Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TRO Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7216 trophinin chrX + 54941995 - 54947756 54947256 Transcription Factor Binding Sites   Download all TFBS in the TRO promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints GABPA_MA0062.2 JASPAR - 54947226 54947236 2.0E-06 CCGGAAGTGGT 11 TBX1_TBX_DBD_dimeric_23_1 SELEX - 54947384 54947406 5.0E-06 CTTCAAACCTTAGGGGCGTGTGG 23 SP1_C2H2_DBD_monomeric_11_1 SELEX - 54947959 54947969 8.0E-06 ACCACTCCCCC 11 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 54948178 54948194 0.0E+00 CCTTCCCCCAACACTAG 17 GABPA_ETS_full_monomeric_10_1 SELEX - 54947228 54947237 9.0E-06 GCCGGAAGTG 10 NRF1_NRF_full_dimeric_12_1 SELEX - 54948317 54948328 2.0E-06 CGCGCATGCGCC 12 NRF1_NRF_full_dimeric_12_1 SELEX + 54948403 54948414 0.0E+00 TGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 54948403 54948414 0.0E+00 TGCGCATGCGCA 12 RREB1_MA0073.1 JASPAR - 54947962 54947981 4.0E-06 TCCCCAACCAACACCACTCC 20 V_TCFE2A_04_M02927 TRANSFAC + 54948495 54948511 1.0E-06 GAAACCAGATGGCCTGG 17 V_YY1_02_M00069 TRANSFAC - 54948493 54948512 2.0E-06 CCCAGGCCATCTGGTTTCCA 20 V_ZFP740_03_M02834 TRANSFAC - 54948373 54948388 1.0E-05 CCCCACCCCCCATCTT 16 V_ZFP740_03_M02834 TRANSFAC - 54948374 54948389 8.0E-06 CCCCCACCCCCCATCT 16 V_NKX25_Q6_M02108 TRANSFAC + 54947936 54947946 7.0E-06 CACACTTGCAG 11 V_GABPA_04_M02858 TRANSFAC - 54947206 54947221 8.0E-06 CCTCTTTCCGCCTCCA 16 V_ZNF219_01_M01122 TRANSFAC - 54948067 54948078 0.0E+00 CACCCCCCTCCC 12 V_ZNF219_01_M01122 TRANSFAC - 54948380 54948391 8.0E-06 CGCCCCCACCCC 12 V_GC_01_M00255 TRANSFAC + 54947922 54947935 2.0E-06 AAAGGGCGGAGCTG 14 V_GC_01_M00255 TRANSFAC + 54948441 54948454 7.0E-06 AAGGGGTGGGGTCG 14 V_PR_01_M00954 TRANSFAC + 54948233 54948259 7.0E-06 GGGGTGGCGCCAAGATGTTCTGTTGCT 27 V_PAX9_B_M00329 TRANSFAC + 54947994 54948017 1.0E-06 GAGACGTACCGCAGAGCGGAGGGA 24 V_SP4_03_M02810 TRANSFAC - 54948425 54948441 1.0E-06 TTACACGCCCCCTCCGC 17 V_KROX_Q6_M00982 TRANSFAC - 54948380 54948393 4.0E-06 GGCGCCCCCACCCC 14 V_ER81_02_M02065 TRANSFAC - 54947228 54947237 1.0E-05 GCCGGAAGTG 10 V_MAZ_Q6_01_M02023 TRANSFAC + 54948008 54948021 9.0E-06 AGCGGAGGGAGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 54948061 54948074 9.0E-06 AGCGGAGGGAGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 54948065 54948078 7.0E-06 GAGGGAGGGGGGTG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 54948163 54948176 9.0E-06 AGCGGAGGGAGGGG 14 V_EGR1_04_M02848 TRANSFAC + 54948145 54948160 5.0E-06 TGCGGAGTGGTACTGC 16 V_GADP_01_M01258 TRANSFAC + 54947228 54947239 7.0E-06 CACTTCCGGCCA 12 V_SP1SP3_Q4_M01219 TRANSFAC - 54948427 54948437 7.0E-06 ACGCCCCCTCC 11 V_RREB1_01_M00257 TRANSFAC - 54947967 54947980 1.0E-06 CCCCAACCAACACC 14 V_KLF7_03_M02773 TRANSFAC - 54948440 54948455 1.0E-06 ACGACCCCACCCCTTT 16 V_TAL1BETAITF2_01_M00070 TRANSFAC + 54948495 54948510 5.0E-06 GAAACCAGATGGCCTG 16 V_GR_Q6_02_M01836 TRANSFAC + 54948243 54948255 6.0E-06 CAAGATGTTCTGT 13 V_LEF1_Q2_01_M01022 TRANSFAC + 54947437 54947446 8.0E-06 CATCAAAGTC 10 V_CAAT_C_M00200 TRANSFAC - 54948061 54948085 4.0E-06 CCCAATACACCCCCCTCCCTCCGCT 25 V_TFIIA_Q6_M00707 TRANSFAC + 54948025 54948036 4.0E-06 TATTAAAGGAAG 12 V_ZFP206_01_M01742 TRANSFAC - 54948318 54948328 2.0E-06 CGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 54948403 54948413 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 54948404 54948414 0.0E+00 TGCGCATGCGC 11 V_VDR_Q6_M00961 TRANSFAC - 54947878 54947889 3.0E-06 CTGTATGAACCT 12 V_NRF1_Q6_M00652 TRANSFAC + 54948319 54948328 4.0E-06 CGCATGCGCG 10 V_NRF1_Q6_M00652 TRANSFAC - 54948403 54948412 2.0E-06 CGCATGCGCA 10 V_NRF1_Q6_M00652 TRANSFAC + 54948405 54948414 2.0E-06 CGCATGCGCA 10 V_ZFP281_01_M01597 TRANSFAC + 54948185 54948195 5.0E-06 TGGGGGAAGGG 11 V_ZFP281_01_M01597 TRANSFAC + 54948378 54948388 4.0E-06 GGGGGGTGGGG 11 V_ZFP281_04_M02831 TRANSFAC - 54948375 54948389 2.0E-06 CCCCCACCCCCCATC 15 V_PR_02_M00957 TRANSFAC + 54948233 54948259 9.0E-06 GGGGTGGCGCCAAGATGTTCTGTTGCT 27 V_UF1H3BETA_Q6_M01068 TRANSFAC + 54948129 54948142 4.0E-06 GTTGGGGTAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 54948183 54948196 6.0E-06 GTTGGGGGAAGGGT 14 V_BRCA_01_M01082 TRANSFAC + 54948250 54948257 1.0E-05 TTCTGTTG 8 V_TCF4_01_M01705 TRANSFAC - 54947437 54947445 7.0E-06 ACTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.