Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 728392 uncharacterized LOC728392 chr17 - 5403819 - 5409319 5404319 Transcription Factor Binding Sites   Download all TFBS in the promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NHLH1_MA0048.1 JASPAR + 5404653 5404664 3.0E-06 TCTCAGCTGCGT 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 5404537 5404552 0.0E+00 TGTCTCCATGGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 5404537 5404552 1.0E-06 GGTTGCCATGGAGACA 16 EBF1_EBF_full_dimeric_14_1 SELEX + 5402946 5402959 1.0E-06 AATCCCTAGGGATC 14 EBF1_EBF_full_dimeric_14_1 SELEX - 5402946 5402959 3.0E-06 GATCCCTAGGGATT 14 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 5402964 5402975 2.0E-06 GGTTTTCCCGCA 12 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 5404537 5404552 1.0E-06 TGTCTCCATGGCAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 5404537 5404552 0.0E+00 GGTTGCCATGGAGACA 16 SP4_C2H2_full_monomeric_17_1 SELEX - 5404329 5404345 2.0E-06 GTAGCCCCGCCCACCGC 17 SP4_C2H2_full_monomeric_17_1 SELEX - 5404367 5404383 8.0E-06 CTGGCTCCGCCCCCACC 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 5404332 5404342 1.0E-05 GCCCCGCCCAC 11 RFX2_RFX_DBD_dimeric_16_1 SELEX + 5404537 5404552 1.0E-06 TGTCTCCATGGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 5404537 5404552 0.0E+00 GGTTGCCATGGAGACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 5404537 5404552 1.0E-06 TGTCTCCATGGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 5404537 5404552 1.0E-06 GGTTGCCATGGAGACA 16 V_COE1_Q6_M01871 TRANSFAC - 5402944 5402957 1.0E-06 TCCCTAGGGATTTG 14 V_RORA_Q4_M01138 TRANSFAC + 5404292 5404302 6.0E-06 TAGGTGGGTCA 11 V_EGR_Q6_M00807 TRANSFAC + 5404368 5404378 7.0E-06 GTGGGGGCGGA 11 V_RFX4_03_M02789 TRANSFAC + 5404540 5404554 5.0E-06 CTCCATGGCAACCAG 15 V_GKLF_02_M01588 TRANSFAC - 5404331 5404342 8.0E-06 GCCCCGCCCACC 12 V_HEN1_01_M00068 TRANSFAC + 5403412 5403433 9.0E-06 CTGGGGCACAGCTGGCTCCTCC 22 V_GC_01_M00255 TRANSFAC + 5404369 5404382 9.0E-06 TGGGGGCGGAGCCA 14 V_KROX_Q6_M00982 TRANSFAC - 5404365 5404378 5.0E-06 TCCGCCCCCACCCG 14 V_SP1_Q6_M00196 TRANSFAC + 5404331 5404343 4.0E-06 GGTGGGCGGGGCT 13 V_SP1_Q6_M00196 TRANSFAC + 5404369 5404381 6.0E-06 TGGGGGCGGAGCC 13 V_PAX6_Q2_M00979 TRANSFAC - 5404487 5404500 9.0E-06 CGGAGCTGGAACCC 14 V_STAT4_Q5_M02117 TRANSFAC + 5404695 5404704 2.0E-06 TTAAAAGAAA 10 V_HIC1_02_M01072 TRANSFAC - 5404161 5404175 9.0E-06 TCCCGCTGCCCGCGG 15 V_SP4_Q5_M01273 TRANSFAC - 5404332 5404342 9.0E-06 GCCCCGCCCAC 11 V_ZIC2_05_M02940 TRANSFAC - 5403370 5403384 7.0E-06 GCGCGCAGCAGGCGA 15 V_HEN1_02_M00058 TRANSFAC - 5403412 5403433 5.0E-06 GGAGGAGCCAGCTGTGCCCCAG 22 V_NCX_01_M00484 TRANSFAC - 5403343 5403352 4.0E-06 CGGTAAGTGG 10 V_SRF_06_M02916 TRANSFAC + 5404693 5404709 5.0E-06 TTTTAAAAGAAATATTT 17 V_RFX3_04_M02788 TRANSFAC + 5404536 5404558 5.0E-06 TTGTCTCCATGGCAACCAGACTG 23 V_SP1_Q4_01_M00932 TRANSFAC + 5404331 5404343 3.0E-06 GGTGGGCGGGGCT 13 V_RNF96_01_M01199 TRANSFAC + 5404136 5404145 7.0E-06 GCCCGCGGCC 10 V_RFX1_02_M00281 TRANSFAC + 5404536 5404553 1.0E-06 TTGTCTCCATGGCAACCA 18 V_ZIC1_05_M02939 TRANSFAC - 5403370 5403384 9.0E-06 GCGCGCAGCAGGCGA 15 V_AP2_Q3_M00800 TRANSFAC + 5404159 5404174 9.0E-06 GCCCGCGGGCAGCGGG 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.