Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TFE3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 7030 transcription factor binding to IGHM enhancer 3 chrX - 48900490 - 48905990 48900990 TFE3_bHLH_DBD_dimeric_10_1 Transcription Factor Binding Sites   Download all TFBS in the TFE3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 48901422 48901439 8.0E-06 ATTACAAATATTGGCCGA 18 POU2F1_POU_DBD_dimeric_14_1 SELEX + 48897731 48897744 7.0E-06 CTTGCATATGAATG 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 48897731 48897744 3.0E-06 CATTCATATGCAAG 14 POU2F1_POU_DBD_dimeric_14_1 SELEX + 48899329 48899342 1.0E-06 GATGAATATGCATC 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 48899329 48899342 1.0E-06 GATGCATATTCATC 14 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 48897525 48897536 8.0E-06 AATGTGCTGAGT 12 EWSR1-FLI1_MA0149.1 JASPAR - 48897472 48897489 0.0E+00 GGAAGAGGGGCAGGAAGA 18 EWSR1-FLI1_MA0149.1 JASPAR - 48899424 48899441 3.0E-06 GAGAGGAAGGAAGACAGA 18 EWSR1-FLI1_MA0149.1 JASPAR - 48899428 48899445 3.0E-06 TGAGGAGAGGAAGGAAGA 18 MAFF_bZIP_DBD_dimeric_15_1 SELEX - 48897519 48897533 4.0E-06 GTGCTGAGTCATCGG 15 KLF13_C2H2_full_monomeric_18_1 SELEX + 48901247 48901264 8.0E-06 GAACCACGCCTCTATGTT 18 Pax4_MA0068.1 JASPAR + 48898322 48898351 7.0E-06 GAATAATAAGAACGCCTGCATCCCAACCCC 30 LEF1_HMG_DBD_monomeric_15_1 SELEX + 48899761 48899775 9.0E-06 GAAGATAAAAAGAAA 15 CUX1_CUT_DBD_dimeric_18_1 SELEX + 48899753 48899770 9.0E-06 ATCGAAAAGAAGATAAAA 18 TCF4_bHLH_full_dimeric_10_1 SELEX - 48899936 48899945 5.0E-06 CACACCTGTT 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 48897731 48897744 9.0E-06 CATTCATATGCAAG 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 48899329 48899342 1.0E-06 GATGAATATGCATC 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 48899329 48899342 3.0E-06 GATGCATATTCATC 14 SREBF2_bHLH_DBD_dimeric_10_1 SELEX - 48897369 48897378 6.0E-06 ATCACCTGAC 10 SP1_MA0079.2 JASPAR + 48900826 48900835 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 48901002 48901011 9.0E-06 CCCCTCCTCC 10 POU2F3_POU_DBD_dimeric_12_1 SELEX - 48897732 48897743 4.0E-06 ATTCATATGCAA 12 POU2F3_POU_DBD_dimeric_12_1 SELEX + 48899330 48899341 0.0E+00 ATGAATATGCAT 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 48899330 48899341 0.0E+00 ATGCATATTCAT 12 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 48901424 48901437 9.0E-06 GGCCAATATTTGTA 14 Mafb_bZIP_DBD_dimeric_17_1 SELEX + 48897518 48897534 6.0E-06 GCCGATGACTCAGCACA 17 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 48897518 48897534 4.0E-06 TGTGCTGAGTCATCGGC 17 SP4_C2H2_full_monomeric_17_1 SELEX + 48901277 48901293 9.0E-06 GGAGCCACGCCCTCTCT 17 Srebf1_bHLH_DBD_dimeric_10_1 SELEX - 48897369 48897378 5.0E-06 ATCACCTGAC 10 MAFK_bZIP_full_dimeric_15_1 SELEX - 48897519 48897533 1.0E-06 GTGCTGAGTCATCGG 15 SOX9_HMG_full_dimeric_16_3 SELEX + 48899330 48899345 3.0E-06 ATGAATATGCATCCTT 16 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 48897516 48897536 4.0E-06 GGGCCGATGACTCAGCACATT 21 MAFK_bZIP_DBD_dimeric_21_1 SELEX - 48897516 48897536 5.0E-06 AATGTGCTGAGTCATCGGCCC 21 MZF1_5-13_MA0057.1 JASPAR - 48897486 48897495 4.0E-06 GGAGGGGGAA 10 MZF1_5-13_MA0057.1 JASPAR - 48900999 48901008 4.0E-06 GGAGGGGGAA 10 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 48899667 48899679 8.0E-06 AGGGGATCCACCC 13 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 48897675 48897689 0.0E+00 GGCCACGCCCTATCT 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 48901199 48901213 3.0E-06 GACCACGCCCTCAGG 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 48901279 48901293 4.0E-06 AGCCACGCCCTCTCT 15 ERF_ETS_DBD_monomeric_10_1 SELEX + 48901037 48901046 9.0E-06 ACAGGAAGTG 10 MAFG_bZIP_full_dimeric_21_1 SELEX + 48897516 48897536 4.0E-06 GGGCCGATGACTCAGCACATT 21 MAFG_bZIP_full_dimeric_21_1 SELEX - 48897516 48897536 4.0E-06 AATGTGCTGAGTCATCGGCCC 21 JDP2_bZIP_full_dimeric_9_1 SELEX - 48900918 48900926 7.0E-06 ATGACTCAC 9 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 48897732 48897743 6.0E-06 TTGCATATGAAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 48897732 48897743 3.0E-06 ATTCATATGCAA 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 48899330 48899341 0.0E+00 ATGAATATGCAT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 48899330 48899341 0.0E+00 ATGCATATTCAT 12 Pou5f1_MA0142.1 JASPAR - 48897730 48897744 0.0E+00 CATTCATATGCAAGT 15 TEAD1_TEA_full_dimeric_17_1 SELEX + 48900086 48900102 8.0E-06 GCATATCTGAGATACCT 17 MAFK_bZIP_full_monomeric_12_1 SELEX - 48897526 48897537 2.0E-06 AAATGTGCTGAG 12 REST_MA0138.2 JASPAR + 48899708 48899728 1.0E-06 TCCAGCTCTATGGACAGATTC 21 POU3F3_POU_DBD_dimeric_12_1 SELEX + 48897732 48897743 8.0E-06 TTGCATATGAAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 48897732 48897743 6.0E-06 ATTCATATGCAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX + 48899330 48899341 0.0E+00 ATGAATATGCAT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 48899330 48899341 1.0E-06 ATGCATATTCAT 12 NRF1_NRF_full_dimeric_12_1 SELEX + 48901344 48901355 5.0E-06 TGCGCCTGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 48901344 48901355 5.0E-06 TGCGCAGGCGCA 12 Sox2_MA0143.1 JASPAR - 48897731 48897745 5.0E-06 CCATTCATATGCAAG 15 SNAI2_C2H2_DBD_monomeric_9_1 SELEX + 48899936 48899944 3.0E-06 AACAGGTGT 9 NFE2L2_MA0150.1 JASPAR + 48897522 48897532 0.0E+00 ATGACTCAGCA 11 V_MEQ_01_M02049 TRANSFAC + 48899317 48899325 7.0E-06 AACACACAC 9 V_XVENT1_01_M00445 TRANSFAC - 48901219 48901231 3.0E-06 CGCCTATTTGTCG 13 V_EBF_Q6_M00977 TRANSFAC + 48898307 48898317 7.0E-06 GTCCCTTAGGA 11 V_FLI1_Q6_M01208 TRANSFAC + 48901038 48901048 0.0E+00 CAGGAAGTGAC 11 V_POU3F3_01_M03090 TRANSFAC + 48897727 48897743 1.0E-05 AACACTTGCATATGAAT 17 V_AREB6_03_M00414 TRANSFAC - 48899935 48899946 7.0E-06 CCACACCTGTTA 12 V_BACH2_01_M00490 TRANSFAC + 48900917 48900927 4.0E-06 TGTGAGTCATC 11 V_MAFK_03_M02776 TRANSFAC - 48897524 48897538 6.0E-06 TAAATGTGCTGAGTC 15 V_MAFK_03_M02776 TRANSFAC - 48898316 48898330 9.0E-06 TTATTATTCTGACTC 15 V_MAFB_05_M02775 TRANSFAC - 48897521 48897537 6.0E-06 AAATGTGCTGAGTCATC 17 V_HOXA3_01_M00395 TRANSFAC + 48897846 48897854 7.0E-06 CCTAATTTT 9 V_POU5F1_02_M02245 TRANSFAC - 48897730 48897744 0.0E+00 CATTCATATGCAAGT 15 V_ZFP740_04_M02938 TRANSFAC + 48899731 48899747 7.0E-06 GATTACCCCCAGGAGCT 17 V_OCTAMER_01_M01324 TRANSFAC + 48897727 48897743 1.0E-05 AACACTTGCATATGAAT 17 V_OCT1_01_M00135 TRANSFAC - 48897725 48897743 5.0E-06 ATTCATATGCAAGTGTTTC 19 V_GABPA_04_M02858 TRANSFAC + 48897481 48897496 1.0E-06 CCCTCTTCCCCCTCCC 16 V_SP1_03_M02281 TRANSFAC + 48900826 48900835 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 48901002 48901011 9.0E-06 CCCCTCCTCC 10 V_PRX2_Q2_M02115 TRANSFAC + 48901317 48901325 8.0E-06 TAATATTAA 9 V_CEBPB_01_M00109 TRANSFAC - 48897456 48897469 0.0E+00 GTATTGTGAAATCT 14 V_CEBPB_01_M00109 TRANSFAC + 48899686 48899699 4.0E-06 GGATGGTGCAATCT 14 V_OCT2_02_M01761 TRANSFAC + 48899331 48899340 1.0E-06 TGAATATGCA 10 V_OCT2_02_M01761 TRANSFAC - 48899331 48899340 2.0E-06 TGCATATTCA 10 V_AP1_Q6_M00174 TRANSFAC + 48897521 48897531 4.0E-06 GATGACTCAGC 11 V_AP1_Q6_M00174 TRANSFAC - 48900917 48900927 1.0E-05 GATGACTCACA 11 V_BACH1_01_M00495 TRANSFAC + 48900915 48900929 5.0E-06 GCTGTGAGTCATCCC 15 V_HELIOSA_02_M01004 TRANSFAC + 48898387 48898397 9.0E-06 TTTAGGAATAA 11 V_OCT1_02_M00136 TRANSFAC - 48899327 48899341 3.0E-06 ATGCATATTCATCCA 15 V_OCT1_02_M00136 TRANSFAC + 48899330 48899344 0.0E+00 ATGAATATGCATCCT 15 V_FKLF_Q5_M01837 TRANSFAC + 48897360 48897369 5.0E-06 GGGGTGGGCG 10 V_SREBP1_01_M00220 TRANSFAC - 48897369 48897379 4.0E-06 TATCACCTGAC 11 V_ARID5A_03_M02736 TRANSFAC + 48901426 48901439 3.0E-06 CCAATATTTGTAAT 14 V_AP1_Q6_01_M00925 TRANSFAC + 48897522 48897530 7.0E-06 ATGACTCAG 9 V_MAZ_Q6_01_M02023 TRANSFAC - 48897490 48897503 0.0E+00 AGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC + 48897925 48897938 1.0E-05 AGGGGAGAGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 48899406 48899419 5.0E-06 TGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 48901001 48901014 3.0E-06 GAGGGAGGAGGGGG 14 V_JUNDM2_04_M02876 TRANSFAC - 48900915 48900930 3.0E-06 GGGGATGACTCACAGC 16 V_REST_01_M01256 TRANSFAC - 48899711 48899732 1.0E-06 TCTTGAATCTGTCCATAGAGCT 22 V_OCT1_04_M00138 TRANSFAC - 48899327 48899349 1.0E-06 ATTGAAGGATGCATATTCATCCA 23 V_SP1SP3_Q4_M01219 TRANSFAC + 48900849 48900859 5.0E-06 CCGCCTCCTCC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 48901001 48901011 1.0E-05 CCCCCTCCTCC 11 V_TEL2_Q6_M00678 TRANSFAC - 48901038 48901047 4.0E-06 TCACTTCCTG 10 V_TCF7_03_M02817 TRANSFAC + 48899760 48899776 7.0E-06 AGAAGATAAAAAGAAAA 17 V_AP1_C_M00199 TRANSFAC + 48897522 48897530 6.0E-06 ATGACTCAG 9 V_KLF7_03_M02773 TRANSFAC + 48901197 48901212 9.0E-06 CAGACCACGCCCTCAG 16 V_KLF7_03_M02773 TRANSFAC + 48901246 48901261 4.0E-06 TGAACCACGCCTCTAT 16 V_CETS1P54_01_M00032 TRANSFAC + 48901037 48901046 9.0E-06 ACAGGAAGTG 10 V_MAFK_Q3_M02022 TRANSFAC + 48897523 48897533 0.0E+00 TGACTCAGCAC 11 V_AP1_01_M00517 TRANSFAC + 48897520 48897532 2.0E-06 CGATGACTCAGCA 13 V_AP1_01_M00517 TRANSFAC + 48900916 48900928 9.0E-06 CTGTGAGTCATCC 13 V_SP3_Q3_M00665 TRANSFAC - 48899411 48899424 0.0E+00 ATCCTTGGGGAGGG 14 V_OCT4_02_M01124 TRANSFAC - 48897729 48897743 1.0E-06 ATTCATATGCAAGTG 15 V_MZF1_02_M00084 TRANSFAC - 48897486 48897498 6.0E-06 AGGGGAGGGGGAA 13 V_MZF1_02_M00084 TRANSFAC - 48900802 48900814 6.0E-06 TTGTTAGGGGGAC 13 V_MZF1_02_M00084 TRANSFAC - 48900999 48901011 2.0E-06 GGAGGAGGGGGAA 13 V_ISGF4G_04_M02875 TRANSFAC + 48898376 48898389 4.0E-06 GGAAAACAGAATTT 14 V_MAF_Q6_01_M00983 TRANSFAC - 48897522 48897532 0.0E+00 TGCTGAGTCAT 11 V_ELF1_Q6_M00746 TRANSFAC + 48899482 48899493 1.0E-05 GGAAGAGGAAGC 12 V_AP1_Q4_01_M00926 TRANSFAC - 48897522 48897529 1.0E-05 TGAGTCAT 8 V_AP1_Q4_01_M00926 TRANSFAC + 48900919 48900926 1.0E-05 TGAGTCAT 8 V_MTF1_06_M02882 TRANSFAC + 48899758 48899771 5.0E-06 AAAGAAGATAAAAA 14 V_GABPBETA_Q3_M01876 TRANSFAC + 48901037 48901047 1.0E-06 ACAGGAAGTGA 11 V_TCFE2A_03_M02823 TRANSFAC + 48899933 48899949 6.0E-06 CTTAACAGGTGTGGGAA 17 V_SP4_04_M02914 TRANSFAC - 48897673 48897687 8.0E-06 ATAGGGCGTGGCCTG 15 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 48897589 48897597 8.0E-06 GAGGGTGGG 9 V_AIRE_01_M00999 TRANSFAC + 48901225 48901250 5.0E-06 ATAGGCGAGGGTTGATTTGGTTGAAC 26 V_TCF7_04_M02921 TRANSFAC - 48901429 48901443 1.0E-06 AGATATTACAAATAT 15 V_GATA3_01_M00077 TRANSFAC - 48897682 48897690 4.0E-06 GAGATAGGG 9 V_DMRT7_01_M01151 TRANSFAC - 48898351 48898364 0.0E+00 TTGTTACAGTGTGG 14 V_ZFP206_01_M01742 TRANSFAC - 48901345 48901355 1.0E-06 TGCGCAGGCGC 11 V_FRA1_Q5_M01267 TRANSFAC - 48897522 48897529 1.0E-05 TGAGTCAT 8 V_FRA1_Q5_M01267 TRANSFAC + 48900919 48900926 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 48900979 48900990 1.0E-06 GGGGGAGGAGGG 12 V_FPM315_01_M01587 TRANSFAC - 48901003 48901014 0.0E+00 GAGGGAGGAGGG 12 V_FPM315_01_M01587 TRANSFAC - 48901010 48901021 9.0E-06 CTGGGAGGAGGG 12 V_NRF2_Q4_M00821 TRANSFAC - 48897521 48897533 1.0E-06 GTGCTGAGTCATC 13 V_NRSF_01_M00256 TRANSFAC + 48899708 48899728 8.0E-06 TCCAGCTCTATGGACAGATTC 21 V_REST_02_M02256 TRANSFAC + 48899708 48899728 1.0E-06 TCCAGCTCTATGGACAGATTC 21 V_ETS1_B_M00339 TRANSFAC + 48901037 48901051 1.0E-05 ACAGGAAGTGACCGC 15 V_ZFP281_01_M01597 TRANSFAC - 48898343 48898353 9.0E-06 TGGGGGTTGGG 11 V_ZFP281_01_M01597 TRANSFAC - 48900826 48900836 2.0E-06 GGGGGGAGGGG 11 V_CEBPB_Q6_M01896 TRANSFAC - 48897457 48897466 7.0E-06 TTGTGAAATC 10 V_SOX2_01_M02246 TRANSFAC - 48897731 48897745 5.0E-06 CCATTCATATGCAAG 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 48897472 48897489 0.0E+00 GGAAGAGGGGCAGGAAGA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 48899424 48899441 3.0E-06 GAGAGGAAGGAAGACAGA 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 48899428 48899445 3.0E-06 TGAGGAGAGGAAGGAAGA 18 V_VMAF_01_M00035 TRANSFAC + 48897517 48897535 1.0E-06 GGCCGATGACTCAGCACAT 19 V_NFE2_Q6_M02104 TRANSFAC + 48897521 48897536 1.0E-06 GATGACTCAGCACATT 16 V_SATB1_01_M01232 TRANSFAC + 48901430 48901441 2.0E-06 TATTTGTAATAT 12 V_NFE2_01_M00037 TRANSFAC - 48897522 48897532 0.0E+00 TGCTGAGTCAT 11 V_NFE2L2_01_M02263 TRANSFAC + 48897522 48897532 0.0E+00 ATGACTCAGCA 11 V_CEBP_Q2_01_M00912 TRANSFAC + 48897458 48897469 8.0E-06 ATTTCACAATAC 12 V_CMAF_01_M01070 TRANSFAC - 48897519 48897537 4.0E-06 AAATGTGCTGAGTCATCGG 19 V_TCF11MAFG_01_M00284 TRANSFAC + 48897517 48897538 7.0E-06 GGCCGATGACTCAGCACATTTA 22 V_SOX5_04_M02910 TRANSFAC + 48898379 48898393 3.0E-06 AAACAGAATTTAGGA 15 V_OTX1_01_M01366 TRANSFAC + 48900004 48900020 9.0E-06 GGAAAGGATTATTCTGG 17 V_PAX4_04_M00380 TRANSFAC + 48898322 48898351 2.0E-06 GAATAATAAGAACGCCTGCATCCCAACCCC 30 V_SMAD1_01_M01590 TRANSFAC + 48899767 48899778 5.0E-06 AAAAAGAAAAGG 12 V_DMRT5_01_M01150 TRANSFAC - 48898352 48898366 4.0E-06 GGTTGTTACAGTGTG 15 V_OCT4_01_M01125 TRANSFAC - 48897730 48897744 1.0E-06 CATTCATATGCAAGT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.