Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF223 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7766 zinc finger protein 223 chr19 + 44551163 - 44556663 44556163 Transcription Factor Binding Sites   Download all TFBS in the ZNF223 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_16_1 SELEX - 44556024 44556039 8.0E-06 CAAAATACCCAGTGTT 16 FLI1_ETS_full_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 ERG_ETS_full_monomeric_10_1 SELEX - 44556174 44556183 1.0E-06 ACCGGAAGTG 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 1.0E-06 ACCGGAAGTG 10 FEV_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 SRY_HMG_DBD_dimeric_16_1 SELEX - 44556024 44556039 7.0E-06 CAAAATACCCAGTGTT 16 ETV1_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 STAT1_MA0137.2 JASPAR - 44555970 44555984 2.0E-06 CTCTTCCCAGAATTC 15 STAT1_MA0137.2 JASPAR - 44555991 44556005 3.0E-06 CACTTCCCGTAAAAT 15 TEAD1_TEA_full_monomeric_10_1 SELEX - 44556540 44556549 9.0E-06 AACATTCCAC 10 ETV2_ETS_DBD_monomeric_11_1 SELEX - 44556174 44556184 1.0E-05 GACCGGAAGTG 11 CUX1_CUT_DBD_dimeric_18_1 SELEX - 44556612 44556629 9.0E-06 TTCAATTCGCAAAACAAT 18 ELF3_ETS_full_monomeric_13_1 SELEX - 44555489 44555501 9.0E-06 CAGCAGGAAGTGA 13 ETS1_ETS_full_monomeric_10_1 SELEX - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 ETV4_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 4.0E-06 ACCGGAAGTG 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 znf143_MA0088.1 JASPAR - 44555965 44555984 9.0E-06 CTCTTCCCAGAATTCTCCGG 20 znf143_MA0088.1 JASPAR - 44556055 44556074 1.0E-06 TCGTTCCCAGAATTCAACGG 20 znf143_MA0088.1 JASPAR - 44556126 44556145 5.0E-06 CACTCCCCAGAATTCCCCGG 20 ELK4_MA0076.1 JASPAR - 44556175 44556183 4.0E-06 ACCGGAAGT 9 SOX7_HMG_full_dimeric_16_1 SELEX - 44556024 44556039 6.0E-06 CAAAATACCCAGTGTT 16 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 44556056 44556071 2.0E-06 TTCCCAGAATTCAACG 16 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 44556541 44556548 1.0E-05 ACATTCCA 8 ERF_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 1.0E-06 ACCGGAAGTG 10 ELK1_ETS_full_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 44556302 44556318 1.0E-06 TTTTCCCCTGAGACGAT 17 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 44555991 44556001 1.0E-05 TCCCGTAAAAT 11 HNF4A_MA0114.1 JASPAR - 44556472 44556484 3.0E-06 AGGTCAAAGTCCT 13 ELF1_ETS_full_monomeric_12_1 SELEX - 44556174 44556185 9.0E-06 AGACCGGAAGTG 12 GABPA_ETS_full_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 Elk3_ETS_DBD_monomeric_10_1 SELEX - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 ETV6_ETS_full_monomeric_10_1 SELEX - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 44556540 44556549 8.0E-06 AACATTCCAC 10 RORA_1_MA0071.1 JASPAR - 44555371 44555380 2.0E-06 ATCTAGGTCA 10 RORA_2_MA0072.1 JASPAR - 44555370 44555383 4.0E-06 AGGATCTAGGTCAG 14 V_ERG_03_M02062 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_ERM_01_M01992 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_SAP1A_01_M01167 TRANSFAC - 44556174 44556184 3.0E-06 GACCGGAAGTG 11 V_ELK1_04_M01165 TRANSFAC - 44556174 44556184 1.0E-06 GACCGGAAGTG 11 V_EBF_Q6_M00977 TRANSFAC - 44556306 44556316 3.0E-06 TTCCCCTGAGA 11 V_FLI1_Q6_M01208 TRANSFAC - 44555488 44555498 2.0E-06 CAGGAAGTGAG 11 V_HSF1_Q6_M01023 TRANSFAC + 44555962 44555978 3.0E-06 TTTCCGGAGAATTCTGG 17 V_GABPA_02_M02074 TRANSFAC - 44556174 44556183 8.0E-06 ACCGGAAGTG 10 V_SREBP2_Q6_M01177 TRANSFAC - 44556435 44556446 8.0E-06 AGGCCACCCCAA 12 V_STAT3STAT3_Q3_M01220 TRANSFAC + 44555993 44556006 7.0E-06 TTTACGGGAAGTGT 14 V_COE1_Q6_M01871 TRANSFAC + 44556306 44556319 8.0E-06 TCTCAGGGGAAAAG 14 V_CETS1_01_M01986 TRANSFAC - 44556174 44556183 4.0E-06 ACCGGAAGTG 10 V_ETS_B_M00340 TRANSFAC - 44555487 44555500 8.0E-06 AGCAGGAAGTGAGC 14 V_ETV3_01_M01990 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_GABP_B_M00341 TRANSFAC + 44555996 44556007 9.0E-06 ACGGGAAGTGTA 12 V_NFAT3_Q3_M01734 TRANSFAC + 44555886 44555895 3.0E-06 ACATTTTCCT 10 V_SOX11_04_M02899 TRANSFAC + 44556609 44556622 5.0E-06 AGAATTGTTTTGCG 14 V_STAT5B_01_M00459 TRANSFAC + 44555970 44555984 8.0E-06 GAATTCTGGGAAGAG 15 V_MYB_05_M02779 TRANSFAC + 44556048 44556064 7.0E-06 AGGTGAACCGTTGAATT 17 V_HNF4A_03_M02220 TRANSFAC - 44556472 44556484 3.0E-06 AGGTCAAAGTCCT 13 V_NERF_Q2_M00531 TRANSFAC - 44555484 44555501 1.0E-06 CAGCAGGAAGTGAGCGGC 18 V_CETS2_02_M02064 TRANSFAC - 44556174 44556183 6.0E-06 ACCGGAAGTG 10 V_PEA3_01_M01991 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_STAT4_Q4_M01666 TRANSFAC - 44556058 44556071 0.0E+00 TTCCCAGAATTCAA 14 V_REX1_01_M01695 TRANSFAC + 44555342 44555351 2.0E-06 TCAGCCATTA 10 V_FLI1_01_M02038 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_ELK1_06_M02059 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_HELIOSA_02_M01004 TRANSFAC - 44555888 44555898 1.0E-06 AAAAGGAAAAT 11 V_IPF1_Q4_M00436 TRANSFAC + 44556203 44556214 1.0E-06 GCTTTAATGACC 12 V_PR_Q2_M00960 TRANSFAC - 44556572 44556581 9.0E-06 TAAAGAACAG 10 V_ELK1_05_M01981 TRANSFAC - 44556174 44556183 5.0E-06 ACCGGAAGTG 10 V_SAP1A_02_M01983 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_FLI1_02_M02073 TRANSFAC - 44556174 44556183 5.0E-06 ACCGGAAGTG 10 V_PET1_02_M02072 TRANSFAC - 44556174 44556183 6.0E-06 ACCGGAAGTG 10 V_STAF_01_M00262 TRANSFAC - 44555962 44555983 7.0E-06 TCTTCCCAGAATTCTCCGGAAA 22 V_STAF_01_M00262 TRANSFAC - 44556052 44556073 3.0E-06 CGTTCCCAGAATTCAACGGTTC 22 V_NFAT_Q6_M00302 TRANSFAC - 44555887 44555898 4.0E-06 AAAAGGAAAATG 12 V_ERF_01_M01984 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_SP4_03_M02810 TRANSFAC - 44556111 44556127 7.0E-06 GGACCCGCCCCCCTGAG 17 V_STAT1_01_M00224 TRANSFAC + 44555813 44555833 7.0E-06 TGGGTGTTGCGGGAAGTGTAA 21 V_STAT1_01_M00224 TRANSFAC + 44555988 44556008 4.0E-06 TCCATTTTACGGGAAGTGTAG 21 V_HOXA3_07_M02869 TRANSFAC - 44556602 44556615 9.0E-06 CAATTCTATTAGGA 14 V_ER81_02_M02065 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_ERG_01_M01752 TRANSFAC - 44556175 44556183 4.0E-06 ACCGGAAGT 9 V_GABPA_01_M02039 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_CETS2_01_M01989 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_GADP_01_M01258 TRANSFAC + 44556174 44556185 2.0E-06 CACTTCCGGTCT 12 V_PET1_01_M02037 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_GRE_C_M00205 TRANSFAC - 44556244 44556259 1.0E-06 CGTTCAAAATGTCCTG 16 V_TEL2_Q6_M00678 TRANSFAC + 44555489 44555498 4.0E-06 TCACTTCCTG 10 V_ZIC3_05_M02941 TRANSFAC - 44555492 44555506 4.0E-06 CGGCACAGCAGGAAG 15 V_CDP_02_M00102 TRANSFAC + 44556292 44556306 1.0E-05 ATGATCGATGATCGT 15 V_CETS1P54_01_M00032 TRANSFAC - 44556174 44556183 5.0E-06 ACCGGAAGTG 10 V_PEA3_02_M02066 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_STAT3_03_M01595 TRANSFAC + 44555971 44555986 6.0E-06 AATTCTGGGAAGAGTA 16 V_ERF_02_M02061 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_ISGF4G_04_M02875 TRANSFAC - 44556608 44556621 2.0E-06 GCAAAACAATTCTA 14 V_ER71_01_M01988 TRANSFAC - 44556174 44556183 5.0E-06 ACCGGAAGTG 10 V_NET_01_M01982 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_ER81_01_M01987 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_NEUROD_02_M01288 TRANSFAC + 44555493 44555504 1.0E-06 TTCCTGCTGTGC 12 V_HBP1_04_M02866 TRANSFAC - 44555394 44555410 3.0E-06 GGATCCTATTGTGAACT 17 V_ZFP105_04_M02931 TRANSFAC + 44555712 44555728 2.0E-06 TCTATTCAATATTTTCG 17 V_ZIC2_05_M02940 TRANSFAC - 44555492 44555506 7.0E-06 CGGCACAGCAGGAAG 15 V_ERM_02_M02069 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_IPF1_05_M01255 TRANSFAC - 44556545 44556556 4.0E-06 AGACATTAACAT 12 V_FOXJ3_06_M02855 TRANSFAC - 44556609 44556625 7.0E-06 ATTCGCAAAACAATTCT 17 V_TEF1_Q6_03_M01817 TRANSFAC + 44556540 44556548 6.0E-06 GTGGAATGT 9 V_NRF2_01_M00108 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_HNF1B_01_M01425 TRANSFAC + 44555125 44555141 7.0E-06 TCTTGTTAACTGGACGT 17 V_STAT_01_M00223 TRANSFAC - 44555994 44556002 7.0E-06 TTCCCGTAA 9 V_SAP1A_03_M02058 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_CETS1_02_M02063 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_IPF1_Q4_01_M01013 TRANSFAC + 44555342 44555356 1.0E-06 TCAGCCATTAGATTC 15 V_SOX1_03_M02802 TRANSFAC + 44555710 44555725 0.0E+00 TTTCTATTCAATATTT 16 V_SOX1_03_M02802 TRANSFAC - 44556603 44556618 9.0E-06 AAACAATTCTATTAGG 16 V_NET_02_M02060 TRANSFAC - 44556174 44556183 4.0E-06 ACCGGAAGTG 10 V_ERG_02_M01985 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_SOX5_07_M02909 TRANSFAC + 44556606 44556622 5.0E-06 AATAGAATTGTTTTGCG 17 V_ELK1_03_M01163 TRANSFAC - 44556174 44556184 1.0E-06 GACCGGAAGTG 11 V_STAT1_05_M01260 TRANSFAC + 44555970 44555991 5.0E-06 GAATTCTGGGAAGAGTAGTCCA 22 V_STAT1_05_M01260 TRANSFAC + 44555991 44556012 4.0E-06 ATTTTACGGGAAGTGTAGTCCA 22 V_ER71_02_M02067 TRANSFAC - 44556174 44556183 3.0E-06 ACCGGAAGTG 10 V_RORA2_01_M00157 TRANSFAC - 44555158 44555170 9.0E-06 AAAAGTAGATCAG 13 V_RORA2_01_M00157 TRANSFAC - 44555370 44555382 4.0E-06 GGATCTAGGTCAG 13 V_PPARA_01_M00242 TRANSFAC - 44556472 44556491 6.0E-06 CTGAGCGAGGTCAAAGTCCT 20 V_ZIC1_05_M02939 TRANSFAC - 44555492 44555506 3.0E-06 CGGCACAGCAGGAAG 15 V_ETV3_02_M02068 TRANSFAC - 44556174 44556183 2.0E-06 ACCGGAAGTG 10 V_HSF1_Q6_01_M02017 TRANSFAC + 44555968 44555981 4.0E-06 GAGAATTCTGGGAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.