Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

THY1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7070 Thy-1 cell surface antigen chr11 - 119293746 - 119299246 119294246 Transcription Factor Binding Sites   Download all TFBS in the THY1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX - 119298095 119298105 5.0E-06 CATGACTCACT 11 NF-kappaB_MA0061.1 JASPAR + 119292180 119292189 6.0E-06 GGGACTTCCC 10 POU3F3_POU_DBD_monomeric_12_1 SELEX + 119297147 119297158 6.0E-06 TTGCATAATTCT 12 ESR2_MA0258.1 JASPAR + 119290966 119290983 4.0E-06 ACGGGTCAGGCTGAACTC 18 POU3F2_POU_DBD_monomeric_13_1 SELEX + 119297146 119297158 3.0E-06 TTTGCATAATTCT 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 119294232 119294243 0.0E+00 GGTTTTCCCACA 12 TBX20_TBX_DBD_dimeric_19_1 SELEX + 119294034 119294052 5.0E-06 TGGTGTGAGAGTGGCAGGT 19 EWSR1-FLI1_MA0149.1 JASPAR + 119293974 119293991 1.0E-06 GGGAGAAAGGACGGCAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 119294000 119294017 6.0E-06 GGGGGTGGGGAAGGAAGA 18 NFYA_MA0060.1 JASPAR + 119293948 119293963 0.0E+00 CTCAGCCAATCAGAGG 16 NFYA_MA0060.1 JASPAR - 119297132 119297147 4.0E-06 AACAGCCAATCACATT 16 GCM1_GCM_full_dimeric_16_1 SELEX + 119291094 119291109 7.0E-06 AGACTGGCACCAGCAG 16 GCM1_GCM_full_dimeric_16_1 SELEX - 119291094 119291109 4.0E-06 CTGCTGGTGCCAGTCT 16 ZNF238_C2H2_full_monomeric_13_1 SELEX - 119292351 119292363 7.0E-06 TCGCCAGATGTTG 13 IRF1_MA0050.1 JASPAR + 119292137 119292148 7.0E-06 CAAAGTAAAACT 12 ETV2_ETS_DBD_monomeric_11_1 SELEX - 119292189 119292199 5.0E-06 AACAGGAAATG 11 MYBL2_MYB_DBD_monomeric_11_1 SELEX + 119292222 119292232 9.0E-06 AAAACCGTTTC 11 ESR1_MA0112.2 JASPAR - 119290968 119290987 3.0E-06 GTACGAGTTCAGCCTGACCC 20 SP1_MA0079.2 JASPAR + 119293312 119293321 3.0E-06 CCCCTCCCCC 10 ELK1_ETS_full_dimeric_17_1 SELEX - 119294049 119294065 7.0E-06 CCCTTCCGCCGCAACCT 17 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 119298248 119298264 5.0E-06 TGCTTTTTTGGAGTTCA 17 SOX7_HMG_full_dimeric_17_1 SELEX - 119292144 119292160 1.0E-05 TAACAGATACAGAGTTT 17 TBX20_TBX_full_dimeric_16_1 SELEX + 119294034 119294049 4.0E-06 TGGTGTGAGAGTGGCA 16 POU3F1_POU_DBD_monomeric_12_2 SELEX + 119297147 119297158 6.0E-06 TTGCATAATTCT 12 FEV_MA0156.1 JASPAR - 119292190 119292197 1.0E-05 CAGGAAAT 8 JDP2_bZIP_full_dimeric_9_1 SELEX - 119298096 119298104 7.0E-06 ATGACTCAC 9 POU2F1_POU_DBD_monomeric_12_1 SELEX - 119297144 119297155 1.0E-05 ATTATGCAAACA 12 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 119294002 119294012 8.0E-06 CTTCCCCACCC 11 Sox2_MA0143.1 JASPAR + 119297086 119297100 1.0E-05 GCTTTGTAATGTCAA 15 RARG_nuclearreceptor_full_dimeric_16_1 SELEX - 119291066 119291081 3.0E-06 GAGGGCAGAAGGTGAC 16 IRF2_MA0051.1 JASPAR + 119294236 119294253 6.0E-06 GGAAAACCAAAGTGTAAG 18 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 119292342 119292355 2.0E-06 AAAAACAACCAACA 14 V_AP2ALPHA_Q6_M01857 TRANSFAC + 119293213 119293223 9.0E-06 AGCCCCCGGCG 11 V_NFKB_C_M00208 TRANSFAC + 119292179 119292190 1.0E-06 AGGGACTTCCCA 12 V_NFKB_Q6_01_M00774 TRANSFAC - 119292179 119292194 2.0E-06 GAAATGGGAAGTCCCT 16 V_ATF5_01_M01295 TRANSFAC + 119293226 119293236 6.0E-06 CCTCATCCTTA 11 V_ATF5_01_M01295 TRANSFAC - 119294009 119294019 9.0E-06 TCTCTTCCTTC 11 V_ESR1_01_M02261 TRANSFAC - 119290968 119290987 3.0E-06 GTACGAGTTCAGCCTGACCC 20 V_CEBP_Q3_M00770 TRANSFAC - 119297146 119297157 2.0E-06 GAATTATGCAAA 12 V_NF1A_Q6_M02103 TRANSFAC - 119292245 119292260 9.0E-06 TATGCTATATGCCAGT 16 V_ETS_B_M00340 TRANSFAC - 119292186 119292199 8.0E-06 AACAGGAAATGGGA 14 V_FOXO4_02_M00476 TRANSFAC - 119292339 119292352 8.0E-06 TGGTTGTTTTTCTT 14 V_HOXA13_02_M01297 TRANSFAC + 119292139 119292147 8.0E-06 AAGTAAAAC 9 V_RELBP52_01_M01239 TRANSFAC - 119292205 119292214 6.0E-06 GGGGATTTTC 10 V_MAFB_03_M02879 TRANSFAC + 119297144 119297158 5.0E-06 TGTTTGCATAATTCT 15 V_RP58_01_M00532 TRANSFAC + 119292350 119292361 3.0E-06 CCAACATCTGGC 12 V_NKX25_Q6_M02108 TRANSFAC - 119295213 119295223 7.0E-06 CCCACTTGCAA 11 V_CEBP_01_M00159 TRANSFAC + 119297144 119297156 7.0E-06 TGTTTGCATAATT 13 V_P50P50_Q3_M01223 TRANSFAC + 119292178 119292190 1.0E-05 TAGGGACTTCCCA 13 V_CEBP_Q2_M00190 TRANSFAC + 119297144 119297157 8.0E-06 TGTTTGCATAATTC 14 V_SP1_03_M02281 TRANSFAC + 119293312 119293321 3.0E-06 CCCCTCCCCC 10 V_SP1_02_M01303 TRANSFAC + 119293994 119294004 5.0E-06 GGGGTGGGGGG 11 V_NFY_Q6_01_M00775 TRANSFAC + 119293947 119293959 1.0E-06 GCTCAGCCAATCA 13 V_CMYC_02_M01154 TRANSFAC + 119298165 119298176 7.0E-06 GGCCACGTGCCT 12 V_BRN2_01_M00145 TRANSFAC + 119293227 119293242 3.0E-06 CTCATCCTTAATCCAT 16 V_HELIOSA_01_M01003 TRANSFAC - 119292389 119292399 9.0E-06 CTTAGGGATTT 11 V_CEBPB_01_M00109 TRANSFAC + 119298219 119298232 2.0E-06 AGCTTGTGAAATGT 14 V_NFY_C_M00209 TRANSFAC - 119293948 119293961 9.0E-06 TCTGATTGGCTGAG 14 V_BACH1_01_M00495 TRANSFAC + 119298093 119298107 4.0E-06 CCAGTGAGTCATGCC 15 V_ZNF219_01_M01122 TRANSFAC - 119293995 119294006 2.0E-06 CACCCCCCACCC 12 V_CEBPB_02_M00117 TRANSFAC + 119297144 119297157 3.0E-06 TGTTTGCATAATTC 14 V_NFKB_Q6_M00194 TRANSFAC + 119292178 119292191 9.0E-06 TAGGGACTTCCCAT 14 V_IK1_01_M00086 TRANSFAC + 119294231 119294243 1.0E-05 CTGTGGGAAAACC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 119293308 119293321 2.0E-06 GGGGGAGGGGAGAG 14 V_JUNDM2_04_M02876 TRANSFAC + 119296977 119296992 5.0E-06 GTTTATTAGTCACATA 16 V_NFE4_Q5_M02105 TRANSFAC - 119293920 119293931 8.0E-06 CCCCCTCTCCTC 12 V_SOX12_04_M02900 TRANSFAC - 119290953 119290968 4.0E-06 CGTGAGACAAAGAAGC 16 V_ERBETA_Q5_M01875 TRANSFAC + 119290970 119290984 1.0E-05 GTCAGGCTGAACTCG 15 V_RREB1_01_M00257 TRANSFAC - 119293989 119294002 5.0E-06 CCCCACCCCACCCT 14 V_RREB1_01_M00257 TRANSFAC - 119293996 119294009 7.0E-06 CCCCACCCCCCACC 14 V_STAT4_Q5_M02117 TRANSFAC - 119297119 119297128 4.0E-06 TTACAGGAAA 10 V_SMAD4_Q6_M00733 TRANSFAC + 119294564 119294578 3.0E-06 CTGGTCCAGACAGCT 15 V_STAT3_03_M01595 TRANSFAC - 119297115 119297130 8.0E-06 TCTTACAGGAAACGGG 16 V_SOX11_03_M02795 TRANSFAC + 119292156 119292172 8.0E-06 TGTTAAACAAAGACTCC 17 V_MZF1_02_M00084 TRANSFAC - 119293283 119293295 6.0E-06 GAGAGAGGGGGAA 13 V_BLIMP1_Q6_M01066 TRANSFAC - 119295755 119295770 9.0E-06 AAGAGTGGGAAACGGA 16 V_FOXO1_Q5_M01216 TRANSFAC + 119292342 119292350 5.0E-06 AAAAACAAC 9 V_CETS1P54_03_M01078 TRANSFAC - 119292186 119292201 4.0E-06 TGAACAGGAAATGGGA 16 V_IRF7_01_M00453 TRANSFAC + 119294234 119294251 5.0E-06 TGGGAAAACCAAAGTGTA 18 V_TFIII_Q6_M00706 TRANSFAC - 119293202 119293210 6.0E-06 AGAGGGAGG 9 V_HFH8_01_M00294 TRANSFAC + 119298227 119298239 6.0E-06 AAATGTTTGTACG 13 V_AP1_Q4_01_M00926 TRANSFAC + 119298097 119298104 1.0E-05 TGAGTCAT 8 V_CAAT_01_M00254 TRANSFAC + 119293948 119293959 2.0E-06 CTCAGCCAATCA 12 V_CAAT_01_M00254 TRANSFAC - 119297136 119297147 3.0E-06 AACAGCCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC + 119293950 119293960 1.0E-06 CAGCCAATCAG 11 V_NFYC_Q5_M02107 TRANSFAC + 119293950 119293963 0.0E+00 CAGCCAATCAGAGG 14 V_NFYC_Q5_M02107 TRANSFAC - 119297132 119297145 4.0E-06 CAGCCAATCACATT 14 V_ZBTB3_03_M02825 TRANSFAC - 119295174 119295190 9.0E-06 AGTGCCACTGCAGTATC 17 V_PLAG1_01_M01778 TRANSFAC + 119292746 119292761 1.0E-06 GAGGCCACAGAAGGGG 16 V_PARP_Q3_M01211 TRANSFAC + 119292338 119292347 8.0E-06 TAAGAAAAAC 10 V_PXR_Q2_M00964 TRANSFAC + 119292333 119292344 4.0E-06 GGGGTTAAGAAA 12 V_NFY_01_M00287 TRANSFAC + 119293948 119293963 0.0E+00 CTCAGCCAATCAGAGG 16 V_NFY_01_M00287 TRANSFAC - 119297132 119297147 4.0E-06 AACAGCCAATCACATT 16 V_FRA1_Q5_M01267 TRANSFAC + 119298097 119298104 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 119293465 119293476 1.0E-06 CGGGGAGGAGGA 12 V_E2_Q6_01_M00928 TRANSFAC + 119292222 119292237 4.0E-06 AAAACCGTTTCCGTTT 16 V_FOXO3_01_M00477 TRANSFAC - 119292339 119292352 9.0E-06 TGGTTGTTTTTCTT 14 V_ETS1_B_M00339 TRANSFAC - 119292184 119292198 1.0E-05 ACAGGAAATGGGAAG 15 V_ZFP281_01_M01597 TRANSFAC - 119293312 119293322 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 119293999 119294009 4.0E-06 GGGGGGTGGGG 11 V_NFKAPPAB_01_M00054 TRANSFAC + 119292180 119292189 7.0E-06 GGGACTTCCC 10 V_SOX2_01_M02246 TRANSFAC + 119297086 119297100 1.0E-05 GCTTTGTAATGTCAA 15 V_ZFP281_04_M02831 TRANSFAC - 119293996 119294010 0.0E+00 TCCCCACCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC - 119293997 119294011 2.0E-06 TTCCCCACCCCCCAC 15 V_SRF_06_M02916 TRANSFAC + 119292336 119292352 2.0E-06 GTTAAGAAAAACAACCA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 119293974 119293991 1.0E-06 GGGAGAAAGGACGGCAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 119294000 119294017 6.0E-06 GGGGGTGGGGAAGGAAGA 18 V_FOXJ2_01_M00422 TRANSFAC - 119297139 119297156 9.0E-06 AATTATGCAAACAGCCAA 18 V_VDR_Q3_M00444 TRANSFAC - 119293275 119293289 1.0E-05 GGGGGAAGGGGGACT 15 V_EKLF_Q5_M01874 TRANSFAC - 119293988 119293997 9.0E-06 CCCCACCCTG 10 V_GSC_01_M01428 TRANSFAC + 119293229 119293245 9.0E-06 CATCCTTAATCCATTTC 17 V_DR3_Q4_M00966 TRANSFAC + 119297015 119297035 1.0E-06 ACTGCACGCCATGAACTGCTT 21 V_FOXO4_01_M00472 TRANSFAC + 119292342 119292352 8.0E-06 AAAAACAACCA 11 V_UF1H3BETA_Q6_M01068 TRANSFAC - 119293311 119293324 4.0E-06 GACGGGGGAGGGGA 14 V_CEBP_Q2_01_M00912 TRANSFAC + 119297146 119297157 1.0E-06 TTTGCATAATTC 12 V_NFYA_Q5_M02106 TRANSFAC + 119293950 119293963 0.0E+00 CAGCCAATCAGAGG 14 V_NFYA_Q5_M02106 TRANSFAC - 119297132 119297145 3.0E-06 CAGCCAATCACATT 14 V_FEV_01_M02269 TRANSFAC - 119292190 119292197 1.0E-05 CAGGAAAT 8 V_STAT1_Q6_M01823 TRANSFAC - 119297119 119297128 4.0E-06 TTACAGGAAA 10 V_PAX4_04_M00380 TRANSFAC - 119297130 119297159 1.0E-06 CAGAATTATGCAAACAGCCAATCACATTCT 30 V_ESR2_01_M02377 TRANSFAC + 119290966 119290983 4.0E-06 ACGGGTCAGGCTGAACTC 18 V_CEBPA_Q6_M01866 TRANSFAC - 119297145 119297157 6.0E-06 GAATTATGCAAAC 13 V_OCT4_01_M01125 TRANSFAC + 119297087 119297101 6.0E-06 CTTTGTAATGTCAAA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.