Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CAMKV Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 79012 CaM kinase-like vesicle-associated chr3 - 49906869 - 49912369 49907369 Transcription Factor Binding Sites   Download all TFBS in the CAMKV promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints PITX3_homeodomain_DBD_monomeric_9_1 SELEX + 49905764 49905772 5.0E-06 CTTAATCCC 9 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 49907389 49907399 1.0E-05 GCCCCGCCCCC 11 LHX6_homeodomain_full_dimeric_16_1 SELEX + 49910460 49910475 5.0E-06 CAATCAAGGGTAATTG 16 LHX6_homeodomain_full_dimeric_16_1 SELEX - 49910460 49910475 0.0E+00 CAATTACCCTTGATTG 16 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 49910545 49910562 5.0E-06 AAAGGTCAGGCCAGATCA 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 49910459 49910476 6.0E-06 GCAATCAAGGGTAATTGC 18 RFX4_RFX_DBD_dimeric_16_1 SELEX + 49905015 49905030 9.0E-06 GGTTGCTATGGTGATG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 49905015 49905030 4.0E-06 CATCACCATAGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 49906789 49906804 1.0E-06 AATTTCCATGACAACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX + 49910438 49910453 0.0E+00 AATTGCCATGGCAACA 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 49910438 49910453 1.0E-06 TGTTGCCATGGCAATT 16 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 49910703 49910714 0.0E+00 GCTTTTCCCACA 12 POU1F1_POU_DBD_monomeric_14_1 SELEX + 49905612 49905625 9.0E-06 GGTATGGAAATGAG 14 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 49910535 49910552 4.0E-06 GGGGTGCAGTAAAGGTCA 18 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 49910545 49910562 2.0E-06 AAAGGTCAGGCCAGATCA 18 Tcfap2a_TFAP_DBD_dimeric_13_1 SELEX - 49907431 49907443 5.0E-06 TGCCCTTAAGGCT 13 TFAP2C_TFAP_full_dimeric_13_1 SELEX + 49907431 49907443 7.0E-06 AGCCTTAAGGGCA 13 PITX1_homeodomain_full_monomeric_8_1 SELEX + 49905765 49905772 1.0E-05 TTAATCCC 8 PROP1_homeodomain_full_dimeric_11_1 SELEX - 49910420 49910430 1.0E-05 TAATGTAATAA 11 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 49905015 49905030 1.0E-06 GGTTGCTATGGTGATG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 49906789 49906804 2.0E-06 CGTTGTCATGGAAATT 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 49906789 49906804 6.0E-06 AATTTCCATGACAACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 49910438 49910453 1.0E-06 AATTGCCATGGCAACA 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 49910438 49910453 0.0E+00 TGTTGCCATGGCAATT 16 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX + 49910536 49910552 3.0E-06 GGGTGCAGTAAAGGTCA 17 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 49910536 49910552 8.0E-06 GGGTGCAGTAAAGGTCA 17 HOXA5_MA0158.1 JASPAR - 49906801 49906808 7.0E-06 CACTAATT 8 ALX3_homeodomain_full_dimeric_13_1 SELEX - 49910419 49910431 7.0E-06 ATAATGTAATAAC 13 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 49910459 49910476 3.0E-06 GCAATCAAGGGTAATTGC 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 49910459 49910476 3.0E-06 GCAATTACCCTTGATTGC 18 SP1_MA0079.2 JASPAR - 49905051 49905060 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 49905702 49905711 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 49907389 49907398 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR + 49910380 49910389 7.0E-06 CCCCGCCCCC 10 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX + 49911161 49911176 3.0E-06 AAGCACAAAGTCCACC 16 DRGX_homeodomain_DBD_dimeric_13_1 SELEX - 49910419 49910431 7.0E-06 ATAATGTAATAAC 13 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 49910536 49910552 6.0E-06 GGGTGCAGTAAAGGTCA 17 PHOX2B_homeodomain_full_dimeric_11_1 SELEX - 49910420 49910430 6.0E-06 TAATGTAATAA 11 Alx4_homeodomain_DBD_dimeric_13_1 SELEX - 49910419 49910431 7.0E-06 ATAATGTAATAAC 13 SP4_C2H2_full_monomeric_17_1 SELEX - 49907386 49907402 3.0E-06 GAGGCCCCGCCCCCAGC 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 49910536 49910552 8.0E-06 GGGTGCAGTAAAGGTCA 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 49910546 49910562 6.0E-06 AAGGTCAGGCCAGATCA 17 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX - 49907431 49907443 4.0E-06 TGCCCTTAAGGCT 13 RFX2_RFX_DBD_dimeric_16_1 SELEX + 49905015 49905030 2.0E-06 GGTTGCTATGGTGATG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 49905015 49905030 4.0E-06 CATCACCATAGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 49906789 49906804 3.0E-06 CGTTGTCATGGAAATT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 49906789 49906804 3.0E-06 AATTTCCATGACAACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 49910438 49910453 0.0E+00 AATTGCCATGGCAACA 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 49910438 49910453 0.0E+00 TGTTGCCATGGCAATT 16 PRRX1_homeodomain_full_dimeric_11_1 SELEX - 49910420 49910430 5.0E-06 TAATGTAATAA 11 RFX5_RFX_DBD_dimeric_16_3 SELEX - 49905015 49905030 1.0E-06 CATCACCATAGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 49906789 49906804 4.0E-06 AATTTCCATGACAACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 49910438 49910453 0.0E+00 AATTGCCATGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 49910438 49910453 0.0E+00 TGTTGCCATGGCAATT 16 CART1_homeodomain_DBD_dimeric_13_1 SELEX - 49910419 49910431 3.0E-06 ATAATGTAATAAC 13 RHOXF1_homeodomain_full_monomeric_8_1 SELEX + 49905765 49905772 1.0E-05 TTAATCCC 8 Uncx_homeodomain_DBD_dimeric_13_1 SELEX - 49910419 49910431 6.0E-06 ATAATGTAATAAC 13 TFAP2B_TFAP_DBD_dimeric_13_1 SELEX - 49907431 49907443 1.0E-06 TGCCCTTAAGGCT 13 Pou5f1_MA0142.1 JASPAR + 49906789 49906803 3.0E-06 CGTTGTCATGGAAAT 15 GSC2_homeodomain_DBD_monomeric_10_1 SELEX + 49905764 49905773 2.0E-06 CTTAATCCCC 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 49910705 49910715 5.0E-06 TTTTCCCACAC 11 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 49910420 49910430 4.0E-06 TAATGTAATAA 11 RUNX1_MA0002.2 JASPAR + 49910519 49910529 8.0E-06 GTCTGTGGTTG 11 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 49910705 49910718 2.0E-06 TTTTCCCACACCAC 14 REST_MA0138.2 JASPAR - 49905379 49905399 0.0E+00 CCCAGTACCATGGATAGCTCC 21 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 49910705 49910716 5.0E-06 TTTTCCCACACC 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 49905613 49905624 7.0E-06 GTATGGAAATGA 12 V_AP2ALPHA_Q6_M01857 TRANSFAC - 49907374 49907384 6.0E-06 CGCCCCCGGCC 11 V_GEN_INI_B_M00315 TRANSFAC - 49905619 49905626 1.0E-05 CCTCATTT 8 V_OBOX1_01_M01450 TRANSFAC - 49905761 49905777 6.0E-06 GAGAGGGGATTAAGCAG 17 V_DEAF1_01_M01001 TRANSFAC + 49905079 49905103 6.0E-06 CCTTCTTCAAGAATTTCCTGAGACC 25 V_POU5F1_02_M02245 TRANSFAC + 49906789 49906803 3.0E-06 CGTTGTCATGGAAAT 15 V_IK_Q5_M01169 TRANSFAC + 49906842 49906851 5.0E-06 GTTGGGAGGG 10 V_IK_Q5_M01169 TRANSFAC - 49907398 49907407 8.0E-06 GTTGGGAGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 49907390 49907399 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 49907410 49907419 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC - 49905614 49905624 7.0E-06 TCATTTCCATA 11 V_DR4_Q2_M00965 TRANSFAC - 49910536 49910552 1.0E-06 TGACCTTTACTGCACCC 17 V_PLAG1_02_M01973 TRANSFAC + 49910310 49910325 0.0E+00 CCCCAGAAGAGGGCCC 16 V_PLAG1_02_M01973 TRANSFAC - 49910319 49910334 6.0E-06 CCCCATTGTGGGCCCT 16 V_RFX4_03_M02789 TRANSFAC - 49905013 49905027 0.0E+00 CACCATAGCAACCCT 15 V_SP1_03_M02281 TRANSFAC - 49905051 49905060 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 49905702 49905711 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 49907389 49907398 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC + 49910380 49910389 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC - 49910378 49910388 3.0E-06 GGGGCGGGGGG 11 V_NFAT2_01_M01748 TRANSFAC + 49906796 49906804 5.0E-06 ATGGAAATT 9 V_GC_01_M00255 TRANSFAC - 49905699 49905712 4.0E-06 TGGGGGAGGGGTTG 14 V_GC_01_M00255 TRANSFAC + 49907388 49907401 0.0E+00 TGGGGGCGGGGCCT 14 V_GEN_INI3_B_M00314 TRANSFAC - 49905619 49905626 1.0E-05 CCTCATTT 8 V_RUNX1_01_M02257 TRANSFAC + 49910519 49910529 8.0E-06 GTCTGTGGTTG 11 V_KROX_Q6_M00982 TRANSFAC - 49906368 49906381 8.0E-06 CCAGCCCCCTCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 49907373 49907386 5.0E-06 CCCGCCCCCGGCCC 14 V_KROX_Q6_M00982 TRANSFAC - 49907384 49907397 1.0E-05 CCCGCCCCCAGCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 49905703 49905712 4.0E-06 CCCTCCCCCA 10 V_SP1_Q6_M00196 TRANSFAC + 49907388 49907400 1.0E-06 TGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 49907409 49907421 7.0E-06 TCGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 49910378 49910390 6.0E-06 GGGGGGCGGGGGG 13 V_AP2BETA_Q3_M01858 TRANSFAC + 49907379 49907394 4.0E-06 GGGGCGGGCTGGGGGC 16 V_OCT1_05_M00161 TRANSFAC - 49906793 49906806 4.0E-06 CTAATTTCCATGAC 14 V_RFXDC2_03_M02790 TRANSFAC - 49905013 49905027 6.0E-06 CACCATAGCAACCCT 15 V_CMYB_01_M00004 TRANSFAC + 49906832 49906849 5.0E-06 CCCGGGGACAGTTGGGAG 18 V_JUNDM2_04_M02876 TRANSFAC - 49910393 49910408 9.0E-06 TGGAGTGAGTCACAAG 16 V_REST_01_M01256 TRANSFAC + 49905375 49905396 0.0E+00 GCCAGGAGCTATCCATGGTACT 22 V_HOXA5_03_M02271 TRANSFAC - 49906801 49906808 7.0E-06 CACTAATT 8 V_SP1SP3_Q4_M01219 TRANSFAC - 49905309 49905319 4.0E-06 CCGCCCCCTTC 11 V_ZBRK1_01_M01105 TRANSFAC + 49910338 49910352 4.0E-06 GGCAAGCAGTCTTTT 15 V_HNF4_DR1_Q3_M00764 TRANSFAC - 49911162 49911174 7.0E-06 TGGACTTTGTGCT 13 V_AP1_01_M00517 TRANSFAC - 49910394 49910406 8.0E-06 GAGTGAGTCACAA 13 V_SP3_Q3_M00665 TRANSFAC + 49909379 49909392 3.0E-06 AGCAGTGGGCAGGG 14 V_ISGF4G_04_M02875 TRANSFAC + 49906404 49906417 5.0E-06 GCCAAACAGTACAA 14 V_HNF4A_02_M02868 TRANSFAC + 49911163 49911178 1.0E-05 GCACAAAGTCCACCTC 16 V_SP4_Q5_M01273 TRANSFAC - 49907389 49907399 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 49907410 49907420 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 49910379 49910389 5.0E-06 CCCCCGCCCCC 11 V_CAAT_01_M00254 TRANSFAC - 49909410 49909421 6.0E-06 AACAGCCAATGA 12 V_ATF1_Q6_M00691 TRANSFAC - 49910480 49910490 3.0E-06 CCCTGACGACA 11 V_ALPHACP1_01_M00687 TRANSFAC - 49909409 49909419 1.0E-05 CAGCCAATGAT 11 V_AP4_01_M00005 TRANSFAC + 49911051 49911068 1.0E-06 AGGGCCAGCTGTGGAAGG 18 V_FOXL1_02_M02857 TRANSFAC - 49910426 49910441 8.0E-06 AATTTCAAACATAATG 16 V_MYOGNF1_01_M00056 TRANSFAC - 49907289 49907317 2.0E-06 AAGCGGCTGCATCTGGCGCCGCGTCTGCC 29 V_GEN_INI2_B_M00313 TRANSFAC - 49905619 49905626 1.0E-05 CCTCATTT 8 V_DOBOX5_01_M01463 TRANSFAC - 49905760 49905776 6.0E-06 AGAGGGGATTAAGCAGA 17 V_NRSF_01_M00256 TRANSFAC - 49905379 49905399 1.0E-06 CCCAGTACCATGGATAGCTCC 21 V_OTX2_01_M01387 TRANSFAC - 49905760 49905776 3.0E-06 AGAGGGGATTAAGCAGA 17 V_REST_02_M02256 TRANSFAC - 49905379 49905399 0.0E+00 CCCAGTACCATGGATAGCTCC 21 V_ZFP281_01_M01597 TRANSFAC + 49905050 49905060 3.0E-06 AGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 49905702 49905712 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 49907388 49907398 6.0E-06 TGGGGGCGGGG 11 V_OCT1_07_M00248 TRANSFAC + 49906793 49906804 7.0E-06 GTCATGGAAATT 12 V_ZFP281_04_M02831 TRANSFAC - 49905048 49905062 4.0E-06 CTCCCCTCCCCCTCC 15 V_ZFP281_04_M02831 TRANSFAC + 49905700 49905714 2.0E-06 AACCCCTCCCCCATC 15 V_ZFP281_04_M02831 TRANSFAC + 49905776 49905790 7.0E-06 TCACCAACCCCCAAC 15 V_RFX3_04_M02788 TRANSFAC - 49905009 49905031 2.0E-06 CCATCACCATAGCAACCCTTTAC 23 V_PITX2_01_M01447 TRANSFAC - 49905760 49905776 4.0E-06 AGAGGGGATTAAGCAGA 17 V_SP1_Q2_01_M00933 TRANSFAC - 49907389 49907398 4.0E-06 CCCCGCCCCC 10 V_SP1_Q2_01_M00933 TRANSFAC + 49910380 49910389 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 49905048 49905061 2.0E-06 GGAGGGGGAGGGGA 14 V_SP1_Q4_01_M00932 TRANSFAC + 49907388 49907400 1.0E-06 TGGGGGCGGGGCC 13 V_OTX1_01_M01366 TRANSFAC - 49905760 49905776 8.0E-06 AGAGGGGATTAAGCAGA 17 V_RFX1_02_M00281 TRANSFAC + 49910437 49910454 0.0E+00 AAATTGCCATGGCAACAA 18 V_OCT4_01_M01125 TRANSFAC + 49906789 49906803 4.0E-06 CGTTGTCATGGAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.