Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

VIP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7432 vasoactive intestinal peptide chr6 + 153066931 - 153072431 153071931 Transcription Factor Binding Sites   Download all TFBS in the VIP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 153067460 153067473 9.0E-06 GTCAACAAATTGGC 14 FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 153067460 153067473 7.0E-06 GCCAATTTGTTGAC 14 HSF2_HSF_DBD_trimeric_13_1 SELEX + 153067622 153067634 0.0E+00 TTCTGGAATTTTC 13 HSF1_HSF_full_trimeric_13_1 SELEX + 153067622 153067634 0.0E+00 TTCTGGAATTTTC 13 STAT1_MA0137.2 JASPAR + 153070094 153070108 8.0E-06 CATTTCCTTGAAAGA 15 STAT1_MA0137.2 JASPAR + 153070597 153070611 1.0E-06 GATTTCCTGGAATTA 15 STAT1_MA0137.2 JASPAR - 153070597 153070611 1.0E-06 TAATTCCAGGAAATC 15 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 153067635 153067648 5.0E-06 CATTAATGTTTTCA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 153067635 153067648 1.0E-05 TGAAAACATTAATG 14 TEAD1_TEA_full_monomeric_10_1 SELEX - 153067368 153067377 1.0E-06 CACATTCCAT 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 153067635 153067648 5.0E-06 CATTAATGTTTTCA 14 POU6F2_POU_DBD_dimeric_16_1 SELEX + 153070581 153070596 1.0E-05 ATAATCAGGTAAAAAA 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 153070114 153070124 4.0E-06 AGAAATAAACA 11 HSF4_HSF_DBD_trimeric_13_1 SELEX + 153067622 153067634 0.0E+00 TTCTGGAATTTTC 13 FOXI1_MA0042.1 JASPAR - 153070116 153070127 1.0E-06 TTGTGTTTATTT 12 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 153067624 153067637 0.0E+00 ATGGAAAATTCCAG 14 BARHL2_homeodomain_full_monomeric_10_1 SELEX + 153067608 153067617 9.0E-06 AATAAATGGT 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 153067567 153067579 6.0E-06 GCATGATGAAATC 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 153067567 153067580 8.0E-06 AGCATGATGAAATC 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 153070093 153070109 5.0E-06 TTCTTTCAAGGAAATGA 17 SOX9_HMG_full_dimeric_16_3 SELEX + 153070433 153070448 3.0E-06 ATCATTCAGCAGTCAT 16 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 153070473 153070484 9.0E-06 AAACAGCAAAGC 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 153070114 153070124 8.0E-06 AGAAATAAACA 11 SOX7_HMG_full_dimeric_17_1 SELEX - 153070221 153070237 8.0E-06 AAACAACTGCATTTTCT 17 Gata1_MA0035.2 JASPAR + 153067694 153067704 8.0E-06 GCAGATAAGGG 11 Gata1_MA0035.2 JASPAR - 153070428 153070438 6.0E-06 AATGATAAGAA 11 POU3F1_POU_DBD_monomeric_12_1 SELEX - 153067729 153067740 8.0E-06 TTATGTATATGT 12 Foxd3_MA0041.1 JASPAR - 153067603 153067614 1.0E-05 ATTTATTTGCTT 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 153067369 153067376 1.0E-05 ACATTCCA 8 Stat3_MA0144.1 JASPAR - 153070599 153070608 1.0E-06 TTCCAGGAAA 10 IRF9_IRF_full_trimeric_15_1 SELEX + 153067679 153067693 2.0E-06 ATGGAAAGAGAAACT 15 FEV_MA0156.1 JASPAR - 153070598 153070605 1.0E-05 CAGGAAAT 8 FOXI1_forkhead_full_dimeric_17_1 SELEX + 153067373 153067389 1.0E-06 ATGTGTACAGTCATCTC 17 Sox11_HMG_DBD_dimeric_15_1 SELEX - 153070222 153070236 4.0E-06 AACAACTGCATTTTC 15 GLIS3_C2H2_DBD_monomeric_14_1 SELEX - 153067481 153067494 1.0E-05 TACCTCCCAGGTAG 14 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 153067368 153067377 1.0E-06 CACATTCCAT 10 REST_MA0138.2 JASPAR + 153072028 153072048 0.0E+00 TTCAGCACCTAAGACAGCTCC 21 IRF3_IRF_full_trimeric_21_1 SELEX + 153067674 153067694 7.0E-06 AAATCATGGAAAGAGAAACTG 21 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 153067603 153067615 4.0E-06 AAGCAAATAAATG 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 153070112 153070124 5.0E-06 GAAGAAATAAACA 13 FOXL1_MA0033.1 JASPAR + 153067732 153067739 5.0E-06 TATACATA 8 V_NFAT_Q4_01_M00935 TRANSFAC - 153067628 153067637 1.0E-06 ATGGAAAATT 10 V_FOXP1_01_M00987 TRANSFAC - 153070108 153070127 5.0E-06 TTGTGTTTATTTCTTCTTTT 20 V_CEBPG_Q6_M00622 TRANSFAC - 153067749 153067761 9.0E-06 CCTACTTCACAAT 13 V_STAT5A_Q6_M01890 TRANSFAC + 153070596 153070608 3.0E-06 AGATTTCCTGGAA 13 V_STAT3_01_M00225 TRANSFAC - 153070594 153070614 2.0E-06 GCTTAATTCCAGGAAATCTTT 21 V_FREAC7_01_M00293 TRANSFAC + 153070113 153070128 0.0E+00 AAGAAATAAACACAAT 16 V_FOXP3_Q4_M00992 TRANSFAC - 153072095 153072111 1.0E-06 GTAAAGTTTTCACTTAC 17 V_BCL6_Q3_01_M02085 TRANSFAC - 153070098 153070107 7.0E-06 CTTTCAAGGA 10 V_POU3F3_01_M03090 TRANSFAC + 153067728 153067744 2.0E-06 AACATATACATAAGAGA 17 V_GATA2_02_M00348 TRANSFAC - 153070429 153070438 3.0E-06 AATGATAAGA 10 V_FOXA2_04_M02749 TRANSFAC + 153067326 153067342 2.0E-06 ATATAGTAAACACAGAG 17 V_FOXA2_04_M02749 TRANSFAC + 153067600 153067616 5.0E-06 TTAAAGCAAATAAATGG 17 V_BCL6B_03_M02740 TRANSFAC - 153070093 153070108 5.0E-06 TCTTTCAAGGAAATGA 16 V_BCL6B_03_M02740 TRANSFAC + 153070597 153070612 9.0E-06 GATTTCCTGGAATTAA 16 V_HMGIY_Q3_M01010 TRANSFAC + 153067623 153067637 7.0E-06 TCTGGAATTTTCCAT 15 V_HMGIY_Q3_M01010 TRANSFAC + 153070183 153070197 1.0E-05 TTTTCAAATTGTTTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 153070218 153070232 3.0E-06 ACTGCATTTTCTCTT 15 V_FOXD3_01_M00130 TRANSFAC - 153067603 153067614 9.0E-06 ATTTATTTGCTT 12 V_BCL6_01_M01183 TRANSFAC + 153067631 153067646 1.0E-06 TTTCCATTAATGTTTT 16 V_BCL6_01_M01183 TRANSFAC + 153070411 153070426 2.0E-06 TATGTTTAAAATTTTT 16 V_BCL6_01_M01183 TRANSFAC - 153070418 153070433 2.0E-06 TAAGAAGAAAAATTTT 16 V_BCL6_01_M01183 TRANSFAC - 153070594 153070609 4.0E-06 ATTCCAGGAAATCTTT 16 V_ETS_B_M00340 TRANSFAC - 153070594 153070607 4.0E-06 TCCAGGAAATCTTT 14 V_HOXA13_02_M01297 TRANSFAC - 153067615 153067623 3.0E-06 AAATAAACC 9 V_CBF_02_M01080 TRANSFAC - 153067655 153067670 1.0E-06 TTACCTGTGGTCAACA 16 V_FOXJ2_02_M00423 TRANSFAC + 153067634 153067647 8.0E-06 CCATTAATGTTTTC 14 V_OCTAMER_01_M01324 TRANSFAC + 153067728 153067744 2.0E-06 AACATATACATAAGAGA 17 V_IRF_Q6_01_M00972 TRANSFAC + 153067682 153067692 3.0E-06 GAAAGAGAAAC 11 V_IRF_Q6_01_M00972 TRANSFAC + 153072095 153072105 8.0E-06 GTAAGTGAAAA 11 V_IRF2_Q6_M01882 TRANSFAC + 153067680 153067695 1.0E-06 TGGAAAGAGAAACTGC 16 V_SOX11_04_M02899 TRANSFAC + 153070187 153070200 8.0E-06 CAAATTGTTTTGCT 14 V_STAT5B_01_M00459 TRANSFAC + 153070597 153070611 0.0E+00 GATTTCCTGGAATTA 15 V_STAT5B_01_M00459 TRANSFAC - 153070597 153070611 0.0E+00 TAATTCCAGGAAATC 15 V_FOXJ1_03_M02750 TRANSFAC + 153067328 153067343 2.0E-06 ATAGTAAACACAGAGG 16 V_FOXJ1_03_M02750 TRANSFAC + 153067457 153067472 1.0E-05 TCTGTCAACAAATTGG 16 V_FOXJ1_03_M02750 TRANSFAC + 153070115 153070130 6.0E-06 GAAATAAACACAATTC 16 V_HFH4_01_M00742 TRANSFAC - 153067602 153067614 4.0E-06 ATTTATTTGCTTT 13 V_AREB6_04_M00415 TRANSFAC + 153070559 153070567 8.0E-06 CTGTTTCAA 9 V_NKX24_01_M01350 TRANSFAC - 153067749 153067764 4.0E-06 TTACCTACTTCACAAT 16 V_PU1_Q4_M01172 TRANSFAC - 153070108 153070126 0.0E+00 TGTGTTTATTTCTTCTTTT 19 V_NFAT2_01_M01748 TRANSFAC - 153067449 153067457 2.0E-06 ATGGAAAAT 9 V_NFAT2_01_M01748 TRANSFAC - 153067629 153067637 2.0E-06 ATGGAAAAT 9 V_TCFAP2E_04_M02926 TRANSFAC + 153070098 153070111 6.0E-06 TCCTTGAAAGAAAA 14 V_CDX_Q5_M00991 TRANSFAC + 153070119 153070136 7.0E-06 TAAACACAATTCTATAAA 18 V_LDSPOLYA_B_M00317 TRANSFAC - 153067213 153067228 3.0E-06 TGAGTGAGTTCTCATG 16 V_LDSPOLYA_B_M00317 TRANSFAC - 153067586 153067601 3.0E-06 AAACTGTGTGCCATTC 16 V_CEBPB_01_M00109 TRANSFAC - 153067566 153067579 8.0E-06 GCATGATGAAATCT 14 V_STAT4_Q4_M01666 TRANSFAC - 153070092 153070105 9.0E-06 TTCAAGGAAATGAA 14 V_REX1_01_M01695 TRANSFAC + 153071974 153071983 8.0E-06 TTAGCCATTG 10 V_NRSE_B_M00325 TRANSFAC + 153072028 153072048 1.0E-05 TTCAGCACCTAAGACAGCTCC 21 V_TGIF2_01_M01407 TRANSFAC + 153067452 153067467 7.0E-06 TTCCATCTGTCAACAA 16 V_HELIOSA_02_M01004 TRANSFAC - 153067629 153067639 5.0E-06 TAATGGAAAAT 11 V_TCF3_04_M02816 TRANSFAC - 153067312 153067328 3.0E-06 TATGGATCAAATGAAAA 17 V_FREAC3_01_M00291 TRANSFAC + 153067326 153067341 5.0E-06 ATATAGTAAACACAGA 16 V_GCM1_04_M02862 TRANSFAC + 153067693 153067709 9.0E-06 TGCAGATAAGGGAGGAC 17 V_DBX2_01_M01360 TRANSFAC + 153067632 153067647 4.0E-06 TTCCATTAATGTTTTC 16 V_OCT1_03_M00137 TRANSFAC + 153070578 153070590 8.0E-06 GTAATAATCAGGT 13 V_SOX8_04_M02912 TRANSFAC + 153070210 153070223 3.0E-06 AAATTCATAAGAGA 14 V_NFAT_Q6_M00302 TRANSFAC - 153067628 153067639 1.0E-06 TAATGGAAAATT 12 V_XFD3_01_M00269 TRANSFAC + 153067457 153067470 2.0E-06 TCTGTCAACAAATT 14 V_IRF3_Q3_M01279 TRANSFAC + 153070190 153070202 9.0E-06 ATTGTTTTGCTTT 13 V_NKX25_02_M00241 TRANSFAC - 153070463 153070470 7.0E-06 CTTAATTG 8 V_IRF_Q6_M00772 TRANSFAC - 153067682 153067696 0.0E+00 TGCAGTTTCTCTTTC 15 V_IRF_Q6_M00772 TRANSFAC - 153070216 153070230 9.0E-06 TGCATTTTCTCTTAT 15 V_STAT5A_02_M00460 TRANSFAC - 153070585 153070608 6.0E-06 TTCCAGGAAATCTTTTTTACCTGA 24 V_HNF1_Q6_01_M01011 TRANSFAC - 153070411 153070431 1.0E-06 AGAAGAAAAATTTTAAACATA 21 V_ISRE_01_M00258 TRANSFAC - 153067680 153067694 0.0E+00 CAGTTTCTCTTTCCA 15 V_SFPI1_04_M02896 TRANSFAC - 153067620 153067633 6.0E-06 AAAATTCCAGAAAT 14 V_REST_01_M01256 TRANSFAC - 153072031 153072052 0.0E+00 TTTTGGAGCTGTCTTAGGTGCT 22 V_OCT1_04_M00138 TRANSFAC - 153067623 153067645 4.0E-06 AAACATTAATGGAAAATTCCAGA 23 V_OCT1_04_M00138 TRANSFAC - 153070408 153070430 7.0E-06 GAAGAAAAATTTTAAACATAAAA 23 V_OCT1_08_M01354 TRANSFAC + 153070576 153070591 6.0E-06 TTGTAATAATCAGGTA 16 V_GATA1_09_M02254 TRANSFAC + 153067694 153067704 8.0E-06 GCAGATAAGGG 11 V_GATA1_09_M02254 TRANSFAC - 153070428 153070438 6.0E-06 AATGATAAGAA 11 V_BBX_04_M02843 TRANSFAC - 153067454 153067470 1.0E-05 AATTTGTTGACAGATGG 17 V_TCF7_03_M02817 TRANSFAC - 153067312 153067328 2.0E-06 TATGGATCAAATGAAAA 17 V_STAT4_Q5_M02117 TRANSFAC - 153070096 153070105 5.0E-06 TTCAAGGAAA 10 V_STAT4_Q5_M02117 TRANSFAC - 153070599 153070608 7.0E-06 TTCCAGGAAA 10 V_STAT3_03_M01595 TRANSFAC - 153070595 153070610 9.0E-06 AATTCCAGGAAATCTT 16 V_STAT3_03_M01595 TRANSFAC + 153070598 153070613 7.0E-06 ATTTCCTGGAATTAAG 16 V_CTCF_01_M01200 TRANSFAC + 153070155 153070174 5.0E-06 TGAACCTGCAGATGGTGCTA 20 V_ISGF4G_04_M02875 TRANSFAC - 153067635 153067648 1.0E-06 TGAAAACATTAATG 14 V_ISGF4G_04_M02875 TRANSFAC + 153072100 153072113 9.0E-06 TGAAAACTTTACCT 14 V_ICSBP_Q6_M00699 TRANSFAC + 153067683 153067694 0.0E+00 AAAGAGAAACTG 12 V_FOXO1_Q5_M01216 TRANSFAC - 153067307 153067315 5.0E-06 AAAAACAAC 9 V_FOXO1_Q5_M01216 TRANSFAC + 153072048 153072056 8.0E-06 CAAAACAAA 9 V_KAISO_01_M01119 TRANSFAC - 153070728 153070737 3.0E-06 ATCCTGCTAT 10 V_MTF1_06_M02882 TRANSFAC + 153070109 153070122 1.0E-06 AAAGAAGAAATAAA 14 V_MTF1_06_M02882 TRANSFAC - 153070411 153070424 4.0E-06 AAATTTTAAACATA 14 V_TAL1_01_M01591 TRANSFAC - 153067694 153067706 1.0E-06 CTCCCTTATCTGC 13 V_GATA1_04_M00128 TRANSFAC + 153067693 153067705 9.0E-06 TGCAGATAAGGGA 13 V_BARHL1_01_M01332 TRANSFAC - 153067606 153067621 1.0E-05 ATAAACCATTTATTTG 16 V_CAAT_C_M00200 TRANSFAC - 153070216 153070240 2.0E-06 ACCAAACAACTGCATTTTCTCTTAT 25 V_FOXL1_02_M02857 TRANSFAC - 153070187 153070202 4.0E-06 AAAGCAAAACAATTTG 16 V_FOXL1_02_M02857 TRANSFAC - 153070408 153070423 1.0E-06 AATTTTAAACATAAAA 16 V_FOXL1_04_M02753 TRANSFAC + 153067326 153067342 2.0E-06 ATATAGTAAACACAGAG 17 V_FOXL1_04_M02753 TRANSFAC - 153070408 153070424 7.0E-06 AAATTTTAAACATAAAA 17 V_FOXJ3_06_M02855 TRANSFAC - 153070187 153070203 3.0E-06 GAAAGCAAAACAATTTG 17 V_TCF7_04_M02921 TRANSFAC - 153070572 153070586 7.0E-06 GATTATTACAAACTA 15 V_GATA6_01_M00462 TRANSFAC - 153070429 153070438 1.0E-06 AATGATAAGA 10 V_NRSF_01_M00256 TRANSFAC + 153072028 153072048 0.0E+00 TTCAGCACCTAAGACAGCTCC 21 V_FOXO3_01_M00477 TRANSFAC - 153067328 153067341 7.0E-06 TCTGTGTTTACTAT 14 V_STAT1STAT1_Q3_M01212 TRANSFAC - 153070095 153070107 3.0E-06 CTTTCAAGGAAAT 13 V_REST_02_M02256 TRANSFAC + 153072028 153072048 0.0E+00 TTCAGCACCTAAGACAGCTCC 21 V_STAT6_02_M00500 TRANSFAC + 153070597 153070604 1.0E-05 GATTTCCT 8 V_LMO2COM_02_M00278 TRANSFAC + 153067695 153067703 3.0E-06 CAGATAAGG 9 V_IRF1_Q6_01_M01881 TRANSFAC - 153067666 153067679 8.0E-06 TGATTTCAGTTACC 14 V_IRF1_Q6_01_M01881 TRANSFAC - 153067681 153067694 1.0E-06 CAGTTTCTCTTTCC 14 V_IRF1_Q6_01_M01881 TRANSFAC - 153072094 153072107 8.0E-06 AGTTTTCACTTACC 14 V_DMRT2_01_M01147 TRANSFAC + 153070142 153070157 6.0E-06 TGAATTAAAACTTTGA 16 V_STAT5A_01_M00457 TRANSFAC + 153070597 153070611 0.0E+00 GATTTCCTGGAATTA 15 V_STAT5A_01_M00457 TRANSFAC - 153070597 153070611 0.0E+00 TAATTCCAGGAAATC 15 V_SRF_06_M02916 TRANSFAC - 153070419 153070435 8.0E-06 GATAAGAAGAAAAATTT 17 V_HFH3_01_M00289 TRANSFAC - 153067602 153067614 9.0E-06 ATTTATTTGCTTT 13 V_HFH3_01_M00289 TRANSFAC - 153070115 153070127 7.0E-06 TTGTGTTTATTTC 13 V_HSF2_02_M01244 TRANSFAC - 153067622 153067634 0.0E+00 GAAAATTCCAGAA 13 V_FOXJ2_01_M00422 TRANSFAC + 153067599 153067616 7.0E-06 TTTAAAGCAAATAAATGG 18 V_FOXJ2_01_M00422 TRANSFAC + 153070112 153070129 9.0E-06 GAAGAAATAAACACAATT 18 V_SOX18_04_M02905 TRANSFAC + 153070205 153070220 3.0E-06 AGTTTAAATTCATAAG 16 V_HOXD8_01_M01432 TRANSFAC - 153067631 153067647 3.0E-06 GAAAACATTAATGGAAA 17 V_YY1_01_M00059 TRANSFAC + 153070175 153070191 1.0E-06 TGATTCCATTTTCAAAT 17 V_SOX1_03_M02802 TRANSFAC + 153070207 153070222 8.0E-06 TTTAAATTCATAAGAG 16 V_FOXO1_01_M00473 TRANSFAC + 153070117 153070126 7.0E-06 AATAAACACA 10 V_GATA5_03_M02756 TRANSFAC - 153070425 153070441 2.0E-06 CTGAATGATAAGAAGAA 17 V_FOXO4_01_M00472 TRANSFAC - 153067305 153067315 8.0E-06 AAAAACAACCA 11 V_HNF4_01_M00134 TRANSFAC - 153070145 153070163 7.0E-06 GCAGGTTCAAAGTTTTAAT 19 V_FEV_01_M02269 TRANSFAC - 153070598 153070605 1.0E-05 CAGGAAAT 8 V_STAT1_Q6_M01823 TRANSFAC - 153070599 153070608 2.0E-06 TTCCAGGAAA 10 V_STAT1_05_M01260 TRANSFAC - 153070087 153070108 0.0E+00 TCTTTCAAGGAAATGAATTGTA 22 V_STAT1_05_M01260 TRANSFAC - 153070590 153070611 1.0E-06 TAATTCCAGGAAATCTTTTTTA 22 V_STAT1_05_M01260 TRANSFAC + 153070597 153070618 8.0E-06 GATTTCCTGGAATTAAGCCACA 22 V_FOXK1_03_M02752 TRANSFAC + 153067326 153067342 3.0E-06 ATATAGTAAACACAGAG 17 V_FOXK1_03_M02752 TRANSFAC + 153070113 153070129 9.0E-06 AAGAAATAAACACAATT 17 V_NF1_Q6_M00193 TRANSFAC - 153067230 153067247 8.0E-06 ATTTGGCAAGAATATTTT 18 V_OCT4_01_M01125 TRANSFAC + 153070199 153070213 9.0E-06 CTTTCTAGTTTAAAT 15 V_HSF1_Q6_01_M02017 TRANSFAC - 153067621 153067634 4.0E-06 GAAAATTCCAGAAA 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.