Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KRTAP4-8 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 728224 keratin associated protein 4-8 chr17 - 39253875 - 39259375 39254375 Transcription Factor Binding Sites   Download all TFBS in the KRTAP4-8 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 39254979 39254989 5.0E-06 CATGACTCACT 11 IRF7_IRF_DBD_dimeric_14_1 SELEX - 39256590 39256603 7.0E-06 ACGAAACTGGAAAT 14 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 39254994 39255006 7.0E-06 TTAAAGGGTAAAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 39256619 39256631 5.0E-06 GATCAACAAACAT 13 SRY_HMG_DBD_dimeric_16_1 SELEX - 39256615 39256630 7.0E-06 ATCAACAAACATTTTT 16 POU3F4_POU_DBD_monomeric_9_1 SELEX + 39256127 39256135 7.0E-06 AATGCAAAT 9 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 39256202 39256215 1.0E-06 AACAAACATTTACC 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 39256580 39256593 1.0E-05 AAATAATAGTTATT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 39256614 39256627 4.0E-06 CAAAAATGTTTGTT 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 39256614 39256627 7.0E-06 AACAAACATTTTTG 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 39254857 39254870 4.0E-06 GTCATCCTCATTAC 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 39256202 39256215 9.0E-06 GGTAAATGTTTGTT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 39256202 39256215 3.0E-06 AACAAACATTTACC 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 39256580 39256593 6.0E-06 AAATAATAGTTATT 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 39256614 39256627 1.0E-05 CAAAAATGTTTGTT 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 39256620 39256630 2.0E-06 ATCAACAAACA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 39252537 39252550 6.0E-06 GTACATAATCAAAA 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 39256620 39256630 3.0E-06 ATCAACAAACA 11 FEV_MA0156.1 JASPAR - 39256051 39256058 1.0E-05 CAGGAAAT 8 JDP2_bZIP_full_dimeric_9_1 SELEX + 39254980 39254988 7.0E-06 ATGACTCAC 9 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 39256075 39256090 9.0E-06 ACAGGAGAATGTAACA 16 PPARG_MA0066.1 JASPAR + 39256531 39256550 8.0E-06 CTGGTTCTCCTTCACCTCCT 20 ETV6_ETS_full_dimeric_15_1 SELEX - 39256589 39256603 8.0E-06 ACGAAACTGGAAATA 15 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 39256265 39256275 5.0E-06 AATGTATATAT 11 POU4F1_POU_DBD_monomeric_14_1 SELEX - 39256258 39256271 4.0E-06 ATACATTTTTAAAG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 39252537 39252550 3.0E-06 GTACATAATCAAAA 14 V_DMRT4_01_M01149 TRANSFAC - 39256071 39256083 0.0E+00 AATGTAACAAATT 13 V_MEQ_01_M02049 TRANSFAC + 39255004 39255012 4.0E-06 AAAACACAT 9 V_CDP_03_M01342 TRANSFAC - 39256622 39256638 5.0E-06 AACAGATGATCAACAAA 17 V_FOXP3_Q4_M00992 TRANSFAC - 39256608 39256624 6.0E-06 AAACATTTTTGGCTGAC 17 V_TCFE2A_04_M02927 TRANSFAC + 39254899 39254915 6.0E-06 TCGGGCAGATGGTCAGA 17 V_TCFE2A_04_M02927 TRANSFAC + 39256514 39256530 4.0E-06 AACGCCAGATGGTAGCA 17 V_DMRT3_01_M01148 TRANSFAC + 39256071 39256085 0.0E+00 AATTTGTTACATTCT 15 V_SATB1_Q3_M01723 TRANSFAC - 39256252 39256267 1.0E-06 ATTTTTAAAGGACCTT 16 V_FOXJ2_02_M00423 TRANSFAC - 39256581 39256594 2.0E-06 GAAATAATAGTTAT 14 V_OCT1_Q5_01_M00930 TRANSFAC - 39256127 39256137 6.0E-06 GTATTTGCATT 11 V_ZTA_Q2_M00711 TRANSFAC + 39254975 39254987 5.0E-06 TACCCATGACTCA 13 V_OCT1_01_M00135 TRANSFAC - 39252505 39252523 8.0E-06 TCAAGTATGCAAAGGCAGA 19 V_POU1F1_Q6_M00744 TRANSFAC + 39256266 39256275 5.0E-06 ATGTATATAT 10 V_CUX1_03_M02958 TRANSFAC - 39256622 39256638 5.0E-06 AACAGATGATCAACAAA 17 V_FOXJ1_03_M02750 TRANSFAC - 39256618 39256633 2.0E-06 ATGATCAACAAACATT 16 V_STAT6_01_M00494 TRANSFAC + 39256589 39256596 7.0E-06 TATTTCCA 8 V_OCT_C_M00210 TRANSFAC + 39252507 39252519 7.0E-06 TGCCTTTGCATAC 13 V_GM497_04_M02864 TRANSFAC - 39254876 39254891 4.0E-06 AGATGCACACACGGGA 16 V_TCFAP2E_04_M02926 TRANSFAC - 39256586 39256599 4.0E-06 AACTGGAAATAATA 14 V_CETS1P54_02_M00074 TRANSFAC - 39256588 39256600 9.0E-06 AAACTGGAAATAA 13 V_TAL1_Q6_M00993 TRANSFAC - 39258197 39258206 3.0E-06 TCCAGCTGCT 10 V_TAL1_Q6_M00993 TRANSFAC - 39258317 39258326 3.0E-06 TCCAGCTGCT 10 V_BACH1_01_M00495 TRANSFAC - 39254977 39254991 5.0E-06 GCAGTGAGTCATGGG 15 V_ZFP105_03_M02827 TRANSFAC - 39252533 39252547 2.0E-06 CATAATCAAAAAGTA 15 V_HNF3G_Q4_M02015 TRANSFAC + 39256208 39256215 7.0E-06 TGTTTGTT 8 V_HNF3G_Q4_M02015 TRANSFAC + 39256620 39256627 7.0E-06 TGTTTGTT 8 V_SOX1_04_M02906 TRANSFAC - 39256579 39256593 4.0E-06 AAATAATAGTTATTT 15 V_RFX1_01_M00280 TRANSFAC - 39256167 39256183 7.0E-06 GAGTATCATGGTAACAA 17 V_HNF3_Q6_M00791 TRANSFAC - 39256206 39256218 4.0E-06 CTCAACAAACATT 13 V_HNF3_Q6_M00791 TRANSFAC - 39256618 39256630 2.0E-06 ATCAACAAACATT 13 V_TATA_C_M00216 TRANSFAC + 39256257 39256266 6.0E-06 CCTTTAAAAA 10 V_ASCL2_03_M02737 TRANSFAC + 39258116 39258132 3.0E-06 GGCAGCAGCTGCTGGAG 17 V_ASCL2_03_M02737 TRANSFAC - 39258328 39258344 4.0E-06 TCCCACAGCTGCTCTGT 17 V_OCT1_04_M00138 TRANSFAC + 39256258 39256280 4.0E-06 CTTTAAAAATGTATATATCTTTT 23 V_IRF4_03_M02768 TRANSFAC - 39256593 39256607 1.0E-05 TGATACGAAACTGGA 15 V_HB24_01_M01399 TRANSFAC + 39256067 39256081 6.0E-06 TCATAATTTGTTACA 15 V_OCT1_B_M00342 TRANSFAC - 39252509 39252518 9.0E-06 TATGCAAAGG 10 V_OCT1_B_M00342 TRANSFAC + 39256127 39256136 2.0E-06 AATGCAAATA 10 V_OCT_Q6_M00795 TRANSFAC - 39256127 39256137 4.0E-06 GTATTTGCATT 11 V_SOX17_04_M02904 TRANSFAC + 39256031 39256047 4.0E-06 TACCCCATTCATGTATC 17 V_NEUROD_02_M01288 TRANSFAC - 39258208 39258219 5.0E-06 CAGCTGCTGTGT 12 V_AP1_Q4_01_M00926 TRANSFAC - 39254980 39254987 1.0E-05 TGAGTCAT 8 V_POU5F1_01_M01307 TRANSFAC + 39256127 39256136 1.0E-06 AATGCAAATA 10 V_TAL1ALPHAE47_01_M00066 TRANSFAC + 39254899 39254914 4.0E-06 TCGGGCAGATGGTCAG 16 V_HEN1_02_M00058 TRANSFAC + 39258113 39258134 5.0E-06 AGGGGCAGCAGCTGCTGGAGAT 22 V_HEN1_02_M00058 TRANSFAC - 39258113 39258134 8.0E-06 ATCTCCAGCAGCTGCTGCCCCT 22 V_PARP_Q3_M01211 TRANSFAC - 39255019 39255028 3.0E-06 TAAGAAATAC 10 V_FRA1_Q5_M01267 TRANSFAC - 39254980 39254987 1.0E-05 TGAGTCAT 8 V_STAT6_02_M00500 TRANSFAC + 39256050 39256057 1.0E-05 GATTTCCT 8 V_DMRT2_01_M01147 TRANSFAC + 39256070 39256085 0.0E+00 TAATTTGTTACATTCT 16 V_FOXJ2_01_M00422 TRANSFAC - 39256203 39256220 2.0E-06 CACTCAACAAACATTTAC 18 V_FOXJ2_01_M00422 TRANSFAC - 39256615 39256632 2.0E-06 TGATCAACAAACATTTTT 18 V_SIX6_01_M01345 TRANSFAC + 39256037 39256053 7.0E-06 ATTCATGTATCATGATT 17 V_SIX6_08_M02897 TRANSFAC - 39256264 39256280 0.0E+00 AAAAGATATATACATTT 17 V_SIX6_08_M02897 TRANSFAC + 39256265 39256281 1.0E-06 AATGTATATATCTTTTG 17 V_FEV_01_M02269 TRANSFAC - 39256051 39256058 1.0E-05 CAGGAAAT 8 V_AR_Q6_M00962 TRANSFAC - 39256061 39256069 6.0E-06 TGAGCACAA 9 V_BHLHB2_04_M02845 TRANSFAC - 39256111 39256133 7.0E-06 TTGCATTGCACGTGGTGGAATGA 23 V_FOXK1_03_M02752 TRANSFAC - 39256619 39256635 6.0E-06 AGATGATCAACAAACAT 17 V_PAX4_04_M00380 TRANSFAC - 39254998 39255027 2.0E-06 AAGAAATACAGCAAAATGTGTTTTTACCCT 30 V_RFX1_02_M00281 TRANSFAC - 39256167 39256184 5.0E-06 TGAGTATCATGGTAACAA 18

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.