Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

UBA7 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7318 ubiquitin-like modifier activating enzyme 7 chr3 - 49850891 - 49856391 49851391 Transcription Factor Binding Sites   Download all TFBS in the UBA7 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX1_TBX_DBD_dimeric_20_2 SELEX + 49851519 49851538 3.0E-06 GTCAGACCTGAGGGTGGGAG 20 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 49851586 49851603 8.0E-06 TTTATTTTGAAATAATTA 18 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 49851596 49851605 2.0E-06 AATAATTATA 10 DLX1_homeodomain_DBD_monomeric_10_1 SELEX - 49851596 49851605 8.0E-06 TATAATTATT 10 IRF7_IRF_DBD_dimeric_14_1 SELEX + 49851385 49851398 4.0E-06 AGAAAAGTGAAAGT 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 49851161 49851172 7.0E-06 TCACAGCTGTCT 12 FOXA1_MA0148.1 JASPAR - 49851316 49851326 3.0E-06 TGTTTGCACTG 11 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 49851587 49851604 6.0E-06 TTATTTTGAAATAATTAT 18 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 49851596 49851605 3.0E-06 AATAATTATA 10 IRF1_MA0050.1 JASPAR + 49851387 49851398 1.0E-06 AAAAGTGAAAGT 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 49851161 49851172 8.0E-06 TCACAGCTGTCT 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 49851161 49851172 7.0E-06 AGACAGCTGTGA 12 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 49851597 49851614 9.0E-06 ATAATTATAGACTCATAA 18 MYBL1_MYB_DBD_dimeric_12_1 SELEX + 49851394 49851405 8.0E-06 AAAGTTAAACTA 12 IRF9_IRF_full_trimeric_15_1 SELEX + 49851384 49851398 6.0E-06 AAGAAAAGTGAAAGT 15 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 49851386 49851400 0.0E+00 GAAAAGTGAAAGTTA 15 Tp53_p53l_DBD_dimeric_17_1 SELEX + 49855483 49855499 2.0E-06 ACATGCCAGCTGCATGT 17 Tp53_p53l_DBD_dimeric_17_1 SELEX - 49855483 49855499 3.0E-06 ACATGCAGCTGGCATGT 17 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 49851161 49851172 7.0E-06 AGACAGCTGTGA 12 IRF3_IRF_full_trimeric_21_1 SELEX + 49851379 49851399 1.0E-06 GAGAAAAGAAAAGTGAAAGTT 21 IRF3_IRF_full_trimeric_21_1 SELEX + 49851385 49851405 5.0E-06 AGAAAAGTGAAAGTTAAACTA 21 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 49851586 49851603 7.0E-06 TTTATTTTGAAATAATTA 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX - 49851587 49851604 9.0E-06 ATAATTATTTCAAAATAA 18 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 49851597 49851614 6.0E-06 ATAATTATAGACTCATAA 18 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 49851596 49851605 5.0E-06 AATAATTATA 10 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 49851597 49851604 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 49851597 49851604 4.0E-06 ATAATTAT 8 IRF2_MA0051.1 JASPAR + 49851386 49851403 0.0E+00 GAAAAGTGAAAGTTAAAC 18 V_CDP_03_M01342 TRANSFAC - 49851498 49851514 9.0E-06 AGAGACTGATCACCTCT 17 V_CEBPG_Q6_M00622 TRANSFAC - 49851589 49851601 0.0E+00 ATTATTTCAAAAT 13 V_HNF3B_01_M00131 TRANSFAC - 49851623 49851637 1.0E-06 TGCACTATTTTTTTT 15 V_DBX1_01_M01483 TRANSFAC - 49851587 49851603 2.0E-06 TAATTATTTCAAAATAA 17 V_CEBP_Q3_M00770 TRANSFAC + 49851587 49851598 7.0E-06 TTATTTTGAAAT 12 V_DLX3_01_M01400 TRANSFAC + 49851592 49851608 0.0E+00 TTGAAATAATTATAGAC 17 V_BCL6_01_M01183 TRANSFAC + 49851572 49851587 9.0E-06 TTTCCTTTTAGACTTT 16 V_HOXA13_02_M01297 TRANSFAC - 49851584 49851592 9.0E-06 AAATAAAAG 9 V_MAFB_03_M02879 TRANSFAC - 49851586 49851600 8.0E-06 TTATTTCAAAATAAA 15 V_MAFB_03_M02879 TRANSFAC + 49851616 49851630 0.0E+00 AAGTTGCAAAAAAAA 15 V_TBR2_01_M01774 TRANSFAC - 49851555 49851563 8.0E-06 ATGTGTGAA 9 V_IRF_Q6_01_M00972 TRANSFAC + 49851387 49851397 0.0E+00 AAAAGTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 49851385 49851400 0.0E+00 AGAAAAGTGAAAGTTA 16 V_NFAT3_Q3_M01734 TRANSFAC + 49851568 49851577 3.0E-06 TTATTTTCCT 10 V_SOX11_04_M02899 TRANSFAC - 49851591 49851604 5.0E-06 ATAATTATTTCAAA 14 V_CEBP_Q2_M00190 TRANSFAC + 49851616 49851629 5.0E-06 AAGTTGCAAAAAAA 14 V_CUX1_03_M02958 TRANSFAC - 49851498 49851514 9.0E-06 AGAGACTGATCACCTCT 17 V_DLX2_01_M01468 TRANSFAC - 49851592 49851607 4.0E-06 TCTATAATTATTTCAA 16 V_PU1_Q4_M01172 TRANSFAC + 49855448 49855466 7.0E-06 CCCATTGGCTTCTTCTCTT 19 V_PAX6_02_M01391 TRANSFAC - 49851592 49851607 9.0E-06 TCTATAATTATTTCAA 16 V_CEBPB_01_M00109 TRANSFAC + 49851587 49851600 6.0E-06 TTATTTTGAAATAA 14 V_NKX62_Q2_M00489 TRANSFAC + 49851594 49851605 1.0E-06 GAAATAATTATA 12 V_PAX_Q6_M00808 TRANSFAC - 49851479 49851489 5.0E-06 CTGGAACTCAT 11 V_ELF4_04_M02850 TRANSFAC - 49851581 49851597 2.0E-06 TTTCAAAATAAAAGTCT 17 V_ELF4_04_M02850 TRANSFAC - 49851582 49851598 4.0E-06 ATTTCAAAATAAAAGTC 17 V_ELF4_04_M02850 TRANSFAC + 49851618 49851634 2.0E-06 GTTGCAAAAAAAATAGT 17 V_HELIOSA_02_M01004 TRANSFAC - 49851570 49851580 1.0E-06 AAAAGGAAAAT 11 V_GCM1_04_M02862 TRANSFAC + 49851340 49851356 4.0E-06 AGCGAATAAGGGACGCT 17 V_DBX2_01_M01360 TRANSFAC - 49851594 49851609 6.0E-06 AGTCTATAATTATTTC 16 V_NFAT_Q6_M00302 TRANSFAC - 49851569 49851580 3.0E-06 AAAAGGAAAATA 12 V_IRF2_01_M00063 TRANSFAC + 49851386 49851398 0.0E+00 GAAAAGTGAAAGT 13 V_IRF_Q6_M00772 TRANSFAC - 49851387 49851401 0.0E+00 TTAACTTTCACTTTT 15 V_HNF1_Q6_01_M01011 TRANSFAC + 49851387 49851407 1.0E-05 AAAAGTGAAAGTTAAACTATG 21 V_TTF1_Q6_M00794 TRANSFAC + 49851492 49851503 3.0E-06 CTCTCAAGAGGT 12 V_NKX22_02_M01372 TRANSFAC - 49851490 49851506 5.0E-06 ATCACCTCTTGAGAGTC 17 V_SOX18_03_M02801 TRANSFAC - 49851590 49851605 1.0E-06 TATAATTATTTCAAAA 16 V_ISRE_01_M00258 TRANSFAC - 49851391 49851405 7.0E-06 TAGTTTAACTTTCAC 15 V_PAX6_Q2_M00979 TRANSFAC - 49851481 49851494 7.0E-06 GAGTCCTGGAACTC 14 V_OCT1_04_M00138 TRANSFAC - 49851583 49851605 7.0E-06 TATAATTATTTCAAAATAAAAGT 23 V_OCT1_08_M01354 TRANSFAC + 49851592 49851607 5.0E-06 TTGAAATAATTATAGA 16 V_PIT1_01_M01465 TRANSFAC + 49851591 49851607 9.0E-06 TTTGAAATAATTATAGA 17 V_TAL1BETAE47_01_M00065 TRANSFAC - 49846456 49846471 4.0E-06 CCCAACAGATGGCCCC 16 V_NKX3A_01_M00451 TRANSFAC - 49851595 49851606 7.0E-06 CTATAATTATTT 12 V_NCX_02_M01420 TRANSFAC - 49851587 49851603 8.0E-06 TAATTATTTCAAAATAA 17 V_ISGF3G_03_M02771 TRANSFAC + 49851386 49851400 9.0E-06 GAAAAGTGAAAGTTA 15 V_SMAD4_Q6_M00733 TRANSFAC + 49851541 49851555 6.0E-06 ATGGGGCAGCCACAT 15 V_IRF7_01_M00453 TRANSFAC + 49851384 49851401 1.0E-06 AAGAAAAGTGAAAGTTAA 18 V_TAL1BETAITF2_01_M00070 TRANSFAC - 49846456 49846471 2.0E-06 CCCAACAGATGGCCCC 16 V_DLX7_01_M01486 TRANSFAC + 49851592 49851608 1.0E-06 TTGAAATAATTATAGAC 17 V_MYOD_Q6_02_M02100 TRANSFAC + 49851164 49851172 8.0E-06 CAGCTGTCT 9 V_TAL1_01_M01591 TRANSFAC - 49851378 49851390 3.0E-06 TTTTCTTTTCTCC 13 V_BRN4_01_M01473 TRANSFAC + 49851591 49851607 7.0E-06 TTTGAAATAATTATAGA 17 V_CEBPA_01_M00116 TRANSFAC + 49851616 49851629 6.0E-06 AAGTTGCAAAAAAA 14 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 49851528 49851536 8.0E-06 GAGGGTGGG 9 V_FOXL1_02_M02857 TRANSFAC - 49851583 49851598 0.0E+00 ATTTCAAAATAAAAGT 16 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 49846456 49846471 1.0E-05 CCCAACAGATGGCCCC 16 V_NKX61_02_M01469 TRANSFAC - 49851594 49851609 3.0E-06 AGTCTATAATTATTTC 16 V_GATA3_01_M00077 TRANSFAC + 49851259 49851267 4.0E-06 GAGATAGGG 9 V_IRF1_Q6_01_M01881 TRANSFAC - 49851386 49851399 0.0E+00 AACTTTCACTTTTC 14 V_SRF_02_M01257 TRANSFAC - 49851655 49851672 5.0E-06 TTCCTAAGAAGGCAAAAG 18 V_SRF_06_M02916 TRANSFAC - 49851582 49851598 8.0E-06 ATTTCAAAATAAAAGTC 17 V_SRF_06_M02916 TRANSFAC + 49851618 49851634 8.0E-06 GTTGCAAAAAAAATAGT 17 V_HOXD8_01_M01432 TRANSFAC + 49851594 49851610 2.0E-06 GAAATAATTATAGACTC 17 V_IRF1_01_M00062 TRANSFAC + 49851386 49851398 0.0E+00 GAAAAGTGAAAGT 13 V_MOX1_01_M01443 TRANSFAC - 49851592 49851607 9.0E-06 TCTATAATTATTTCAA 16 V_HOXD3_01_M01338 TRANSFAC + 49851592 49851607 7.0E-06 TTGAAATAATTATAGA 16 V_DLX1_01_M01439 TRANSFAC + 49851592 49851605 1.0E-06 TTGAAATAATTATA 14 V_GBX1_01_M01371 TRANSFAC - 49851593 49851609 9.0E-06 AGTCTATAATTATTTCA 17 V_PAX4_04_M00380 TRANSFAC + 49855400 49855429 1.0E-05 AAAAAAAAAAAAAAAAGTGTGTGTCTCCCC 30 V_CEBPA_Q6_M01866 TRANSFAC + 49851587 49851599 6.0E-06 TTATTTTGAAATA 13 V_HOXC8_01_M01321 TRANSFAC + 49851592 49851607 5.0E-06 TTGAAATAATTATAGA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.