Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF84 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7637 zinc finger protein 84 chr12 + 133608877 - 133614479 133613979 Transcription Factor Binding Sites   Download all TFBS in the ZNF84 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 133613708 133613725 3.0E-06 CAAGAAAATATATATATA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 133613708 133613725 7.0E-06 TATATATATATTTTCTTG 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 133613712 133613729 5.0E-06 AAAATATATATATATATT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 133613712 133613729 6.0E-06 AATATATATATATATTTT 18 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 133614591 133614603 2.0E-06 ATAAATATAACCA 13 GABPA_MA0062.2 JASPAR - 133613806 133613816 3.0E-06 CCGGAAGTGCC 11 TBX1_TBX_DBD_dimeric_20_2 SELEX + 133613754 133613773 3.0E-06 TTCTCAGAAAACCGTGTGAG 20 IRF7_IRF_DBD_dimeric_14_1 SELEX - 133614628 133614641 6.0E-06 CCAAAAGCAAAAGT 14 SPIC_ETS_full_monomeric_14_1 SELEX - 133613906 133613919 0.0E+00 ACAAAGAGGAAGAA 14 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 133614591 133614607 2.0E-06 GTCAATAAATATAACCA 17 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 133614608 133614624 6.0E-06 TTAAAAAATTTAAAACA 17 FOXL1_forkhead_full_dimeric_13_1 SELEX - 133614596 133614608 1.0E-06 AGTCAATAAATAT 13 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 6.0E-06 GTCACGTGAT 10 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 133613710 133613723 3.0E-06 AGAAAATATATATA 14 Pax4_MA0068.1 JASPAR - 133614593 133614622 0.0E+00 AAAAAATTTAAAACAGTCAATAAATATAAC 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 133613906 133613919 7.0E-06 ACAAAGAGGAAGAA 14 IRF1_MA0050.1 JASPAR - 133614628 133614639 1.0E-05 AAAAGCAAAAGT 12 USF1_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 2.0E-06 GTCACGTGAT 10 USF1_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 133614597 133614607 2.0E-06 GTCAATAAATA 11 TCF4_bHLH_full_dimeric_10_1 SELEX - 133614551 133614560 3.0E-06 CACACCTGTA 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 133614076 133614085 3.0E-06 GTCACGTGAT 10 BHLHE41_bHLH_full_dimeric_10_1 SELEX - 133614076 133614085 2.0E-06 ATCACGTGAC 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 2.0E-06 GTCACGTGAT 10 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 FOXI1_MA0042.1 JASPAR + 133614594 133614605 7.0E-06 TTATATTTATTG 12 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 2.0E-06 GTCACGTGAT 10 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 TFEB_bHLH_full_dimeric_10_1 SELEX + 133614076 133614085 5.0E-06 GTCACGTGAT 10 TFEB_bHLH_full_dimeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 133614597 133614607 4.0E-06 GTCAATAAATA 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 133614584 133614593 8.0E-06 CCATTAAAAA 10 ZSCAN4_C2H2_full_monomeric_15_1 SELEX - 133613944 133613958 9.0E-06 CGCACACGCGTACAC 15 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 133613820 133613835 1.0E-06 TTCCCACAGTGCCCCG 16 IRF9_IRF_full_trimeric_15_1 SELEX - 133613733 133613747 6.0E-06 AGGGAAACCGAATCC 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 133614626 133614640 8.0E-06 CAAAAGCAAAAGTCA 15 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 133613710 133613723 7.0E-06 AGAAAATATATATA 14 MLXIPL_bHLH_full_dimeric_10_1 SELEX + 133614076 133614085 1.0E-06 GTCACGTGAT 10 MLXIPL_bHLH_full_dimeric_10_1 SELEX - 133614076 133614085 5.0E-06 ATCACGTGAC 10 MAX_MA0058.1 JASPAR - 133614077 133614086 8.0E-06 GATCACGTGA 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 9.0E-06 GTCACGTGAT 10 TFE3_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 1.0E-06 ATCACGTGAC 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 4.0E-06 GTCACGTGAT 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 2.0E-06 ATCACGTGAC 10 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 133614134 133614149 0.0E+00 GAGTTCAGTGAGTTTA 16 SPI1_ETS_full_monomeric_14_1 SELEX - 133613906 133613919 7.0E-06 ACAAAGAGGAAGAA 14 IRF3_IRF_full_trimeric_21_1 SELEX - 133613732 133613752 0.0E+00 CATAAAGGGAAACCGAATCCA 21 MLX_bHLH_full_dimeric_10_1 SELEX + 133614076 133614085 1.0E-06 GTCACGTGAT 10 MLX_bHLH_full_dimeric_10_1 SELEX - 133614076 133614085 2.0E-06 ATCACGTGAC 10 NRF1_NRF_full_dimeric_12_1 SELEX + 133613861 133613872 0.0E+00 CGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 133613861 133613872 1.0E-06 TGCGCATGCGCG 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 133613709 133613721 4.0E-06 AAGAAAATATATA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 133614597 133614609 5.0E-06 CAGTCAATAAATA 13 FOXL1_MA0033.1 JASPAR + 133613716 133613723 9.0E-06 TATATATA 8 FOXL1_MA0033.1 JASPAR - 133613716 133613723 9.0E-06 TATATATA 8 FOXL1_MA0033.1 JASPAR + 133613718 133613725 9.0E-06 TATATATA 8 FOXL1_MA0033.1 JASPAR - 133613718 133613725 9.0E-06 TATATATA 8 FOXL1_MA0033.1 JASPAR + 133613720 133613727 9.0E-06 TATATATA 8 FOXL1_MA0033.1 JASPAR - 133613720 133613727 9.0E-06 TATATATA 8 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 133614591 133614603 3.0E-06 ATAAATATAACCA 13 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 133614076 133614085 2.0E-06 GTCACGTGAT 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX - 133614076 133614085 3.0E-06 ATCACGTGAC 10 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 133614076 133614085 3.0E-06 ATCACGTGAC 10 V_HOXA9_01_M01351 TRANSFAC - 133614581 133614597 6.0E-06 ATAACCATTAAAAAATA 17 V_FOXP1_01_M00987 TRANSFAC - 133613709 133613728 9.0E-06 ATATATATATATATTTTCTT 20 V_FOXP1_01_M00987 TRANSFAC + 133614594 133614613 2.0E-06 TTATATTTATTGACTGTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC - 133614582 133614594 8.0E-06 ACCATTAAAAAAT 13 V_SPI1_01_M01203 TRANSFAC - 133613903 133613919 6.0E-06 ACAAAGAGGAAGAACGG 17 V_E2A_Q6_01_M02088 TRANSFAC - 133613891 133613903 1.0E-05 GGCCACCTGCAAG 13 V_STAT5A_Q6_M01890 TRANSFAC + 133613750 133613762 3.0E-06 ATGTTTCTCAGAA 13 V_STAT5A_Q6_M01890 TRANSFAC - 133613754 133613766 1.0E-06 GGTTTTCTGAGAA 13 V_DBX1_01_M01483 TRANSFAC - 133614581 133614597 7.0E-06 ATAACCATTAAAAAATA 17 V_DBX1_01_M01483 TRANSFAC - 133614607 133614623 5.0E-06 TAAAAAATTTAAAACAG 17 V_FREAC7_01_M00293 TRANSFAC - 133614593 133614608 9.0E-06 AGTCAATAAATATAAC 16 V_USF_Q6_M00187 TRANSFAC + 133614076 133614085 7.0E-06 GTCACGTGAT 10 V_CDX2_Q5_01_M01659 TRANSFAC - 133614596 133614606 2.0E-06 TCAATAAATAT 11 V_FOXA2_04_M02749 TRANSFAC - 133614596 133614612 6.0E-06 AAACAGTCAATAAATAT 17 V_ZFX_01_M01593 TRANSFAC + 133614086 133614101 7.0E-06 CGCGAGGCCGCGGGCG 16 V_ARNT_02_M00539 TRANSFAC + 133614071 133614090 5.0E-06 GCGGTGTCACGTGATCGCGA 20 V_ARNT_02_M00539 TRANSFAC - 133614071 133614090 5.0E-06 TCGCGATCACGTGACACCGC 20 V_HMGIY_Q3_M01010 TRANSFAC + 133614610 133614624 1.0E-06 TTTTAAATTTTTTAA 15 V_BCL6_01_M01183 TRANSFAC - 133613712 133613727 7.0E-06 TATATATATATATTTT 16 V_MMEF2_Q6_M00405 TRANSFAC - 133614592 133614607 1.0E-06 GTCAATAAATATAACC 16 V_NKX25_Q6_M02108 TRANSFAC - 133614619 133614629 1.0E-05 GTCACTTAAAA 11 V_ARNT_01_M00236 TRANSFAC + 133614073 133614088 0.0E+00 GGTGTCACGTGATCGC 16 V_EAR2_Q2_M01728 TRANSFAC + 133613910 133613923 4.0E-06 TCCTCTTTGTCCTT 14 V_STAT5B_01_M00459 TRANSFAC + 133613751 133613765 6.0E-06 TGTTTCTCAGAAAAC 15 V_STAT5B_01_M00459 TRANSFAC - 133613751 133613765 7.0E-06 GTTTTCTGAGAAACA 15 V_NKX24_01_M01350 TRANSFAC - 133614617 133614632 8.0E-06 AAAGTCACTTAAAAAA 16 V_AIRE_02_M01000 TRANSFAC + 133614581 133614605 0.0E+00 TATTTTTTAATGGTTATATTTATTG 25 V_TCFAP2E_04_M02926 TRANSFAC - 133614581 133614594 9.0E-06 ACCATTAAAAAATA 14 V_CDX_Q5_M00991 TRANSFAC - 133613716 133613733 7.0E-06 CACCAATATATATATATA 18 V_STAT4_Q4_M01666 TRANSFAC + 133613754 133613767 8.0E-06 TTCTCAGAAAACCG 14 V_POU3F2_01_M00463 TRANSFAC - 133614590 133614603 6.0E-06 ATAAATATAACCAT 14 V_ZFP105_03_M02827 TRANSFAC - 133614581 133614595 1.0E-05 AACCATTAAAAAATA 15 V_HOXB13_01_M01467 TRANSFAC - 133614581 133614596 3.0E-06 TAACCATTAAAAAATA 16 V_SREBP1_01_M00220 TRANSFAC + 133614075 133614085 6.0E-06 TGTCACGTGAT 11 V_SREBP1_01_M00220 TRANSFAC - 133614076 133614086 1.0E-06 GATCACGTGAC 11 V_STAF_01_M00262 TRANSFAC - 133613816 133613837 0.0E+00 ACTTCCCACAGTGCCCCGCGTC 22 V_NKX61_01_M00424 TRANSFAC + 133614584 133614596 1.0E-06 TTTTTAATGGTTA 13 V_XFD3_01_M00269 TRANSFAC - 133614597 133614610 3.0E-06 ACAGTCAATAAATA 14 V_IRF2_01_M00063 TRANSFAC - 133614628 133614640 9.0E-06 CAAAAGCAAAAGT 13 V_AMEF2_Q6_M00403 TRANSFAC - 133614590 133614607 1.0E-06 GTCAATAAATATAACCAT 18 V_IRF3_Q3_M01279 TRANSFAC + 133613737 133613749 1.0E-06 TCGGTTTCCCTTT 13 V_IRF3_Q3_M01279 TRANSFAC + 133614626 133614638 1.0E-06 TGACTTTTGCTTT 13 V_NKX52_01_M01315 TRANSFAC - 133614616 133614632 2.0E-06 AAAGTCACTTAAAAAAT 17 V_OCT1_04_M00138 TRANSFAC + 133613707 133613729 3.0E-06 TCAAGAAAATATATATATATATT 23 V_OCT1_04_M00138 TRANSFAC + 133613709 133613731 5.0E-06 AAGAAAATATATATATATATTGG 23 V_OCT1_04_M00138 TRANSFAC + 133613713 133613735 5.0E-06 AAATATATATATATATTGGTGGA 23 V_OCT1_04_M00138 TRANSFAC + 133614582 133614604 7.0E-06 ATTTTTTAATGGTTATATTTATT 23 V_USF_01_M00121 TRANSFAC + 133614074 133614087 2.0E-06 GTGTCACGTGATCG 14 V_USF_01_M00121 TRANSFAC - 133614074 133614087 2.0E-06 CGATCACGTGACAC 14 V_SPIB_01_M01204 TRANSFAC - 133613903 133613919 4.0E-06 ACAAAGAGGAAGAACGG 17 V_MEF2_Q6_01_M00941 TRANSFAC + 133614592 133614603 1.0E-06 GGTTATATTTAT 12 V_NCX_02_M01420 TRANSFAC + 133614580 133614596 9.0E-06 GTATTTTTTAATGGTTA 17 V_NCX_02_M01420 TRANSFAC - 133614581 133614597 8.0E-06 ATAACCATTAAAAAATA 17 V_STAT4_Q5_M02117 TRANSFAC - 133613753 133613762 5.0E-06 TTCTGAGAAA 10 V_STAT4_Q5_M02117 TRANSFAC + 133613754 133613763 9.0E-06 TTCTCAGAAA 10 V_TBP_06_M02814 TRANSFAC + 133613710 133613725 1.0E-06 AGAAAATATATATATA 16 V_TBP_06_M02814 TRANSFAC - 133613710 133613725 8.0E-06 TATATATATATTTTCT 16 V_TBP_06_M02814 TRANSFAC + 133613712 133613727 0.0E+00 AAAATATATATATATA 16 V_TBP_06_M02814 TRANSFAC - 133613712 133613727 0.0E+00 TATATATATATATTTT 16 V_TBP_06_M02814 TRANSFAC + 133613714 133613729 0.0E+00 AATATATATATATATT 16 V_TBP_06_M02814 TRANSFAC - 133613714 133613729 0.0E+00 AATATATATATATATT 16 V_TBP_06_M02814 TRANSFAC + 133613716 133613731 1.0E-06 TATATATATATATTGG 16 V_TBP_06_M02814 TRANSFAC - 133613716 133613731 0.0E+00 CCAATATATATATATA 16 V_TBP_06_M02814 TRANSFAC - 133613718 133613733 1.0E-05 CACCAATATATATATA 16 V_TBP_06_M02814 TRANSFAC - 133614591 133614606 9.0E-06 TCAATAAATATAACCA 16 V_HOXD9_Q2_M01834 TRANSFAC - 133614586 133614595 8.0E-06 AACCATTAAA 10 V_USF_Q6_01_M00796 TRANSFAC - 133614075 133614086 5.0E-06 GATCACGTGACA 12 V_HOXB8_01_M01451 TRANSFAC - 133614595 133614610 9.0E-06 ACAGTCAATAAATATA 16 V_STRA13_01_M00985 TRANSFAC + 133614074 133614087 1.0E-06 GTGTCACGTGATCG 14 V_IPF1_05_M01255 TRANSFAC - 133614584 133614595 1.0E-06 AACCATTAAAAA 12 V_AREB6_02_M00413 TRANSFAC - 133614550 133614561 6.0E-06 TCACACCTGTAA 12 V_TFEB_01_M01768 TRANSFAC + 133614076 133614085 2.0E-06 GTCACGTGAT 10 V_TFEB_01_M01768 TRANSFAC - 133614076 133614085 2.0E-06 ATCACGTGAC 10 V_FOXL1_04_M02753 TRANSFAC + 133613712 133613728 1.0E-05 AAAATATATATATATAT 17 V_AIRE_01_M00999 TRANSFAC + 133613721 133613746 8.0E-06 ATATATATTGGTGGATTCGGTTTCCC 26 V_ZFP206_01_M01742 TRANSFAC + 133613861 133613871 2.0E-06 CGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 133613862 133613872 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 133614045 133614055 9.0E-06 CGCGCACGCGC 11 V_MTATA_B_M00320 TRANSFAC + 133614532 133614548 1.0E-05 GCTTTTAAAGCGCTGGG 17 V_STAT1STAT1_Q3_M01212 TRANSFAC + 133613752 133613764 1.0E-06 GTTTCTCAGAAAA 13 V_NRF1_Q6_M00652 TRANSFAC - 133613861 133613870 4.0E-06 CGCATGCGCG 10 V_NRF1_Q6_M00652 TRANSFAC + 133613863 133613872 2.0E-06 CGCATGCGCA 10 V_FOX_Q2_M00809 TRANSFAC + 133614594 133614606 5.0E-06 TTATATTTATTGA 13 V_TBX5_Q5_M01044 TRANSFAC - 133614553 133614562 3.0E-06 CTCACACCTG 10 V_HFH3_01_M00289 TRANSFAC + 133614594 133614606 2.0E-06 TTATATTTATTGA 13 V_FOXJ2_01_M00422 TRANSFAC - 133614592 133614609 4.0E-06 CAGTCAATAAATATAACC 18 V_HOXD8_01_M01432 TRANSFAC + 133614580 133614596 7.0E-06 GTATTTTTTAATGGTTA 17 V_SIX6_08_M02897 TRANSFAC + 133613712 133613728 1.0E-06 AAAATATATATATATAT 17 V_SIX6_08_M02897 TRANSFAC - 133613713 133613729 0.0E+00 AATATATATATATATTT 17 V_SIX6_08_M02897 TRANSFAC + 133613714 133613730 2.0E-06 AATATATATATATATTG 17 V_SIX6_08_M02897 TRANSFAC - 133613715 133613731 6.0E-06 CCAATATATATATATAT 17 V_RFX3_05_M02892 TRANSFAC - 133613785 133613807 5.0E-06 CCTGTCGCTTGGAGACGGAGTGA 23 V_IRF1_01_M00062 TRANSFAC - 133614628 133614640 1.0E-06 CAAAAGCAAAAGT 13 V_MEF2A_05_M01301 TRANSFAC + 133614592 133614603 1.0E-06 GGTTATATTTAT 12 V_UF1H3BETA_Q6_M01068 TRANSFAC + 133614181 133614194 2.0E-06 GGCGGGGGAGGCGC 14 V_HMX3_02_M01413 TRANSFAC - 133614616 133614632 2.0E-06 AAAGTCACTTAAAAAAT 17 V_ZFP128_04_M02932 TRANSFAC + 133613714 133613727 2.0E-06 AATATATATATATA 14 V_ZFP128_04_M02932 TRANSFAC - 133613714 133613727 1.0E-06 TATATATATATATT 14 V_ZFP128_04_M02932 TRANSFAC + 133613716 133613729 1.0E-06 TATATATATATATT 14 V_ZFP128_04_M02932 TRANSFAC - 133613716 133613729 2.0E-06 AATATATATATATA 14 V_HOXD10_01_M01375 TRANSFAC - 133614593 133614609 1.0E-05 CAGTCAATAAATATAAC 17 V_IRXB3_01_M01377 TRANSFAC + 133613712 133613728 7.0E-06 AAAATATATATATATAT 17 V_RNF96_01_M01199 TRANSFAC - 133614091 133614100 7.0E-06 GCCCGCGGCC 10 V_DTYPEPA_B_M00334 TRANSFAC - 133614585 133614594 3.0E-06 ACCATTAAAA 10 V_STAT1_05_M01260 TRANSFAC - 133613744 133613765 3.0E-06 GTTTTCTGAGAAACATAAAGGG 22 V_PAX4_04_M00380 TRANSFAC - 133614575 133614604 1.0E-06 AATAAATATAACCATTAAAAAATACACGGC 30 V_PAX4_04_M00380 TRANSFAC - 133614593 133614622 6.0E-06 AAAAAATTTAAAACAGTCAATAAATATAAC 30 V_PAX2_02_M00486 TRANSFAC - 133614143 133614151 2.0E-06 AATAAACTC 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.