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XPA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7507 xeroderma pigmentosum, complementation group A chr9 - 100459191 - 100464691 100459691 Transcription Factor Binding Sites   Download all TFBS in the XPA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX - 100463370 100463380 1.0E-06 GAGGTGTGAAG 11 Sox1_HMG_DBD_dimeric_14_1 SELEX + 100463310 100463323 5.0E-06 TGAAAATATATTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 100463310 100463323 5.0E-06 TGAATATATTTTCA 14 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 100459990 100459999 1.0E-06 CATAATTATC 10 Tp53_p53l_DBD_dimeric_18_1 SELEX + 100464468 100464485 0.0E+00 ACAAGACTAAAAACAGGT 18 SPIC_ETS_full_monomeric_14_1 SELEX + 100461849 100461862 3.0E-06 ACGAAGAGGAAGTA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 100459070 100459081 4.0E-06 TGCCAGGTGTCA 12 TBR1_TBX_DBD_monomeric_10_1 SELEX - 100463370 100463379 5.0E-06 AGGTGTGAAG 10 POU3F3_POU_DBD_monomeric_12_1 SELEX - 100463313 100463324 2.0E-06 ATGAATATATTT 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 100459983 100459997 5.0E-06 TAATTATCCTCATTT 15 TBX20_TBX_DBD_dimeric_19_1 SELEX + 100457232 100457250 7.0E-06 ATGTGTGAATCTCTCAGAT 19 TBX20_TBX_DBD_dimeric_19_1 SELEX - 100457232 100457250 3.0E-06 ATCTGAGAGATTCACACAT 19 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 100459070 100459081 3.0E-06 TGCCAGGTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 100459070 100459081 7.0E-06 TGCCAGGTGTCA 12 SPIB_ETS_DBD_monomeric_14_1 SELEX + 100461849 100461862 7.0E-06 ACGAAGAGGAAGTA 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 100463317 100463330 2.0E-06 ATATTCATCATTAG 14 TBX1_TBX_DBD_dimeric_19_1 SELEX + 100457232 100457250 5.0E-06 ATGTGTGAATCTCTCAGAT 19 RARG_nuclearreceptor_full_dimeric_18_1 SELEX - 100459925 100459942 8.0E-06 AAGGTCACACAGACTTTA 18 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 100459070 100459081 6.0E-06 TGCCAGGTGTCA 12 EOMES_TBX_DBD_monomeric_13_1 SELEX - 100463368 100463380 4.0E-06 GAGGTGTGAAGTG 13 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 100463297 100463307 9.0E-06 GCCAACAAACA 11 Rarb_nuclearreceptor_DBD_dimeric_17_1 SELEX - 100459925 100459941 8.0E-06 AGGTCACACAGACTTTA 17 ESR1_MA0112.2 JASPAR - 100459927 100459946 2.0E-06 GCCCAAGGTCACACAGACTT 20 SP1_MA0079.2 JASPAR + 100463453 100463462 9.0E-06 CCCCTCCTCC 10 TBR1_TBX_full_monomeric_11_1 SELEX - 100463370 100463380 5.0E-06 GAGGTGTGAAG 11 SOX9_HMG_full_dimeric_16_3 SELEX - 100457282 100457297 9.0E-06 ATGTACATTGAGTCAT 16 SOX9_HMG_full_dimeric_16_3 SELEX + 100461907 100461922 9.0E-06 ATGAATTAAGAGTCCT 16 SOX9_HMG_full_dimeric_16_3 SELEX + 100463309 100463324 4.0E-06 ATGAAAATATATTCAT 16 SOX9_HMG_full_dimeric_16_3 SELEX - 100463309 100463324 2.0E-06 ATGAATATATTTTCAT 16 TBX20_TBX_full_dimeric_16_1 SELEX - 100459062 100459077 3.0E-06 AGGTGTCAGGGCCTCA 16 TBX21_TBX_full_monomeric_10_1 SELEX - 100463371 100463380 3.0E-06 GAGGTGTGAA 10 TBX15_TBX_DBD_dimeric_19_1 SELEX - 100457232 100457250 6.0E-06 ATCTGAGAGATTCACACAT 19 TBX2_TBX_full_monomeric_11_1 SELEX - 100463370 100463380 6.0E-06 GAGGTGTGAAG 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 100461855 100461869 4.0E-06 AGGAAGTAAAAGTGT 15 POU3F1_POU_DBD_monomeric_12_2 SELEX - 100463313 100463324 5.0E-06 ATGAATATATTT 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 100459070 100459081 2.0E-06 TGCCAGGTGTCA 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 100459982 100459998 2.0E-06 AAAATGAGGATAATTAT 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 100459982 100459998 4.0E-06 ATAATTATCCTCATTTT 17 ZNF282_C2H2_DBD_monomeric_17_1 SELEX + 100464461 100464477 6.0E-06 TGTTCCCACAAGACTAA 17 ELF5_ETS_full_monomeric_11_1 SELEX + 100461852 100461862 6.0E-06 AAGAGGAAGTA 11 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 100459070 100459081 7.0E-06 TGCCAGGTGTCA 12 TBX20_TBX_DBD_monomeric_15_1 SELEX - 100463369 100463383 4.0E-06 CTGGAGGTGTGAAGT 15 IRF3_IRF_full_trimeric_21_1 SELEX + 100459366 100459386 9.0E-06 GGGAGAGGGAAGGGGAAAGCG 21 ETV6_ETS_full_dimeric_15_1 SELEX + 100461848 100461862 6.0E-06 CACGAAGAGGAAGTA 15 NRF1_NRF_full_dimeric_12_1 SELEX + 100459609 100459620 9.0E-06 CACGCACGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 100459694 100459705 1.0E-05 TGCGCAGGCGCT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 100459991 100460008 9.0E-06 ATAATTATGGAACCATTT 18 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 100459070 100459081 5.0E-06 TGCCAGGTGTCA 12 RREB1_MA0073.1 JASPAR + 100463436 100463455 7.0E-06 CCCCCTCCCACCACCATCCC 20 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 100459991 100459998 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 100459991 100459998 4.0E-06 ATAATTAT 8 RXR_RAR_DR5_MA0159.1 JASPAR - 100459925 100459941 9.0E-06 AGGTCACACAGACTTTA 17 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 100459918 100459931 9.0E-06 TGACAGTTAAAGTC 14 V_SPI1_01_M01203 TRANSFAC + 100461849 100461865 7.0E-06 ACGAAGAGGAAGTAAAA 17 V_GEN_INI_B_M00315 TRANSFAC - 100459983 100459990 1.0E-05 CCTCATTT 8 V_EBF_Q6_M00977 TRANSFAC + 100463600 100463610 0.0E+00 TTCCCTTGAGA 11 V_BTEB3_Q5_M01865 TRANSFAC - 100463713 100463725 1.0E-05 TTGTGGGAGGAGC 13 V_ESR1_01_M02261 TRANSFAC - 100459927 100459946 2.0E-06 GCCCAAGGTCACACAGACTT 20 V_SOX30_03_M02804 TRANSFAC - 100458946 100458961 7.0E-06 TTTCAACAATTAGAGT 16 V_DLX3_01_M01400 TRANSFAC - 100459987 100460003 7.0E-06 GTTCCATAATTATCCTC 17 V_SPIB_02_M02041 TRANSFAC + 100461853 100461862 1.0E-06 AGAGGAAGTA 10 V_TBR2_01_M01774 TRANSFAC - 100463371 100463379 3.0E-06 AGGTGTGAA 9 V_POU1F1_Q6_M00744 TRANSFAC - 100463315 100463324 1.0E-06 ATGAATATAT 10 V_FOXO3A_Q1_M01137 TRANSFAC + 100463310 100463321 9.0E-06 TGAAAATATATT 12 V_SP1_03_M02281 TRANSFAC + 100463453 100463462 9.0E-06 CCCCTCCTCC 10 V_TR4_Q2_M01725 TRANSFAC - 100463562 100463572 4.0E-06 AGTGACCTTTG 11 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC - 100463484 100463499 9.0E-06 CAGGATAAGGGGGTGG 16 V_PU1_Q4_M01172 TRANSFAC - 100461850 100461868 0.0E+00 CACTTTTACTTCCTCTTCG 19 V_LYF1_01_M00141 TRANSFAC + 100460017 100460025 9.0E-06 TTTGGGAGG 9 V_TCFAP2E_04_M02926 TRANSFAC + 100463306 100463319 8.0E-06 CACATGAAAATATA 14 V_HMGA2_01_M01300 TRANSFAC + 100459982 100459996 5.0E-06 AAAATGAGGATAATT 15 V_SPIC_01_M02042 TRANSFAC + 100461853 100461862 1.0E-06 AGAGGAAGTA 10 V_ZNF219_01_M01122 TRANSFAC + 100463479 100463490 1.0E-05 CTCCCCCACCCC 12 V_GEN_INI3_B_M00314 TRANSFAC - 100459983 100459990 1.0E-05 CCTCATTT 8 V_SPI1_03_M02078 TRANSFAC + 100461853 100461862 1.0E-06 AGAGGAAGTA 10 V_ZFP410_03_M02832 TRANSFAC - 100463501 100463517 9.0E-06 AAGGTTGGGATGGAGGA 17 V_HNF3G_Q4_M02015 TRANSFAC - 100458971 100458978 7.0E-06 TGTTTGTT 8 V_POLY_C_M00212 TRANSFAC + 100463415 100463432 5.0E-06 CAACAAACCCCCTCTCTC 18 V_AP1_Q6_01_M00925 TRANSFAC + 100457282 100457290 2.0E-06 ATGACTCAA 9 V_MAZ_Q6_01_M02023 TRANSFAC - 100463449 100463462 9.0E-06 GGAGGAGGGGATGG 14 V_AP2BETA_Q3_M01858 TRANSFAC + 100459164 100459179 8.0E-06 GCCCGGGGCTGGGGGT 16 V_EGR1_04_M02848 TRANSFAC - 100463431 100463446 7.0E-06 GTGGGAGGGGGACTGA 16 V_BCL6_Q3_M01171 TRANSFAC + 100459004 100459013 8.0E-06 AGTTCTAGGT 10 V_SOX18_03_M02801 TRANSFAC + 100458948 100458963 8.0E-06 TCTAATTGTTGAAAGC 16 V_SFPI1_04_M02896 TRANSFAC + 100459991 100460004 4.0E-06 ATAATTATGGAACC 14 V_ELF5_01_M01197 TRANSFAC + 100461852 100461862 6.0E-06 AAGAGGAAGTA 11 V_IRF3_06_M02871 TRANSFAC + 100459803 100459816 4.0E-06 GGAGAAGGGTCCGT 14 V_IRF3_06_M02871 TRANSFAC + 100463606 100463619 1.0E-06 TGAGAAAGGTGTTA 14 V_OCT1_04_M00138 TRANSFAC + 100463301 100463323 0.0E+00 ACAAACACATGAAAATATATTCA 23 V_OCT1_04_M00138 TRANSFAC - 100463310 100463332 1.0E-05 GACTAATGATGAATATATTTTCA 23 V_REX1_03_M01744 TRANSFAC - 100459566 100459577 9.0E-06 GAGATGGCGGCG 12 V_PITX3_01_M01343 TRANSFAC + 100460020 100460035 6.0E-06 GGGAGGATTAGATTGC 16 V_SPIB_01_M01204 TRANSFAC + 100461849 100461865 5.0E-06 ACGAAGAGGAAGTAAAA 17 V_ERALPHA_01_M01801 TRANSFAC + 100459927 100459941 6.0E-06 AAGTCTGTGTGACCT 15 V_ERALPHA_01_M01801 TRANSFAC - 100459927 100459941 8.0E-06 AGGTCACACAGACTT 15 V_MEF2_Q6_01_M00941 TRANSFAC - 100459847 100459858 3.0E-06 ACCTATTTTAAA 12 V_CDC5_01_M00478 TRANSFAC + 100461881 100461892 8.0E-06 GAGTTAAAAAAA 12 V_HNF4A_Q6_01_M02016 TRANSFAC + 100463559 100463573 8.0E-06 TGCCAAAGGTCACTC 15 V_SMAD4_Q6_M00733 TRANSFAC + 100459436 100459450 9.0E-06 GCCGGGCAGCCAGCC 15 V_IRX3_01_M01318 TRANSFAC + 100457289 100457305 1.0E-05 AATGTACATGAAGTTTG 17 V_NR1B1_Q6_M02110 TRANSFAC + 100463563 100463572 6.0E-06 AAAGGTCACT 10 V_TBX5_01_M01019 TRANSFAC + 100463610 100463621 5.0E-06 AAAGGTGTTAGG 12 V_AP1_Q2_01_M00924 TRANSFAC + 100457283 100457294 1.0E-06 TGACTCAATGTA 12 V_ELK1_01_M00007 TRANSFAC + 100461850 100461865 4.0E-06 CGAAGAGGAAGTAAAA 16 V_EN2_01_M01455 TRANSFAC + 100458945 100458961 5.0E-06 AACTCTAATTGTTGAAA 17 V_AP1_Q4_01_M00926 TRANSFAC - 100457282 100457289 1.0E-05 TGAGTCAT 8 V_TTF1_Q5_M02034 TRANSFAC + 100459911 100459924 9.0E-06 GAGCTCTTGACAGT 14 V_HAND1E47_01_M00222 TRANSFAC - 100457267 100457282 1.0E-05 TACAGTATCTGGCTTT 16 V_GABPBETA_Q3_M01876 TRANSFAC + 100461853 100461863 7.0E-06 AGAGGAAGTAA 11 V_EHF_06_M02745 TRANSFAC + 100461849 100461863 8.0E-06 ACGAAGAGGAAGTAA 15 V_NANOG_01_M01123 TRANSFAC + 100459999 100460010 4.0E-06 GGAACCATTTAC 12 V_PITX1_01_M01484 TRANSFAC + 100460018 100460034 9.0E-06 TTGGGAGGATTAGATTG 17 V_GEN_INI2_B_M00313 TRANSFAC - 100459983 100459990 1.0E-05 CCTCATTT 8 V_ERR2_01_M01589 TRANSFAC - 100459933 100459944 2.0E-06 CCAAGGTCACAC 12 V_ZFP206_01_M01742 TRANSFAC - 100459695 100459705 1.0E-06 TGCGCAGGCGC 11 V_MYB_Q5_01_M00913 TRANSFAC - 100459918 100459926 4.0E-06 TAACTGTCA 9 V_FRA1_Q5_M01267 TRANSFAC - 100457282 100457289 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 100463454 100463465 4.0E-06 GAAGGAGGAGGG 12 V_SPIC_02_M02077 TRANSFAC + 100461853 100461862 1.0E-06 AGAGGAAGTA 10 V_ZFP281_01_M01597 TRANSFAC - 100463482 100463492 5.0E-06 AGGGGGTGGGG 11 V_RXR_RAR_01_M02272 TRANSFAC - 100459925 100459941 9.0E-06 AGGTCACACAGACTTTA 17 V_RARA_03_M02787 TRANSFAC + 100463559 100463574 8.0E-06 TGCCAAAGGTCACTCC 16 V_ZFP281_04_M02831 TRANSFAC + 100463480 100463494 1.0E-05 TCCCCCACCCCCTTA 15 V_ERR1_Q2_01_M02093 TRANSFAC + 100463563 100463573 6.0E-06 AAAGGTCACTC 11 V_ARP1_01_M00155 TRANSFAC + 100459062 100459077 1.0E-06 TGAGGCCCTGACACCT 16 V_MEF2A_05_M01301 TRANSFAC - 100459847 100459858 2.0E-06 ACCTATTTTAAA 12 V_UF1H3BETA_Q6_M01068 TRANSFAC - 100463475 100463488 4.0E-06 GGTGGGGGAGCGGA 14 V_DMRT1_01_M01146 TRANSFAC + 100457246 100457260 1.0E-06 CAGATACTATGTTGC 15 V_GBX1_01_M01371 TRANSFAC - 100458945 100458961 1.0E-06 TTTCAACAATTAGAGTT 17 V_SPI1_02_M02043 TRANSFAC + 100461853 100461862 1.0E-06 AGAGGAAGTA 10 V_SPIB_03_M02076 TRANSFAC + 100461853 100461862 1.0E-06 AGAGGAAGTA 10 V_ER_Q6_M00191 TRANSFAC + 100459925 100459943 2.0E-06 TAAAGTCTGTGTGACCTTG 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.