Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

DNALI1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7802 dynein, axonemal, light intermediate chain 1 chr1 + 38017519 - 38023019 38022519 Transcription Factor Binding Sites   Download all TFBS in the DNALI1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR - 38019913 38019923 7.0E-06 CCGGAAGCGGA 11 SP3_C2H2_DBD_monomeric_11_1 SELEX - 38019981 38019991 5.0E-06 GCCACACCCAC 11 RFX4_RFX_DBD_dimeric_16_1 SELEX + 38022523 38022538 1.0E-06 GGTTTCCATGGTGACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 38022523 38022538 1.0E-06 CGTCACCATGGAAACC 16 FOXL1_forkhead_full_dimeric_13_1 SELEX + 38026880 38026892 1.0E-06 TGTAAACAAACCA 13 FOXO3_MA0157.1 JASPAR + 38026880 38026887 7.0E-06 TGTAAACA 8 FOXO1_forkhead_DBD_monomeric_8_1 SELEX + 38026881 38026888 7.0E-06 GTAAACAA 8 GATA5_GATA_DBD_monomeric_8_1 SELEX - 38025788 38025795 7.0E-06 AGATAAGA 8 EGR1_C2H2_full_monomeric_14_1 SELEX - 38022498 38022511 8.0E-06 CCCGCCCCCGCGCT 14 GATA4_GATA_DBD_monomeric_8_1 SELEX - 38025788 38025795 7.0E-06 AGATAAGA 8 HOMEZ_HOMEZ_DBD_monomer-or-dimer_12_1 SELEX + 38026356 38026367 6.0E-06 AAAACGATAACT 12 Pax4_MA0068.1 JASPAR + 38023859 38023888 4.0E-06 AAATTCTTTCCCAAATCCAACCACTTTTCA 30 Klf4_MA0039.2 JASPAR + 38019982 38019991 2.0E-06 TGGGTGTGGC 10 LEF1_HMG_DBD_monomeric_15_1 SELEX - 38023795 38023809 9.0E-06 AGTGATCAAAAGGAA 15 USF1_bHLH_DBD_dimeric_10_1 SELEX + 38019962 38019971 5.0E-06 AACACGTGAC 10 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX - 38022511 38022526 0.0E+00 AACCGCCCCCTCACTC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 38022523 38022538 0.0E+00 GGTTTCCATGGTGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 38022523 38022538 1.0E-06 CGTCACCATGGAAACC 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 38026881 38026891 5.0E-06 GTAAACAAACC 11 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 38026256 38026267 9.0E-06 TTTCCCTACACC 12 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 38019962 38019971 5.0E-06 AACACGTGAC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 38022563 38022572 6.0E-06 AGCAGCTGCC 10 Gfi_MA0038.1 JASPAR - 38019832 38019841 3.0E-06 AAAATCACAG 10 SP4_C2H2_full_monomeric_17_1 SELEX + 38022459 38022475 4.0E-06 TTGGCCCCGCCCCACTT 17 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 38019962 38019971 6.0E-06 AACACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 38019962 38019971 6.0E-06 AACACGTGAC 10 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 38022497 38022511 7.0E-06 CCCGCCCCCGCGCTT 15 SP1_C2H2_DBD_monomeric_11_1 SELEX - 38019981 38019991 7.0E-06 GCCACACCCAC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 38026881 38026891 8.0E-06 GTAAACAAACC 11 Gata1_MA0035.2 JASPAR - 38025787 38025797 8.0E-06 TGAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX - 38025788 38025795 7.0E-06 AGATAAGA 8 EGR4_C2H2_DBD_monomeric_16_2 SELEX - 38022497 38022512 3.0E-06 TCCCGCCCCCGCGCTT 16 RFX2_RFX_DBD_dimeric_16_1 SELEX + 38022523 38022538 0.0E+00 GGTTTCCATGGTGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 38022523 38022538 0.0E+00 CGTCACCATGGAAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 38022523 38022538 2.0E-06 GGTTTCCATGGTGACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 38022523 38022538 1.0E-06 CGTCACCATGGAAACC 16 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 38019978 38019992 6.0E-06 GGCCACACCCACTAG 15 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 38019962 38019971 9.0E-06 GTCACGTGTT 10 MAX_MA0058.1 JASPAR + 38019961 38019970 1.0E-06 AAACACGTGA 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 38019962 38019971 5.0E-06 AACACGTGAC 10 FOXI1_forkhead_full_dimeric_17_1 SELEX + 38022530 38022546 2.0E-06 ATGGTGACGGCAAACAA 17 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX + 38026877 38026885 4.0E-06 TGCTGTAAA 9 FOXB1_forkhead_full_monomeric_9_1 SELEX + 38026880 38026888 2.0E-06 TGTAAACAA 9 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 38026256 38026269 7.0E-06 TTTCCCTACACCAG 14 ETV6_ETS_full_dimeric_15_1 SELEX - 38019909 38019923 0.0E+00 CCGGAAGCGGAAGTC 15 FOXO3_forkhead_full_monomeric_8_1 SELEX + 38026881 38026888 7.0E-06 GTAAACAA 8 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 38026256 38026267 1.0E-05 TTTCCCTACACC 12 NFIA_NFI_full_monomeric_10_1 SELEX + 38026950 38026959 2.0E-06 AGTGCCAAGT 10 V_HNF3B_01_M00131 TRANSFAC - 38019851 38019865 8.0E-06 TGATCTGTTTTCTTT 15 V_USF_Q6_M00187 TRANSFAC - 38019962 38019971 7.0E-06 GTCACGTGTT 10 V_TCF3_01_M01594 TRANSFAC + 38024297 38024309 5.0E-06 CCTTTCATTTCTT 13 V_LEF1_04_M02774 TRANSFAC + 38023794 38023810 6.0E-06 ATTCCTTTTGATCACTC 17 V_EBF_Q6_M00977 TRANSFAC - 38022757 38022767 1.0E-06 GTCCCTTGAGA 11 V_FOXO3_02_M02270 TRANSFAC + 38026880 38026887 7.0E-06 TGTAAACA 8 V_GATA2_02_M00348 TRANSFAC - 38025788 38025797 8.0E-06 TGAGATAAGA 10 TAL1_TCF3_MA0091.1 JASPAR - 38026340 38026351 1.0E-05 CAAACATCTGCT 12 V_ARNT_02_M00539 TRANSFAC + 38019957 38019976 6.0E-06 GGTTAAACACGTGACTACTC 20 V_ARNT_02_M00539 TRANSFAC - 38019957 38019976 6.0E-06 GAGTAGTCACGTGTTTAACC 20 V_BCL6_01_M01183 TRANSFAC - 38026383 38026398 9.0E-06 ATTATAGAAAATCTTT 16 V_IK_Q5_M01169 TRANSFAC + 38020081 38020090 3.0E-06 TTTGGGAGGC 10 V_GABP_B_M00341 TRANSFAC - 38019913 38019924 8.0E-06 CCCGGAAGCGGA 12 V_SP1_Q6_01_M00931 TRANSFAC - 38022462 38022471 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC - 38026387 38026408 9.0E-06 GCACATGCTTATTATAGAAAAT 22 V_IRF_Q6_01_M00972 TRANSFAC - 38024298 38024308 6.0E-06 AGAAATGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 38024295 38024310 1.0E-06 GAAGAAATGAAAGGAA 16 V_FOXJ1_03_M02750 TRANSFAC + 38026878 38026893 5.0E-06 GCTGTAAACAAACCAG 16 V_GKLF_02_M01588 TRANSFAC - 38019980 38019991 8.0E-06 GCCACACCCACT 12 V_PITX2_Q6_M02114 TRANSFAC + 38020067 38020076 1.0E-06 TGTAATCCCA 10 V_LYF1_01_M00141 TRANSFAC + 38020081 38020089 9.0E-06 TTTGGGAGG 9 V_LYF1_01_M00141 TRANSFAC - 38023865 38023873 9.0E-06 TTTGGGAAA 9 V_HELIOSA_01_M01003 TRANSFAC - 38026255 38026265 9.0E-06 TGTAGGGAAAA 11 V_LXRB_RXRA_Q5_M02021 TRANSFAC + 38020108 38020122 1.0E-06 TGAGGTCAGGAGTTA 15 V_ELF4_04_M02850 TRANSFAC + 38020025 38020041 1.0E-06 GTTTCAAAAACAAACTT 17 V_ELF4_04_M02850 TRANSFAC + 38020026 38020042 1.0E-06 TTTCAAAAACAAACTTC 17 V_TAL1_Q6_M00993 TRANSFAC + 38026368 38026377 3.0E-06 TCCATCTGTT 10 V_GC_01_M00255 TRANSFAC - 38026267 38026280 0.0E+00 AAGAGGCGGGGCTG 14 V_TCF3_04_M02816 TRANSFAC - 38023794 38023810 9.0E-06 GAGTGATCAAAAGGAAT 17 V_FREAC3_01_M00291 TRANSFAC + 38026876 38026891 2.0E-06 GTGCTGTAAACAAACC 16 V_FOXO1_02_M00474 TRANSFAC - 38026878 38026891 2.0E-06 GGTTTGTTTACAGC 14 V_SP4_03_M02810 TRANSFAC - 38022512 38022528 2.0E-06 GAAACCGCCCCCTCACT 17 V_RSRFC4_Q2_M00407 TRANSFAC - 38026388 38026404 9.0E-06 ATGCTTATTATAGAAAA 17 V_EGR1_Q6_M01873 TRANSFAC + 38022501 38022510 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC + 38024294 38024308 3.0E-06 GTTCCTTTCATTTCT 15 V_MEF2_03_M00232 TRANSFAC - 38026387 38026408 3.0E-06 GCACATGCTTATTATAGAAAAT 22 V_ASCL2_03_M02737 TRANSFAC - 38022559 38022575 4.0E-06 CCCAGCAGCTGCCCTGT 17 V_USF_02_M00122 TRANSFAC + 38019960 38019973 1.0E-06 TAAACACGTGACTA 14 V_USF_02_M00122 TRANSFAC - 38019960 38019973 1.0E-06 TAGTCACGTGTTTA 14 V_OCT1_04_M00138 TRANSFAC - 38026390 38026412 8.0E-06 ATTAGCACATGCTTATTATAGAA 23 V_IK2_01_M00087 TRANSFAC - 38023863 38023874 4.0E-06 ATTTGGGAAAGA 12 V_ZIC3_05_M02941 TRANSFAC + 38023809 38023823 8.0E-06 TCTCACAGCATGTGT 15 V_GATA1_09_M02254 TRANSFAC - 38025787 38025797 8.0E-06 TGAGATAAGAG 11 V_TCF7_03_M02817 TRANSFAC - 38023794 38023810 5.0E-06 GAGTGATCAAAAGGAAT 17 V_OCAB_Q6_M02113 TRANSFAC + 38026605 38026615 7.0E-06 ATCTGCAAACC 11 V_KLF7_03_M02773 TRANSFAC + 38022459 38022474 3.0E-06 TTGGCCCCGCCCCACT 16 V_ATF1_04_M02842 TRANSFAC + 38019888 38019901 5.0E-06 AAATGACGAGTTTA 14 V_FOXO1_Q5_M01216 TRANSFAC + 38020030 38020038 1.0E-06 AAAAACAAA 9 V_FOXO1_Q5_M01216 TRANSFAC - 38026372 38026380 1.0E-05 AAAAACAGA 9 V_IRF7_01_M00453 TRANSFAC - 38023850 38023867 7.0E-06 AAAGAATTTGAAGGTGGA 18 V_GATA4_Q3_M00632 TRANSFAC - 38025784 38025795 8.0E-06 AGATAAGAGAAA 12 V_USF_Q6_01_M00796 TRANSFAC + 38019961 38019972 1.0E-06 AAACACGTGACT 12 V_ZIC2_05_M02940 TRANSFAC + 38023809 38023823 1.0E-06 TCTCACAGCATGTGT 15 V_ALPHACP1_01_M00687 TRANSFAC - 38026582 38026592 7.0E-06 GAGCCAATGAG 11 V_MTF1_06_M02882 TRANSFAC - 38026375 38026388 6.0E-06 ATCTTTGAAAAAAC 14 V_NFYC_Q5_M02107 TRANSFAC - 38026579 38026592 9.0E-06 GAGCCAATGAGACT 14 V_MAX_01_M00119 TRANSFAC + 38019960 38019973 3.0E-06 TAAACACGTGACTA 14 V_MAX_01_M00119 TRANSFAC - 38019960 38019973 3.0E-06 TAGTCACGTGTTTA 14 V_SIRT6_01_M01797 TRANSFAC - 38025788 38025795 7.0E-06 AGATAAGA 8 V_GATA3_02_M00350 TRANSFAC - 38025788 38025797 5.0E-06 TGAGATAAGA 10 V_TCF7_04_M02921 TRANSFAC - 38026388 38026402 8.0E-06 GCTTATTATAGAAAA 15 V_MECP2_02_M01299 TRANSFAC - 38019495 38019504 9.0E-06 CCGGACTTAA 10 V_PITX2_Q2_M00482 TRANSFAC + 38020067 38020077 1.0E-06 TGTAATCCCAG 11 V_EGR1_06_M02744 TRANSFAC - 38022498 38022511 2.0E-06 CCCGCCCCCGCGCT 14 V_EGR1_06_M02744 TRANSFAC - 38022512 38022525 1.0E-06 ACCGCCCCCTCACT 14 V_LXRA_RXRA_Q3_M00647 TRANSFAC + 38020106 38020120 2.0E-06 ACTGAGGTCAGGAGT 15 V_GATA2_03_M00349 TRANSFAC - 38025788 38025797 3.0E-06 TGAGATAAGA 10 V_GATA2_03_M00349 TRANSFAC - 38026240 38026249 9.0E-06 AGAGATCAGA 10 V_SRF_06_M02916 TRANSFAC + 38020025 38020041 2.0E-06 GTTTCAAAAACAAACTT 17 V_SRF_06_M02916 TRANSFAC + 38020026 38020042 5.0E-06 TTTCAAAAACAAACTTC 17 V_SRF_06_M02916 TRANSFAC - 38026370 38026386 9.0E-06 CTTTGAAAAAACAGATG 17 V_EFC_Q6_M00626 TRANSFAC - 38022525 38022538 2.0E-06 CGTCACCATGGAAA 14 V_EKLF_Q5_M01874 TRANSFAC - 38019981 38019990 9.0E-06 CCACACCCAC 10 V_FOXO1_01_M00473 TRANSFAC + 38020029 38020038 4.0E-06 CAAAAACAAA 10 V_FOXO4_01_M00472 TRANSFAC + 38020030 38020040 3.0E-06 AAAAACAAACT 11 V_FOXO4_01_M00472 TRANSFAC + 38026881 38026891 4.0E-06 GTAAACAAACC 11 V_CMAF_01_M01070 TRANSFAC + 38026925 38026943 2.0E-06 AGTCTTGCTGACTGTGCTA 19 V_GFI1_Q6_01_M02010 TRANSFAC + 38019832 38019841 2.0E-06 CTGTGATTTT 10 V_BRF1_01_M01747 TRANSFAC - 38023775 38023787 1.0E-05 TGGTTTGAGTCCC 13 V_EVI1_03_M00080 TRANSFAC - 38025785 38025795 6.0E-06 AGATAAGAGAA 11 V_FOXK1_03_M02752 TRANSFAC + 38026876 38026892 1.0E-05 GTGCTGTAAACAAACCA 17 V_RFX1_02_M00281 TRANSFAC - 38022522 38022539 8.0E-06 CCGTCACCATGGAAACCG 18 V_DMRT5_01_M01150 TRANSFAC - 38026227 38026241 1.0E-06 GACTGTTACTGTGTC 15 V_ZIC1_05_M02939 TRANSFAC + 38023809 38023823 2.0E-06 TCTCACAGCATGTGT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.