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CLRN1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7401 clarin 1 chr3 - 150690286 - 150695786 150690786 Transcription Factor Binding Sites   Download all TFBS in the CLRN1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 150685877 150685894 1.0E-05 TAAGAAAATAATTCCATA 18 Tp53_p53l_DBD_dimeric_18_1 SELEX + 150688759 150688776 1.0E-06 ACATGTCCTATGGCATGA 18 Tp53_p53l_DBD_dimeric_18_1 SELEX - 150688759 150688776 1.0E-06 TCATGCCATAGGACATGT 18 ZNF713_C2H2_full_monomeric_17_1 SELEX - 150688838 150688854 8.0E-06 TAGACAAAAGCGGAGAA 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 150685877 150685888 5.0E-06 TAAGAAAATAAT 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 150689027 150689041 1.0E-06 CCATTACCTTAATGA 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 150689027 150689041 1.0E-06 TCATTAAGGTAATGG 15 SOX9_HMG_full_dimeric_17_3 SELEX - 150688772 150688788 1.0E-05 GATAAACTTTACTCATG 17 SOX9_HMG_full_dimeric_17_3 SELEX - 150689037 150689053 4.0E-06 AATGGCTTTTATTCATT 17 ZNF435_C2H2_full_dimeric_18_1 SELEX - 150688725 150688742 0.0E+00 GATGTTTTCTGAACACTT 18 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 150685877 150685887 6.0E-06 TAAGAAAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR - 150688975 150688992 2.0E-06 GGAAGGAAGAAAACAAAG 18 SOX7_HMG_full_dimeric_17_2 SELEX - 150688772 150688788 5.0E-06 GATAAACTTTACTCATG 17 SOX7_HMG_full_dimeric_17_2 SELEX - 150689037 150689053 8.0E-06 AATGGCTTTTATTCATT 17 SOX15_HMG_full_dimeric_15_3 SELEX - 150689042 150689056 6.0E-06 CTGAATGGCTTTTAT 15 Pax4_MA0068.1 JASPAR + 150689004 150689033 3.0E-06 AAAACTAAGCAACTCTAACAGCCCCATTAC 30 RUNX3_RUNX_full_monomeric_10_1 SELEX + 150688635 150688644 5.0E-06 CAACCACAAA 10 Sox17_HMG_DBD_dimeric_15_2 SELEX + 150689038 150689052 6.0E-06 ATGAATAAAAGCCAT 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 150689038 150689052 9.0E-06 ATGGCTTTTATTCAT 15 HSF4_HSF_DBD_trimeric_13_1 SELEX + 150688816 150688828 7.0E-06 CTCCAGAAAATTC 13 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 150685888 150685899 5.0E-06 AAACATATGGAA 12 TFEB_bHLH_full_dimeric_10_1 SELEX + 150688959 150688968 3.0E-06 ATCACATGAC 10 ZBTB49_C2H2_DBD_monomeric_17_1 SELEX - 150688614 150688630 5.0E-06 CTATGCTTGTCCTGTCT 17 Foxd3_MA0041.1 JASPAR - 150685878 150685889 7.0E-06 AATTATTTTCTT 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 150689026 150689042 7.0E-06 CCCATTACCTTAATGAA 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 150689026 150689042 3.0E-06 TTCATTAAGGTAATGGG 17 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 150688959 150688968 2.0E-06 ATCACATGAC 10 FOXI1_forkhead_full_dimeric_17_1 SELEX + 150688725 150688741 2.0E-06 AAGTGTTCAGAAAACAT 17 SOX18_HMG_full_dimeric_15_3 SELEX - 150689038 150689052 2.0E-06 ATGGCTTTTATTCAT 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 150689037 150689053 7.0E-06 AATGGCTTTTATTCATT 17 RUNX1_MA0002.2 JASPAR - 150688635 150688645 9.0E-06 TTTTGTGGTTG 11 IRF3_IRF_full_trimeric_21_1 SELEX - 150688925 150688945 1.0E-06 AAAAAACCGAAAAGGAAAAAA 21 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 150685889 150685898 9.0E-06 TCCATATGTT 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 150685889 150685898 7.0E-06 AACATATGGA 10 HNF1A_MA0046.1 JASPAR + 150685853 150685866 7.0E-06 GGTTAAATTTTATT 14 TEAD1_MA0090.1 JASPAR - 150688662 150688673 5.0E-06 CACATTCTTCTG 12 V_HNF3B_01_M00131 TRANSFAC - 150685877 150685891 0.0E+00 GGAATTATTTTCTTA 15 V_TCF3_01_M01594 TRANSFAC + 150688974 150688986 2.0E-06 GCTTTGTTTTCTT 13 V_HSF1_Q6_M01023 TRANSFAC + 150688815 150688831 4.0E-06 GCTCCAGAAAATTCACC 17 V_OSF2_Q6_M00731 TRANSFAC + 150688637 150688644 1.0E-05 ACCACAAA 8 V_BACH2_01_M00490 TRANSFAC - 150688894 150688904 2.0E-06 CGTGAGTCACC 11 V_ATF5_01_M01295 TRANSFAC + 150688981 150688991 7.0E-06 TTTCTTCCTTC 11 V_CHOP_01_M00249 TRANSFAC - 150693536 150693548 5.0E-06 CAATGCAATCACC 13 V_BCL6B_03_M02740 TRANSFAC + 150685940 150685955 2.0E-06 TATATCTAGGAATGAT 16 V_NFY_Q6_M00185 TRANSFAC - 150685847 150685857 0.0E+00 TAACCAATCAT 11 V_FOXD3_01_M00130 TRANSFAC - 150685878 150685889 5.0E-06 AATTATTTTCTT 12 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC + 150688822 150688833 1.0E-06 AAAATTCACCAG 12 V_AML3_Q6_M01856 TRANSFAC + 150688636 150688643 1.0E-05 AACCACAA 8 V_HOXA13_02_M01297 TRANSFAC - 150685859 150685867 4.0E-06 AAATAAAAT 9 V_SPDEF_04_M02915 TRANSFAC + 150688734 150688749 7.0E-06 GAAAACATCTTATTAT 16 V_NFAT3_Q3_M01734 TRANSFAC - 150689001 150689010 1.0E-05 TAGTTTTCCT 10 V_HOXA4_01_M01370 TRANSFAC - 150689031 150689047 5.0E-06 TTTTATTCATTAAGGTA 17 V_AFP1_Q6_M00616 TRANSFAC - 150688740 150688750 9.0E-06 AATAATAAGAT 11 V_NFY_Q6_01_M00775 TRANSFAC - 150685848 150685860 0.0E+00 ATTTAACCAATCA 13 V_CDX_Q5_M00991 TRANSFAC + 150685926 150685943 7.0E-06 AATGAATAGATCAGTATA 18 V_HBP1_Q2_M01661 TRANSFAC - 150685907 150685915 8.0E-06 TTCAATGAG 9 V_AR_03_M00956 TRANSFAC - 150688591 150688617 6.0E-06 GTCTAAGGATGAAGTTGTTCTAATTGG 27 V_HNF1_C_M00206 TRANSFAC + 150685922 150685938 7.0E-06 TGGCAATGAATAGATCA 17 V_NFY_C_M00209 TRANSFAC + 150685846 150685859 5.0E-06 CATGATTGGTTAAA 14 V_ELF4_04_M02850 TRANSFAC - 150685856 150685872 4.0E-06 GTGAAAAATAAAATTTA 17 V_ELF4_04_M02850 TRANSFAC - 150685857 150685873 2.0E-06 TGTGAAAAATAAAATTT 17 V_ELF4_04_M02850 TRANSFAC + 150685874 150685890 3.0E-06 TTTTAAGAAAATAATTC 17 V_SOX7_03_M02807 TRANSFAC - 150688739 150688760 9.0E-06 GTTTCAAAACAATAATAAGATG 22 V_HELIOSA_02_M01004 TRANSFAC - 150688926 150688936 0.0E+00 AAAAGGAAAAA 11 V_DBX2_01_M01360 TRANSFAC + 150689030 150689045 5.0E-06 TTACCTTAATGAATAA 16 V_PR_01_M00954 TRANSFAC - 150688591 150688617 1.0E-06 GTCTAAGGATGAAGTTGTTCTAATTGG 27 V_ZFP105_03_M02827 TRANSFAC - 150685856 150685870 1.0E-05 GAAAAATAAAATTTA 15 V_FOXO1_02_M00474 TRANSFAC + 150688974 150688987 8.0E-06 GCTTTGTTTTCTTC 14 V_RUNX1_01_M02257 TRANSFAC - 150688635 150688645 9.0E-06 TTTTGTGGTTG 11 V_MYCMAX_02_M00123 TRANSFAC + 150688958 150688969 6.0E-06 TATCACATGACA 12 V_NFAT_Q6_M00302 TRANSFAC - 150688925 150688936 3.0E-06 AAAAGGAAAAAA 12 V_NKX31_02_M02782 TRANSFAC - 150686242 150686258 6.0E-06 CTCATCCACTTATGGGT 17 V_POLY_C_M00212 TRANSFAC - 150688862 150688879 3.0E-06 GAGTAAAGCTTCTCACAG 18 V_NKX61_01_M00424 TRANSFAC + 150686363 150686375 7.0E-06 CATTTAATAGGAA 13 V_AML2_01_M01759 TRANSFAC + 150688636 150688643 1.0E-05 AACCACAA 8 V_RSRFC4_Q2_M00407 TRANSFAC - 150685858 150685874 6.0E-06 ATGTGAAAAATAAAATT 17 V_RXRA_04_M02895 TRANSFAC - 150689145 150689160 0.0E+00 TCACATAGGTTACTAA 16 V_HNF1_Q6_01_M01011 TRANSFAC - 150685850 150685870 1.0E-06 GAAAAATAAAATTTAACCAAT 21 V_HNF1_Q6_01_M01011 TRANSFAC - 150685856 150685876 2.0E-06 AAATGTGAAAAATAAAATTTA 21 V_SREBP_Q6_M01168 TRANSFAC + 150693524 150693538 0.0E+00 CGAATCACCCCAGGT 15 V_USF_02_M00122 TRANSFAC + 150688957 150688970 1.0E-06 ATATCACATGACAT 14 V_USF_02_M00122 TRANSFAC - 150688957 150688970 1.0E-06 ATGTCATGTGATAT 14 V_HOX13_01_M00023 TRANSFAC + 150689016 150689045 6.0E-06 CTCTAACAGCCCCATTACCTTAATGAATAA 30 V_OCT1_04_M00138 TRANSFAC + 150686325 150686347 8.0E-06 TTGTTATAATTAAAAGAGATAGA 23 V_OCT1_08_M01354 TRANSFAC - 150689032 150689047 7.0E-06 TTTTATTCATTAAGGT 16 V_GR_01_M00955 TRANSFAC - 150688591 150688617 4.0E-06 GTCTAAGGATGAAGTTGTTCTAATTGG 27 V_TEF_01_M01305 TRANSFAC - 150688662 150688673 5.0E-06 CACATTCTTCTG 12 V_ARID3A_04_M02735 TRANSFAC - 150686325 150686341 2.0E-06 TCTTTTAATTATAACAA 17 V_ARID3A_04_M02735 TRANSFAC + 150686326 150686342 2.0E-06 TGTTATAATTAAAAGAG 17 V_SOX11_03_M02795 TRANSFAC - 150688970 150688986 3.0E-06 AAGAAAACAAAGCAGAA 17 V_AP1_Q2_01_M00924 TRANSFAC + 150688896 150688907 2.0E-06 TGACTCACGGTT 12 V_FOXO1_Q5_M01216 TRANSFAC - 150688976 150688984 5.0E-06 GAAAACAAA 9 V_CAAT_01_M00254 TRANSFAC - 150685848 150685859 0.0E+00 TTTAACCAATCA 12 V_SOX15_03_M02799 TRANSFAC - 150685858 150685874 7.0E-06 ATGTGAAAAATAAAATT 17 V_MTF1_06_M02882 TRANSFAC - 150685863 150685876 3.0E-06 AAATGTGAAAAATA 14 V_AP3_Q6_M00690 TRANSFAC + 150688851 150688858 5.0E-06 TCTAAATT 8 V_NFYC_Q5_M02107 TRANSFAC - 150690870 150690883 4.0E-06 CACCCAATCAGACA 14 V_HOXB8_01_M01451 TRANSFAC + 150686326 150686341 4.0E-06 TGTTATAATTAAAAGA 16 V_HNF1_01_M00132 TRANSFAC + 150685853 150685867 6.0E-06 GGTTAAATTTTATTT 15 V_TFEB_01_M01768 TRANSFAC + 150688959 150688968 7.0E-06 ATCACATGAC 10 V_TFEB_01_M01768 TRANSFAC - 150688959 150688968 7.0E-06 GTCATGTGAT 10 V_TCF7_04_M02921 TRANSFAC - 150688938 150688952 1.0E-06 CTGTATTAAAAAACC 15 V_PLZF_02_M01075 TRANSFAC + 150693493 150693521 6.0E-06 TTTATTTGATTTTAGAGTATGGCCTTAGC 29 V_SREBP_Q3_M00776 TRANSFAC + 150693524 150693535 5.0E-06 CGAATCACCCCA 12 V_BBX_03_M02739 TRANSFAC - 150685904 150685918 5.0E-06 TAGTTCAATGAGCTG 15 V_OCT1_06_M00162 TRANSFAC - 150688961 150688974 6.0E-06 CAGAATGTCATGTG 14 V_SRF_06_M02916 TRANSFAC - 150685856 150685872 4.0E-06 GTGAAAAATAAAATTTA 17 V_SRF_06_M02916 TRANSFAC - 150685857 150685873 3.0E-06 TGTGAAAAATAAAATTT 17 V_SRF_06_M02916 TRANSFAC + 150685874 150685890 6.0E-06 TTTTAAGAAAATAATTC 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 150688975 150688992 2.0E-06 GGAAGGAAGAAAACAAAG 18 V_SOX1_03_M02802 TRANSFAC - 150689033 150689048 2.0E-06 CTTTTATTCATTAAGG 16 V_PR_02_M00957 TRANSFAC - 150688591 150688617 2.0E-06 GTCTAAGGATGAAGTTGTTCTAATTGG 27 V_PPARG_02_M00515 TRANSFAC - 150686248 150686270 6.0E-06 CTCTGGCTGATTCTCATCCACTT 23 V_HOXA7_03_M01394 TRANSFAC - 150689030 150689045 9.0E-06 TTATTCATTAAGGTAA 16 V_TFE_Q6_M01029 TRANSFAC - 150688960 150688967 1.0E-05 TCATGTGA 8 V_HOXA10_01_M01464 TRANSFAC - 150685856 150685871 5.0E-06 TGAAAAATAAAATTTA 16 V_HNF1A_01_M02162 TRANSFAC + 150685853 150685866 7.0E-06 GGTTAAATTTTATT 14 V_SREBP1_Q5_M01173 TRANSFAC + 150693524 150693538 0.0E+00 CGAATCACCCCAGGT 15 V_TCF3_05_M02920 TRANSFAC - 150685859 150685873 2.0E-06 TGTGAAAAATAAAAT 15 V_GLIS2_04_M02863 TRANSFAC - 150688938 150688951 5.0E-06 TGTATTAAAAAACC 14 V_PAX4_04_M00380 TRANSFAC - 150685837 150685866 4.0E-06 AATAAAATTTAACCAATCATGTATCACAGC 30 V_NANOG_02_M01247 TRANSFAC - 150685860 150685879 8.0E-06 TTAAAATGTGAAAAATAAAA 20 V_NANOG_02_M01247 TRANSFAC - 150688969 150688988 4.0E-06 GGAAGAAAACAAAGCAGAAT 20 V_HSF1_Q6_01_M02017 TRANSFAC - 150688815 150688828 1.0E-06 GAATTTTCTGGAGC 14

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.