Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TFF3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 7033 trefoil factor 3 (intestinal) chr21 - 43735206 - 43740706 43735706 Transcription Factor Binding Sites   Download all TFBS in the TFF3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 43733899 43733914 0.0E+00 GTGAATATTTAAAGAG 16 POU2F1_POU_DBD_dimeric_14_1 SELEX + 43733898 43733911 4.0E-06 TGTGAATATTTAAA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 43733898 43733911 1.0E-06 TTTAAATATTCACA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 43733760 43733771 9.0E-06 TGGCAGCTGACA 12 FOXA1_MA0148.1 JASPAR + 43735555 43735565 4.0E-06 TGTTTGCACAG 11 POU3F2_POU_DBD_monomeric_13_1 SELEX + 43733898 43733910 7.0E-06 TGTGAATATTTAA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX + 43733900 43733910 9.0E-06 TGAATATTTAA 11 POU3F4_POU_DBD_monomeric_11_1 SELEX - 43735540 43735550 5.0E-06 TGCATAAATGA 11 TFAP2B_TFAP_DBD_dimeric_11_1 SELEX + 43735904 43735914 1.0E-05 AGCCCCAGGCT 11 EWSR1-FLI1_MA0149.1 JASPAR + 43739599 43739616 1.0E-06 GGGAGGAAGGAAGTAGGA 18 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 43733760 43733771 8.0E-06 TGGCAGCTGACA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 43733760 43733771 8.0E-06 TGGCAGCTGACA 12 MAFF_bZIP_DBD_dimeric_15_1 SELEX + 43739773 43739787 8.0E-06 TTCCTGAGTCATCAC 15 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 43735904 43735914 9.0E-06 AGCCCCAGGCT 11 Spz1_MA0111.1 JASPAR - 43733862 43733872 1.0E-06 AGGGTTTCAGC 11 POU4F3_POU_DBD_monomeric_16_1 SELEX + 43733899 43733914 1.0E-06 GTGAATATTTAAAGAG 16 POU3F3_POU_DBD_monomeric_13_1 SELEX + 43735098 43735110 7.0E-06 TATATTGTAATTT 13 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 43733898 43733911 1.0E-06 TGTGAATATTTAAA 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 43733898 43733911 1.0E-06 TTTAAATATTCACA 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 43733899 43733910 7.0E-06 GTGAATATTTAA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 43733899 43733910 9.0E-06 TTAAATATTCAC 12 SRY_MA0084.1 JASPAR - 43736655 43736663 7.0E-06 TAAAACAAT 9 POU1F1_POU_DBD_monomeric_17_1 SELEX + 43733896 43733912 2.0E-06 CCTGTGAATATTTAAAG 17 Foxd3_MA0041.1 JASPAR + 43735574 43735585 1.0E-06 GATTGTTTGCTT 12 POU3F1_POU_DBD_monomeric_12_2 SELEX + 43733899 43733910 1.0E-05 GTGAATATTTAA 12 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 43735904 43735914 8.0E-06 AGCCCCAGGCT 11 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 43733899 43733910 5.0E-06 GTGAATATTTAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 43733899 43733910 8.0E-06 TTAAATATTCAC 12 FOXI1_forkhead_full_dimeric_17_1 SELEX - 43736656 43736672 4.0E-06 ATGTTGTTATAAAACAA 17 ELF5_MA0136.1 JASPAR - 43739605 43739613 4.0E-06 TACTTCCTT 9 HMBOX1_homeodomain_DBD_monomeric_10_1 SELEX - 43737756 43737765 4.0E-06 ACTAGTTAAA 10 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 43735904 43735914 6.0E-06 AGCCCCAGGCT 11 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 43733760 43733771 1.0E-05 TGGCAGCTGACA 12 POU4F1_POU_DBD_monomeric_14_1 SELEX + 43733899 43733912 2.0E-06 GTGAATATTTAAAG 14 V_MEQ_01_M02049 TRANSFAC - 43735763 43735771 9.0E-06 GACACACAT 9 V_HNF3B_01_M00131 TRANSFAC + 43735572 43735586 3.0E-06 TGGATTGTTTGCTTG 15 V_SPI1_01_M01203 TRANSFAC + 43736586 43736602 7.0E-06 ACAAACAGGAACTGACT 17 V_E2A_Q6_01_M02088 TRANSFAC - 43733735 43733747 8.0E-06 GGACAGCTGCAAA 13 V_FREAC7_01_M00293 TRANSFAC + 43736581 43736596 8.0E-06 TTAACACAAACAGGAA 16 V_GEN_INI_B_M00315 TRANSFAC + 43735538 43735545 1.0E-05 CCTCATTT 8 V_TCF3_01_M01594 TRANSFAC - 43737817 43737829 3.0E-06 CCTTTGTTATTCC 13 V_CDX2_Q5_01_M01659 TRANSFAC - 43735540 43735550 8.0E-06 TGCATAAATGA 11 V_BACH2_01_M00490 TRANSFAC + 43739775 43739785 7.0E-06 CCTGAGTCATC 11 V_SRY_07_M02813 TRANSFAC + 43735097 43735112 6.0E-06 CTATATTGTAATTTAG 16 V_SRY_07_M02813 TRANSFAC - 43735097 43735112 2.0E-06 CTAAATTACAATATAG 16 V_FOXD3_01_M00130 TRANSFAC + 43735574 43735585 2.0E-06 GATTGTTTGCTT 12 V_IK_Q5_M01169 TRANSFAC - 43735663 43735672 6.0E-06 TTTGGGAGAG 10 V_ZFP740_04_M02938 TRANSFAC + 43737850 43737866 3.0E-06 AGAGTCCCCCCGCAAAG 17 V_ZFP740_03_M02834 TRANSFAC - 43739871 43739886 1.0E-06 TCCCCACCCCCATTTG 16 V_SOX11_04_M02899 TRANSFAC + 43736652 43736665 2.0E-06 GGAATTGTTTTATA 14 V_GLI1_01_M01702 TRANSFAC - 43739636 43739646 4.0E-06 GGCCACCCACG 11 V_HFH4_01_M00742 TRANSFAC + 43735574 43735586 9.0E-06 GATTGTTTGCTTG 13 V_PITX2_Q6_M02114 TRANSFAC + 43740053 43740062 7.0E-06 TCTAAACCCA 10 V_COUPTF_Q6_M01036 TRANSFAC - 43735667 43735689 9.0E-06 TGAACTGACCTCTCCCCTTTGGG 23 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 43735824 43735839 1.0E-06 CAGGACCAGGGTGTGG 16 V_PU1_Q4_M01172 TRANSFAC - 43739601 43739619 9.0E-06 ACTTCCTACTTCCTTCCTC 19 V_ZFP281_05_M02935 TRANSFAC - 43733671 43733687 7.0E-06 ATGTCACCCCCAAGGAG 17 V_SOX21_03_M02803 TRANSFAC + 43735097 43735112 2.0E-06 CTATATTGTAATTTAG 16 V_SOX21_03_M02803 TRANSFAC - 43735097 43735112 2.0E-06 CTAAATTACAATATAG 16 V_ZFP691_03_M02833 TRANSFAC - 43739996 43740012 3.0E-06 CACCAAGTGCTCCTTGA 17 V_OCT2_02_M01761 TRANSFAC + 43733900 43733909 4.0E-06 TGAATATTTA 10 V_MEF2A_Q6_M02024 TRANSFAC + 43733904 43733913 4.0E-06 TATTTAAAGA 10 V_PPARGRXRA_01_M02262 TRANSFAC + 43735670 43735684 7.0E-06 AAAGGGGAGAGGTCA 15 V_ELF4_04_M02850 TRANSFAC + 43736622 43736638 9.0E-06 GCTCTTTTAAAAACTAA 17 V_GLI3_02_M01704 TRANSFAC - 43739636 43739646 9.0E-06 GGCCACCCACG 11 V_ROAZ_01_M00467 TRANSFAC + 43739631 43739644 8.0E-06 GCACCCGTGGGTGG 14 V_ROAZ_01_M00467 TRANSFAC - 43739631 43739644 8.0E-06 CCACCCACGGGTGC 14 V_SOX7_03_M02807 TRANSFAC + 43735074 43735095 3.0E-06 AATGTGGAACAATGCATAAAGA 22 V_GEN_INI3_B_M00314 TRANSFAC + 43735538 43735545 1.0E-05 CCTCATTT 8 V_FOXA2_02_M02853 TRANSFAC + 43737816 43737830 0.0E+00 AGGAATAACAAAGGT 15 V_PR_Q2_M00960 TRANSFAC - 43735619 43735628 7.0E-06 GAGAGAACAG 10 V_AP1_Q6_01_M00925 TRANSFAC - 43739776 43739784 7.0E-06 ATGACTCAG 9 V_FOXK1_04_M02856 TRANSFAC + 43736660 43736674 1.0E-06 TTTATAACAACATAT 15 V_HNF3A_01_M01261 TRANSFAC - 43735576 43735585 7.0E-06 AAGCAAACAA 10 V_HNF3_Q6_M00791 TRANSFAC - 43735575 43735587 8.0E-06 CCAAGCAAACAAT 13 V_CDX2_Q5_M00729 TRANSFAC + 43736655 43736668 1.0E-06 ATTGTTTTATAACA 14 V_MEF2_03_M00232 TRANSFAC - 43733898 43733919 6.0E-06 TGCCTCTCTTTAAATATTCACA 22 V_SOX18_03_M02801 TRANSFAC + 43736651 43736666 2.0E-06 AGGAATTGTTTTATAA 16 V_SZF11_01_M01109 TRANSFAC - 43733860 43733874 0.0E+00 CGAGGGTTTCAGCAG 15 V_ASCL2_03_M02737 TRANSFAC + 43735558 43735574 8.0E-06 TTGCACAGCTGCTCTGG 17 V_SOX12_04_M02900 TRANSFAC - 43735063 43735078 4.0E-06 ACATTTACAAAGAAAA 16 V_SPIB_01_M01204 TRANSFAC + 43736586 43736602 1.0E-06 ACAAACAGGAACTGACT 17 V_AP1_C_M00199 TRANSFAC - 43739776 43739784 6.0E-06 ATGACTCAG 9 V_MEF2_Q6_01_M00941 TRANSFAC + 43736621 43736632 9.0E-06 TGCTCTTTTAAA 12 V_ATF3_Q6_M00513 TRANSFAC - 43737874 43737887 7.0E-06 CTCTGACATGATCC 14 V_STAF_02_M00264 TRANSFAC + 43735452 43735472 7.0E-06 CAGCCCCAGCATGCAGAGCGC 21 V_AP1_01_M00517 TRANSFAC + 43735952 43735964 7.0E-06 GAGTGAGTCAGGA 13 V_OCT4_02_M01124 TRANSFAC - 43736576 43736590 9.0E-06 TTTGTGTTAAAAATG 15 V_SOX11_03_M02795 TRANSFAC + 43735076 43735092 1.0E-05 TGTGGAACAATGCATAA 17 V_MAF_Q6_01_M00983 TRANSFAC + 43739774 43739784 1.0E-06 TCCTGAGTCAT 11 V_NEUROD_02_M01288 TRANSFAC + 43733736 43733747 1.0E-06 TTGCAGCTGTCC 12 V_GLI3_01_M01596 TRANSFAC + 43739637 43739647 7.0E-06 GTGGGTGGCCC 11 V_MYOD_Q6_02_M02100 TRANSFAC + 43739682 43739690 8.0E-06 CAGCTGTCT 9 V_GLI2_01_M01703 TRANSFAC - 43739636 43739646 1.0E-05 GGCCACCCACG 11 V_ZBTB3_03_M02825 TRANSFAC + 43736556 43736572 8.0E-06 TGAGCCACTGCACTCGG 17 V_FOXL1_02_M02857 TRANSFAC + 43736658 43736673 2.0E-06 GTTTTATAACAACATA 16 V_T3R_Q6_M00963 TRANSFAC + 43733707 43733715 7.0E-06 CCTGTCCTT 9 V_GEN_INI2_B_M00313 TRANSFAC + 43735538 43735545 1.0E-05 CCTCATTT 8 V_NRF2_Q4_M00821 TRANSFAC + 43739773 43739785 3.0E-06 TTCCTGAGTCATC 13 V_FOX_Q2_M00809 TRANSFAC + 43735574 43735586 3.0E-06 GATTGTTTGCTTG 13 V_PLZF_02_M01075 TRANSFAC + 43735060 43735088 5.0E-06 CCTTTTTCTTTGTAAATGTGGAACAATGC 29 V_ZFP281_01_M01597 TRANSFAC + 43739875 43739885 1.0E-06 TGGGGGTGGGG 11 V_LEF1TCF1_Q4_M00978 TRANSFAC - 43737819 43737829 7.0E-06 CCTTTGTTATT 11 V_OCT1_07_M00248 TRANSFAC + 43735098 43735109 1.0E-06 TATATTGTAATT 12 V_SOX8_03_M02808 TRANSFAC - 43735076 43735092 8.0E-06 TTATGCATTGTTCCACA 17 V_SOX8_03_M02808 TRANSFAC + 43736649 43736665 5.0E-06 TCAGGAATTGTTTTATA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 43739599 43739616 1.0E-06 GGGAGGAAGGAAGTAGGA 18 V_FOXJ2_01_M00422 TRANSFAC - 43735572 43735589 8.0E-06 CCCCAAGCAAACAATCCA 18 V_VMAF_01_M00035 TRANSFAC - 43739771 43739789 6.0E-06 TCGTGATGACTCAGGAAGG 19 V_SOX4_01_M01308 TRANSFAC + 43737822 43737829 1.0E-05 AACAAAGG 8 V_EKLF_Q5_M01874 TRANSFAC - 43735830 43735839 2.0E-06 CCACACCCTG 10 V_SOX2_Q6_M01272 TRANSFAC - 43737818 43737833 0.0E+00 GTCACCTTTGTTATTC 16 V_HNF3B_Q6_M02014 TRANSFAC + 43735576 43735584 6.0E-06 TTGTTTGCT 9 V_SOX12_03_M02796 TRANSFAC + 43736653 43736666 4.0E-06 GAATTGTTTTATAA 14 V_SRY_05_M02917 TRANSFAC - 43736650 43736666 1.0E-06 TTATAAAACAATTCCTG 17 V_ELF5_04_M02241 TRANSFAC - 43739605 43739613 4.0E-06 TACTTCCTT 9 V_SOX5_07_M02909 TRANSFAC + 43736649 43736665 3.0E-06 TCAGGAATTGTTTTATA 17 V_TCF11MAFG_01_M00284 TRANSFAC + 43736673 43736694 8.0E-06 ATCAGATGAGACAGCGATGATT 22 V_SMAD1_01_M01590 TRANSFAC + 43737819 43737830 2.0E-06 AATAACAAAGGT 12 PPARG_RXRA_MA0065.2 JASPAR + 43735670 43735684 7.0E-06 AAAGGGGAGAGGTCA 15 V_SOX14_03_M02798 TRANSFAC + 43735097 43735112 7.0E-06 CTATATTGTAATTTAG 16 V_SOX14_03_M02798 TRANSFAC - 43735097 43735112 3.0E-06 CTAAATTACAATATAG 16 V_NANOG_02_M01247 TRANSFAC + 43737815 43737834 2.0E-06 AAGGAATAACAAAGGTGACA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.