSFAC + 80457282 80457296 6.0E-06 GCAGGAAGTTATGCG 15 V_BBX_03_M02739 TRANSFAC - 80456724 80456738 5.0E-06 ATGTTAAATGAACAG 15 V_BBX_03_M02739 TRANSFAC + 80457340 80457354 1.0E-05 TAATTCAATTCAGTT 15 V_OCT1_06_M00162 TRANSFAC + 80457261 80457274 3.0E-06 CTTATTTGCATATA 14 V_LEF1TCF1_Q4_M00978 TRANSFAC + 80457766 80457776 0.0E+00 CCTTTGTTGTT 11 V_ZFP281_04_M02831 TRANSFAC + 80457579 80457593 9.0E-06 CCACCTTCCCCCACC 15 V_SRF_06_M02916 TRANSFAC + 80457450 80457466 4.0E-06 CCTATTAAAAAAAAATA 17 V_SRF_06_M02916 TRANSFAC + 80457451 80457467 0.0E+00 CTATTAAAAAAAAATAG 17 V_SRF_06_M02916 TRANSFAC + 80457452 80457468 4.0E-06 TATTAAAAAAAAATAGA 17 V_SRF_06_M02916 TRANSFAC + 80457453 80457469 0.0E+00 ATTAAAAAAAAATAGAA 17 V_SRF_06_M02916 TRANSFAC + 80457454 80457470 2.0E-06 TTAAAAAAAAATAGAAT 17 V_HFH3_01_M00289 TRANSFAC + 80457260 80457272 7.0E-06 TCTTATTTGCATA 13 V_SATB1_01_M01232 TRANSFAC + 80457452 80457463 9.0E-06 TATTAAAAAAAA 12 V_SIX6_08_M02897 TRANSFAC - 80458625 80458641 4.0E-06 CATGGATATACACTCAT 17 V_SOX4_01_M01308 TRANSFAC - 80457766 80457773 1.0E-05 AACAAAGG 8 V_SOX1_03_M02802 TRANSFAC + 80457337 80457352 1.0E-06 ATCTAATTCAATTCAG 16 V_SOX1_03_M02802 TRANSFAC - 80457460 80457475 7.0E-06 CATCAATTCTATTTTT 16 V_PIT1_Q6_M00802 TRANSFAC + 80457257 80457274 5.0E-06 TCTTCTTATTTGCATATA 18 V_SOX15_04_M02903 TRANSFAC - 80457338 80457352 7.0E-06 CTGAATTGAATTAGA 15 V_HMEF2_Q6_M00406 TRANSFAC + 80456817 80456832 1.0E-06 AGCTACAAATAACCAT 16 V_PBX1_04_M01357 TRANSFAC + 80457404 80457420 5.0E-06 TCAAAAATCAATGTTTC 17 V_DMRT1_01_M01146 TRANSFAC - 80457408 80457422 7.0E-06 TTGAAACATTGATTT 15 V_DTYPEPA_B_M00334 TRANSFAC + 80457808 80457817 3.0E-06 ACCATTAAAA 10 V_GLIS2_04_M02863 TRANSFAC + 80457450 80457463 2.0E-06 CCTATTAAAAAAAA 14 V_PAX4_04_M00380 TRANSFAC - 80457249 80457278 5.0E-06 GAAATATATGCAAATAAGAAGACAGATCCT 30 V_PAX4_04_M00380 TRANSFAC + 80457456 80457485 3.0E-06 AAAAAAAAATAGAATTGATGCAAACAGCCT 30 V_PAX4_04_M00380 TRANSFAC - 80457751 80457780 8.0E-06 GGAAAACAACAAAGGTGGACTCCCCACTCT 30 V_SMAD1_01_M01590 TRANSFAC - 80457362 80457373 4.0E-06 AAGAAGAAAGAA 12 V_NANOG_02_M01247 TRANSFAC - 80457358 80457377 2.0E-06 GGAGAAGAAGAAAGAAAAAG 20 V_NANOG_02_M01247 TRANSFAC + 80457453 80457472 7.0E-06 ATTAAAAAAAAATAGAATTG 20 V_OCT4_01_M01125 TRANSFAC + 80457810 80457824 2.0E-06 CATTAAAATGCAGAA 15 V_OCT4_01_M01125 TRANSFAC - 80458633 80458647 1.0E-05 ATTTATCATGGATAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.