Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RSG1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79363 REM2 and RAB-like small GTPase 1 chr1 - 16563159 - 16568659 16563659 Transcription Factor Binding Sites   Download all TFBS in the RSG1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX21_TBX_full_dimeric_16_1 SELEX + 16564613 16564628 5.0E-06 TGTCTGAGGTCACACC 16 TBX21_TBX_full_dimeric_16_1 SELEX - 16564613 16564628 4.0E-06 GGTGTGACCTCAGACA 16 TBX1_TBX_DBD_dimeric_20_2 SELEX + 16563466 16563485 4.0E-06 TTGTCACCTCCGGGGGTCAG 20 NR2F1_nuclearreceptor_DBD_monomeric_13_1 SELEX + 16564106 16564118 3.0E-06 GAGAGGTCAAGGG 13 RFX4_RFX_DBD_dimeric_16_1 SELEX + 16563713 16563728 1.0E-06 TGTTGCCATGGAGACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 16563713 16563728 0.0E+00 CGTCTCCATGGCAACA 16 EBF1_EBF_full_dimeric_14_1 SELEX + 16563074 16563087 7.0E-06 TCTCCCCAGGGAAA 14 ZBTB7B_C2H2_full_monomeric_12_1 SELEX + 16563203 16563214 1.0E-06 ACAACCACCGAA 12 HINFP1_C2H2_full_monomeric_12_1 SELEX + 16563775 16563786 1.0E-06 CAACGTCCGCAG 12 Tp73_p53l_DBD_dimeric_18_1 SELEX - 16561926 16561943 8.0E-06 AGCAGGTTCTGGCATGCA 18 SCRT2_C2H2_DBD_monomeric_13_1 SELEX + 16563055 16563067 0.0E+00 GAGCAACAGGTGA 13 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 16563593 16563608 8.0E-06 AAACGCCCACCCGCAC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 16563713 16563728 0.0E+00 TGTTGCCATGGAGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 16563713 16563728 1.0E-06 CGTCTCCATGGCAACA 16 OTX2_homeodomain_DBD_monomeric_8_1 SELEX + 16564032 16564039 7.0E-06 TTAATCCT 8 SCRT1_C2H2_DBD_monomeric_15_1 SELEX + 16563055 16563069 1.0E-06 GAGCAACAGGTGACA 15 MIZF_MA0131.1 JASPAR + 16563775 16563784 3.0E-06 CAACGTCCGC 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 16562742 16562751 7.0E-06 CCAATAAATA 10 RFX2_RFX_DBD_dimeric_16_1 SELEX + 16563713 16563728 0.0E+00 TGTTGCCATGGAGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 16563713 16563728 0.0E+00 CGTCTCCATGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 16563713 16563728 1.0E-06 TGTTGCCATGGAGACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 16563713 16563728 1.0E-06 CGTCTCCATGGCAACA 16 ZBTB7C_C2H2_full_monomeric_12_1 SELEX + 16563203 16563214 1.0E-06 ACAACCACCGAA 12 TFAP4_bHLH_full_dimeric_10_1 SELEX + 16562618 16562627 7.0E-06 CACAGCTGAT 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 16562742 16562751 8.0E-06 CCAATAAATA 10 ETV6_ETS_full_monomeric_10_1 SELEX - 16563634 16563643 9.0E-06 GGCGGAAGTG 10 TP53_MA0106.1 JASPAR - 16561927 16561946 8.0E-06 CCAAGCAGGTTCTGGCATGC 20 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX + 16564607 16564625 6.0E-06 GTGACTTGTCTGAGGTCAC 19 TBX1_TBX_DBD_dimeric_20_1 SELEX + 16564128 16564147 1.0E-06 AAGTTTTAAAAAATGAGTCA 20 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 16562742 16562751 6.0E-06 CCAATAAATA 10 V_STAT_Q6_M00777 TRANSFAC - 16564592 16564604 7.0E-06 TATGTTTCTGAGA 13 V_CEBP_C_M00201 TRANSFAC - 16563116 16563133 1.0E-05 GGTGTTTGGTAAGTGCCT 18 V_CEBP_01_M00159 TRANSFAC - 16563119 16563131 2.0E-06 TGTTTGGTAAGTG 13 V_AP2_Q6_M00189 TRANSFAC + 16563130 16563141 4.0E-06 CACCCGCCGGCG 12 V_ZFP691_03_M02833 TRANSFAC + 16563974 16563990 2.0E-06 ATAGCAGTGCTCCATAT 17 V_CRX_Q4_M00623 TRANSFAC + 16561966 16561978 3.0E-06 TTATTAATTTCCC 13 V_AP1_Q6_01_M00925 TRANSFAC + 16564058 16564066 9.0E-06 ATGACTTAA 9 V_AP1_C_M00199 TRANSFAC + 16564140 16564148 3.0E-06 ATGAGTCAG 9 V_SMAD4_Q6_M00733 TRANSFAC + 16563477 16563491 1.0E-06 GGGGGTCAGACAGCC 15 V_AP1_01_M00517 TRANSFAC + 16564138 16564150 7.0E-06 AAATGAGTCAGAG 13 V_TBP_06_M02814 TRANSFAC - 16564128 16564143 3.0E-06 TCATTTTTTAAAACTT 16 V_AP1_Q2_01_M00924 TRANSFAC - 16564136 16564147 2.0E-06 TGACTCATTTTT 12 V_ELF1_Q6_M00746 TRANSFAC - 16563932 16563943 5.0E-06 AGAAGAGGAAAC 12 V_T3R_01_M00239 TRANSFAC + 16564614 16564629 3.0E-06 GTCTGAGGTCACACCG 16 V_TAL1_01_M01591 TRANSFAC + 16563913 16563925 4.0E-06 CATGCTTCTCTGT 13 V_ZBTB3_03_M02825 TRANSFAC - 16563003 16563019 6.0E-06 TGCTCCACTGCAGTCTT 17 V_NKX61_02_M01469 TRANSFAC + 16561964 16561979 4.0E-06 CCTTATTAATTTCCCC 16 V_DOBOX5_01_M01463 TRANSFAC - 16564027 16564043 6.0E-06 AAGCAGGATTAATAGAG 17 V_MTATA_B_M00320 TRANSFAC - 16564124 16564140 8.0E-06 TTTTTTAAAACTTGAGC 17 V_P53_05_M01655 TRANSFAC - 16561925 16561944 5.0E-06 AAGCAGGTTCTGGCATGCAG 20 V_TBP_04_M02918 TRANSFAC - 16562788 16562802 2.0E-06 CCCATTTAACCTCTC 15 V_P63_01_M01656 TRANSFAC + 16561925 16561944 9.0E-06 CTGCATGCCAGAACCTGCTT 20 V_FOXJ2_01_M00422 TRANSFAC + 16564183 16564200 7.0E-06 CATTCAACAAATACTGAG 18 V_NFE2_01_M00037 TRANSFAC - 16562669 16562679 8.0E-06 AACTGACTCAC 11 V_OBOX5_01_M01381 TRANSFAC - 16564027 16564043 7.0E-06 AAGCAGGATTAATAGAG 17 V_OBOX6_06_M03067 TRANSFAC + 16564027 16564043 7.0E-06 CTCTATTAATCCTGCTT 17 V_RFX1_02_M00281 TRANSFAC - 16563712 16563729 4.0E-06 GCGTCTCCATGGCAACAA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.