Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FTO Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79068 fat mass and obesity associated chr16 + 53732874 - 53738374 53737874 Transcription Factor Binding Sites   Download all TFBS in the FTO promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HSFY2_HSF_DBD_dimer-of-dimers_15_1 SELEX + 53741740 53741754 4.0E-06 TTAGAACAGTTCCAT 15 EBF1_EBF_full_dimeric_14_1 SELEX + 53741803 53741816 6.0E-06 CCTCCCTAGGGAAC 14 SOX8_HMG_full_dimeric_17_1 SELEX + 53741772 53741788 3.0E-06 ATTCATTTGCAGTTATT 17 znf143_MA0088.1 JASPAR - 53737811 53737830 6.0E-06 CATTTCCCAGGAGGCTACGG 20 znf143_MA0088.1 JASPAR - 53737946 53737965 0.0E+00 CAACTCCCAGGATGCACCGC 20 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 53737947 53737962 1.0E-06 CTCCCAGGATGCACCG 16 ELK1_MA0028.1 JASPAR + 53738197 53738206 5.0E-06 GAACCGGAAG 10 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 53737457 53737471 6.0E-06 TGAAGGTGAGAGTTG 15 ETV6_ETS_full_dimeric_15_1 SELEX + 53738194 53738208 8.0E-06 AGGGAACCGGAAGGG 15 V_DMRT4_01_M01149 TRANSFAC + 53738294 53738306 1.0E-06 GATGTTACAAATT 13 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 53741713 53741726 3.0E-06 TGACAGTTACACGA 14 V_EBF_Q6_M00977 TRANSFAC + 53741804 53741814 7.0E-06 CTCCCTAGGGA 11 V_EBF_Q6_M00977 TRANSFAC - 53741805 53741815 1.0E-06 TTCCCTAGGGA 11 V_COUPTF_Q6_M01036 TRANSFAC - 53738177 53738199 7.0E-06 TTCCCTGATCCTTGCTCACAGCG 23 V_PU1_Q4_M01172 TRANSFAC + 53741792 53741810 3.0E-06 CAATTCTACTTCCTCCCTA 19 V_CEBPB_01_M00109 TRANSFAC - 53741784 53741797 7.0E-06 GAATTGAGAAATAA 14 V_PR_Q2_M00960 TRANSFAC - 53741829 53741838 9.0E-06 TAAAGAACAG 10 V_STAF_01_M00262 TRANSFAC - 53737943 53737964 0.0E+00 AACTCCCAGGATGCACCGCGGC 22 V_ZBP89_Q4_M01816 TRANSFAC + 53737688 53737697 2.0E-06 TCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC + 53738031 53738043 9.0E-06 AGGAGGCGGGGTC 13 V_OCT1_04_M00138 TRANSFAC - 53741769 53741791 4.0E-06 AGAAATAACTGCAAATGAATACA 23 V_OCT1_04_M00138 TRANSFAC - 53741833 53741855 8.0E-06 TCCAGAAAAGGCAAATCTAAAGA 23 V_VMYB_01_M00003 TRANSFAC - 53741779 53741788 8.0E-06 AATAACTGCA 10 V_STAF_02_M00264 TRANSFAC - 53737944 53737964 1.0E-06 AACTCCCAGGATGCACCGCGG 21 V_SP1_01_M00008 TRANSFAC + 53738033 53738042 7.0E-06 GAGGCGGGGT 10 V_TBP_06_M02814 TRANSFAC - 53741854 53741869 7.0E-06 TCTATATAAAAATGTC 16 V_TBP_06_M02814 TRANSFAC + 53741856 53741871 6.0E-06 CATTTTTATATAGATG 16 V_TBP_06_M02814 TRANSFAC - 53741856 53741871 5.0E-06 CATCTATATAAAAATG 16 V_HNF4A_02_M02868 TRANSFAC - 53737837 53737852 6.0E-06 GGCTAGAGTCCAAGGA 16 V_GR_Q6_02_M01836 TRANSFAC + 53741825 53741837 3.0E-06 TACTCTGTTCTTT 13 V_PTF1BETA_Q6_M00657 TRANSFAC - 53737962 53737975 4.0E-06 GAAAAAACTACAAC 14 V_GABPBETA_Q3_M01876 TRANSFAC + 53738199 53738209 4.0E-06 ACCGGAAGGGC 11 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 53737678 53737686 8.0E-06 GAGGGTGGG 9 V_MYB_Q5_01_M00913 TRANSFAC + 53741718 53741726 4.0E-06 TAACTGTCA 9 V_SRF_02_M01257 TRANSFAC - 53741839 53741856 1.0E-06 GTCCAGAAAAGGCAAATC 18 V_ZFP281_04_M02831 TRANSFAC + 53737685 53737699 8.0E-06 TCATCCTCCCCCATC 15 V_DMRT1_01_M01146 TRANSFAC + 53741760 53741774 5.0E-06 AAGAAACTTTGTATT 15 V_RFX1_02_M00281 TRANSFAC - 53737741 53737758 8.0E-06 TCGGCGCTATAGCAACGG 18 V_HSF1_Q6_01_M02017 TRANSFAC - 53741753 53741766 4.0E-06 GTTTCTTCTGGAAT 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.