Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TCF4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 6925 chr18 + 53298188 - 53308188 0 V_TCF4_Q5_01_M02033 TCF4_bHLH_full_dimeric_10_1 V_TAL1BETAITF2_01_M00070 V_TCF4_Q5_M00671 V_TCF4_01_M01705 Transcription Factor Binding Sites   Download all TFBS in the TCF4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 53300323 53300338 3.0E-06 ATAAATACTTAATGTT 16 TBX20_TBX_full_monomeric_11_1 SELEX + 53301638 53301648 6.0E-06 TAGTTGTGAAA 11 SOX10_HMG_full_dimeric_16_1 SELEX + 53300320 53300335 3.0E-06 AACAACATTAAGTATT 16 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 53300313 53300329 1.0E-05 GGCTTAAAACAACATTA 17 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 53300324 53300340 4.0E-06 ACATTAAGTATTTATTA 17 SOX9_HMG_full_dimeric_16_1 SELEX + 53300320 53300335 1.0E-06 AACAACATTAAGTATT 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 53301745 53301761 9.0E-06 TTCAAAAAGAAAAAACA 17 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 53301890 53301901 0.0E+00 TGATTGCAATTT 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 53301890 53301901 0.0E+00 AAATTGCAATCA 12 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 53300446 53300457 3.0E-06 AACTTGCTGACT 12 PDX1_homeodomain_DBD_monomeric_8_1 SELEX - 53302032 53302039 5.0E-06 GTAATTAA 8 POU1F1_POU_DBD_monomeric_14_1 SELEX + 53302026 53302039 4.0E-06 AAGATGTTAATTAC 14 SPIB_ETS_DBD_monomeric_14_1 SELEX + 53302317 53302330 6.0E-06 AGAAAGAGGAACCA 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 53300325 53300340 1.0E-05 TAATAAATACTTAATG 16 TEAD1_TEA_full_monomeric_10_1 SELEX - 53300368 53300377 3.0E-06 CACATTCCAA 10 POU4F3_POU_DBD_monomeric_16_1 SELEX - 53300323 53300338 2.0E-06 ATAAATACTTAATGTT 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 53300325 53300340 1.0E-05 TAATAAATACTTAATG 16 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 53301928 53301937 5.0E-06 GTCATAAATA 10 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX - 53302032 53302039 5.0E-06 GTAATTAA 8 POU3F3_POU_DBD_monomeric_13_1 SELEX + 53302026 53302038 2.0E-06 AAGATGTTAATTA 13 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 53301748 53301761 6.0E-06 AAAAAGAAAAAACA 14 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX - 53302031 53302040 1.0E-05 CGTAATTAAC 10 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 53301928 53301938 7.0E-06 GGTCATAAATA 11 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 53301933 53301942 5.0E-06 ACAAGGTCAT 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX + 53302032 53302039 9.0E-06 TTAATTAC 8 SOX7_HMG_full_dimeric_16_1 SELEX + 53300320 53300335 1.0E-06 AACAACATTAAGTATT 16 NRL_bZIP_DBD_monomeric_11_1 SELEX - 53300447 53300457 8.0E-06 AACTTGCTGAC 11 POU1F1_POU_DBD_monomeric_17_1 SELEX - 53300325 53300341 1.0E-06 ATAATAAATACTTAATG 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 53300327 53300341 9.0E-06 TTAAGTATTTATTAT 15 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 53300327 53300341 7.0E-06 ATAATAAATACTTAA 15 Foxd3_MA0041.1 JASPAR - 53300318 53300329 3.0E-06 TAATGTTGTTTT 12 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 53300328 53300340 6.0E-06 TAAGTATTTATTA 13 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 53300328 53300340 5.0E-06 TAATAAATACTTA 13 TEAD3_TEA_DBD_monomeric_8_1 SELEX - 53300369 53300376 1.0E-05 ACATTCCA 8 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 53301933 53301943 8.0E-06 CACAAGGTCAT 11 Evi1_MA0029.1 JASPAR - 53301899 53301912 2.0E-06 AATATAGGATAAAA 14 FEV_MA0156.1 JASPAR + 53301999 53302006 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR - 53301737 53301751 2.0E-06 TTTTGAAATGGAAAG 15 VAX2_homeodomain_DBD_monomeric_8_1 SELEX + 53302032 53302039 5.0E-06 TTAATTAC 8 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 53301884 53301893 8.0E-06 GTCACATGAT 10 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 53301932 53301942 3.0E-06 ACAAGGTCATA 11 MEOX1_homeodomain_full_monomeric_10_1 SELEX - 53302031 53302040 7.0E-06 CGTAATTAAC 10 LHX6_homeodomain_full_dimeric_12_1 SELEX + 53301890 53301901 2.0E-06 TGATTGCAATTT 12 LHX6_homeodomain_full_dimeric_12_1 SELEX - 53301890 53301901 2.0E-06 AAATTGCAATCA 12 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 53301928 53301937 8.0E-06 GTCATAAATA 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 53300368 53300377 4.0E-06 CACATTCCAA 10 SPI1_ETS_full_monomeric_14_1 SELEX + 53302317 53302330 6.0E-06 AGAAAGAGGAACCA 14 POU3F2_POU_DBD_monomeric_12_1 SELEX + 53302027 53302038 9.0E-06 AGATGTTAATTA 12 POU4F1_POU_DBD_monomeric_14_1 SELEX - 53300325 53300338 1.0E-06 ATAAATACTTAATG 14 HNF1A_MA0046.1 JASPAR - 53300330 53300343 8.0E-06 GGATAATAAATACT 14 Meox2_homeodomain_DBD_monomeric_8_1 SELEX + 53302032 53302039 9.0E-06 TTAATTAC 8 V_MEQ_01_M02049 TRANSFAC + 53302247 53302255 4.0E-06 AAAACACAT 9 V_CEBPG_Q6_M00622 TRANSFAC + 53301740 53301752 1.0E-06 TCCATTTCAAAAA 13 V_HNF3B_01_M00131 TRANSFAC - 53300317 53300331 6.0E-06 CTTAATGTTGTTTTA 15 V_HNF3B_01_M00131 TRANSFAC + 53300327 53300341 7.0E-06 TTAAGTATTTATTAT 15 V_SPI1_01_M01203 TRANSFAC + 53302317 53302333 4.0E-06 AGAAAGAGGAACCATGG 17 V_CDX2_Q5_01_M01659 TRANSFAC - 53301927 53301937 3.0E-06 GTCATAAATAC 11 V_CDX2_Q5_01_M01659 TRANSFAC + 53302283 53302293 7.0E-06 TTTATAAATGT 11 V_POU3F3_01_M03090 TRANSFAC - 53302160 53302176 1.0E-06 AATTTCTGCATAAAACA 17 V_AR_02_M00953 TRANSFAC + 53300392 53300418 7.0E-06 TTCTGGCTTACGGTCTGTTCTGAGGTT 27 V_MAFK_03_M02776 TRANSFAC - 53300445 53300459 3.0E-06 GGAACTTGCTGACTT 15 V_HMGIY_Q3_M01010 TRANSFAC - 53300288 53300302 7.0E-06 AGGTTAATTTCTTAT 15 V_FOXD3_01_M00130 TRANSFAC - 53300318 53300329 6.0E-06 TAATGTTGTTTT 12 V_BCL6_01_M01183 TRANSFAC - 53302106 53302121 9.0E-06 TTTTCAGGATCATTTT 16 V_MAFB_05_M02775 TRANSFAC - 53300442 53300458 3.0E-06 GAACTTGCTGACTTGCA 17 V_POU5F1_02_M02245 TRANSFAC - 53301737 53301751 2.0E-06 TTTTGAAATGGAAAG 15 V_IK_Q5_M01169 TRANSFAC + 53302495 53302504 3.0E-06 TTTGGGAGGC 10 V_AR_Q6_01_M01996 TRANSFAC + 53301725 53301739 6.0E-06 AAAGTTTATGTTCTT 15 V_EOMES_03_M02747 TRANSFAC + 53301635 53301651 6.0E-06 TTTTAGTTGTGAAAACT 17 V_OCTAMER_01_M01324 TRANSFAC - 53302160 53302176 1.0E-06 AATTTCTGCATAAAACA 17 V_ISL2_01_M01328 TRANSFAC - 53300324 53300339 6.0E-06 AATAAATACTTAATGT 16 V_HNF4ALPHA_Q6_M00638 TRANSFAC - 53301721 53301733 1.0E-06 ATAAACTTTGAAT 13 V_HNF4_Q6_M00967 TRANSFAC + 53302061 53302069 2.0E-06 AAAGTCCAA 9 V_NKX25_Q6_M02108 TRANSFAC + 53302517 53302527 2.0E-06 ATCACTTGAAG 11 V_SOX11_04_M02899 TRANSFAC + 53302002 53302015 0.0E+00 GAAATTGTTAGGAT 14 V_STAT6_01_M00494 TRANSFAC - 53302078 53302085 7.0E-06 TATTTCCA 8 V_HOXC6_01_M01406 TRANSFAC - 53302027 53302043 4.0E-06 CTACGTAATTAACATCT 17 V_HOXC6_01_M01406 TRANSFAC + 53302028 53302044 1.0E-06 GATGTTAATTACGTAGA 17 V_PU1_Q4_M01172 TRANSFAC - 53302093 53302111 9.0E-06 CATTTTTGGTTCTTCCTTC 19 V_PU1_Q4_M01172 TRANSFAC + 53302173 53302191 9.0E-06 AATTATGAGTTCCTTTTTA 19 V_PU1_Q4_M01172 TRANSFAC - 53302318 53302336 7.0E-06 AATCCATGGTTCCTCTTTC 19 V_HOXD13_01_M01404 TRANSFAC - 53302278 53302293 6.0E-06 ACATTTATAAAACCAC 16 V_LYF1_01_M00141 TRANSFAC + 53302495 53302503 9.0E-06 TTTGGGAGG 9 V_CDX_Q5_M00991 TRANSFAC - 53300334 53300351 8.0E-06 AACTGTGAGGATAATAAA 18 V_CDX_Q5_M00991 TRANSFAC - 53301907 53301924 3.0E-06 CATTGTCAGTTTAATATA 18 V_LDSPOLYA_B_M00317 TRANSFAC - 53302241 53302256 8.0E-06 CATGTGTTTTTTCTCT 16 V_HOXC13_01_M01317 TRANSFAC - 53301926 53301941 5.0E-06 CAAGGTCATAAATACA 16 V_NKX62_Q2_M00489 TRANSFAC - 53300330 53300341 1.0E-06 ATAATAAATACT 12 V_CDP_04_M01344 TRANSFAC - 53300332 53300346 5.0E-06 TGAGGATAATAAATA 15 V_ETS_Q4_M00771 TRANSFAC - 53301999 53302010 9.0E-06 AACAATTTCCTG 12 V_PITX1_Q6_M01826 TRANSFAC - 53300305 53300315 8.0E-06 GCCACTAAGCT 11 V_ELF4_04_M02850 TRANSFAC + 53301744 53301760 6.0E-06 TTTCAAAAAGAAAAAAC 17 V_HELIOSA_02_M01004 TRANSFAC - 53301900 53301910 7.0E-06 TATAGGATAAA 11 V_HOXA6_01_M01392 TRANSFAC + 53302029 53302044 5.0E-06 ATGTTAATTACGTAGA 16 V_PR_Q2_M00960 TRANSFAC - 53301732 53301741 0.0E+00 GAAAGAACAT 10 V_ZFP105_03_M02827 TRANSFAC + 53300316 53300330 2.0E-06 TTAAAACAACATTAA 15 V_BEL1_B_M00312 TRANSFAC - 53300469 53300496 0.0E+00 TAGAAGCTGATACTGCAGGCTTGGTCAA 28 V_HNF1_Q6_M00790 TRANSFAC - 53300285 53300302 4.0E-06 AGGTTAATTTCTTATACA 18 V_SOX8_04_M02912 TRANSFAC - 53302280 53302293 7.0E-06 ACATTTATAAAACC 14 V_HOXA3_02_M01337 TRANSFAC - 53302031 53302044 1.0E-05 TCTACGTAATTAAC 14 V_HOXD12_01_M01380 TRANSFAC - 53301925 53301941 4.0E-06 CAAGGTCATAAATACAC 17 V_FOXK1_04_M02856 TRANSFAC + 53300315 53300329 8.0E-06 CTTAAAACAACATTA 15 V_HOXB6_01_M01460 TRANSFAC - 53302029 53302044 5.0E-06 TCTACGTAATTAACAT 16 V_CDX2_01_M01449 TRANSFAC - 53300330 53300345 8.0E-06 GAGGATAATAAATACT 16 V_CDX2_01_M01449 TRANSFAC - 53301926 53301941 1.0E-05 CAAGGTCATAAATACA 16 V_EVI1_01_M00078 TRANSFAC + 53302402 53302417 0.0E+00 AGATTAGACAAGAGTC 16 V_HOXC11_01_M01329 TRANSFAC - 53301926 53301941 3.0E-06 CAAGGTCATAAATACA 16 V_HOXD11_01_M01434 TRANSFAC - 53301925 53301941 3.0E-06 CAAGGTCATAAATACAC 17 V_CUX1_04_M02959 TRANSFAC - 53300332 53300346 5.0E-06 TGAGGATAATAAATA 15 V_JUNDM2_04_M02876 TRANSFAC + 53301876 53301891 3.0E-06 AGTTGTGAGTCACATG 16 V_YY1_Q6_02_M01035 TRANSFAC - 53302118 53302128 2.0E-06 GCTGCCATTTT 11 V_CDX1_01_M01373 TRANSFAC - 53301926 53301941 3.0E-06 CAAGGTCATAAATACA 16 V_OCT1_04_M00138 TRANSFAC + 53302158 53302180 3.0E-06 GCTGTTTTATGCAGAAATTATGA 23 V_REX1_03_M01744 TRANSFAC + 53302118 53302129 7.0E-06 AAAATGGCAGCT 12 V_OCT1_08_M01354 TRANSFAC + 53302027 53302042 4.0E-06 AGATGTTAATTACGTA 16 V_GR_01_M00955 TRANSFAC + 53300392 53300418 5.0E-06 TTCTGGCTTACGGTCTGTTCTGAGGTT 27 V_HOXC12_01_M01437 TRANSFAC - 53301925 53301941 1.0E-06 CAAGGTCATAAATACAC 17 V_MEF2_04_M00233 TRANSFAC + 53300308 53300329 8.0E-06 TTAGTGGCTTAAAACAACATTA 22 V_SPIB_01_M01204 TRANSFAC + 53302317 53302333 6.0E-06 AGAAAGAGGAACCATGG 17 V_HFH1_01_M00129 TRANSFAC + 53301724 53301735 6.0E-06 CAAAGTTTATGT 12 V_MEF2_Q6_01_M00941 TRANSFAC + 53301904 53301915 5.0E-06 TCCTATATTAAA 12 V_NKX3A_01_M00451 TRANSFAC + 53300325 53300336 1.0E-06 CATTAAGTATTT 12 V_NCX_02_M01420 TRANSFAC + 53300328 53300344 1.0E-05 TAAGTATTTATTATCCT 17 V_NCX_02_M01420 TRANSFAC - 53302026 53302042 8.0E-06 TACGTAATTAACATCTT 17 V_HOXA11_01_M01378 TRANSFAC - 53301926 53301941 3.0E-06 CAAGGTCATAAATACA 16 V_OCT4_02_M01124 TRANSFAC - 53301742 53301756 8.0E-06 TTTCTTTTTGAAATG 15 V_BLIMP1_Q6_M01066 TRANSFAC + 53301690 53301705 7.0E-06 GTAGCAGGGAATTTAA 16 V_CETS1P54_03_M01078 TRANSFAC + 53301995 53302010 4.0E-06 TAGACAGGAAATTGTT 16 V_ZFP105_04_M02931 TRANSFAC + 53301981 53301997 0.0E+00 CTGATTCAATAATCTAG 17 V_S8_01_M00099 TRANSFAC - 53302029 53302044 5.0E-06 TCTACGTAATTAACAT 16 V_MTF1_06_M02882 TRANSFAC + 53301747 53301760 4.0E-06 CAAAAAGAAAAAAC 14 V_HNF1_01_M00132 TRANSFAC - 53300287 53300301 7.0E-06 GGTTAATTTCTTATA 15 V_TFEB_01_M01768 TRANSFAC - 53301884 53301893 7.0E-06 ATCATGTGAC 10 V_FOXL1_02_M02857 TRANSFAC - 53301658 53301673 5.0E-06 TTTCTAAAACAACATG 16 V_FOXL1_02_M02857 TRANSFAC + 53301699 53301714 1.0E-05 AATTTAAAACCAAATC 16 V_NKX3A_02_M01383 TRANSFAC - 53300324 53300340 6.0E-06 TAATAAATACTTAATGT 17 V_ERR1_Q2_M00511 TRANSFAC - 53301932 53301945 1.0E-06 ACCACAAGGTCATA 14 V_TCF7_04_M02921 TRANSFAC + 53300284 53300298 3.0E-06 CTGTATAAGAAATTA 15 V_GATA6_01_M00462 TRANSFAC + 53302400 53302409 9.0E-06 AAAGATTAGA 10 V_SMAD3_03_M02794 TRANSFAC + 53301989 53302005 1.0E-06 ATAATCTAGACAGGAAA 17 V_NKX22_01_M00485 TRANSFAC + 53300327 53300336 2.0E-06 TTAAGTATTT 10 V_ESRRA_03_M02748 TRANSFAC - 53301929 53301945 5.0E-06 ACCACAAGGTCATAAAT 17 V_ETS1_B_M00339 TRANSFAC + 53301998 53302012 5.0E-06 ACAGGAAATTGTTAG 15 V_CEBPB_Q6_M01896 TRANSFAC + 53301866 53301875 5.0E-06 TTGAGCAATA 10 V_SRF_06_M02916 TRANSFAC + 53301746 53301762 6.0E-06 TCAAAAAGAAAAAACAT 17 V_SRF_06_M02916 TRANSFAC + 53301747 53301763 9.0E-06 CAAAAAGAAAAAACATC 17 V_SOX18_04_M02905 TRANSFAC + 53302195 53302210 9.0E-06 ATATTGAATTTGAGAT 16 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 53302277 53302284 1.0E-05 TGTGGTTT 8 V_HOXD8_01_M01432 TRANSFAC - 53300321 53300337 6.0E-06 TAAATACTTAATGTTGT 17 V_HOXD8_01_M01432 TRANSFAC - 53302026 53302042 2.0E-06 TACGTAATTAACATCTT 17 V_PR_02_M00957 TRANSFAC + 53300392 53300418 1.0E-05 TTCTGGCTTACGGTCTGTTCTGAGGTT 27 V_HOXC10_01_M01361 TRANSFAC - 53301926 53301941 3.0E-06 CAAGGTCATAAATACA 16 V_PAX1_B_M00326 TRANSFAC + 53302179 53302196 1.0E-05 GAGTTCCTTTTTAGATAT 18 V_MEF2A_05_M01301 TRANSFAC + 53301904 53301915 7.0E-06 TCCTATATTAAA 12 V_TFE_Q6_M01029 TRANSFAC - 53301885 53301892 1.0E-05 TCATGTGA 8 V_HOXA10_01_M01464 TRANSFAC - 53302027 53302042 5.0E-06 TACGTAATTAACATCT 16 V_HNF4_01_M00134 TRANSFAC + 53301717 53301735 7.0E-06 TCTGATTCAAAGTTTATGT 19 V_MAFK_04_M02880 TRANSFAC - 53301891 53301905 1.0E-06 GATAAAATTGCAATC 15 V_CMAF_01_M01070 TRANSFAC - 53300440 53300458 9.0E-06 GAACTTGCTGACTTGCAGG 19 V_SOX5_07_M02909 TRANSFAC + 53301999 53302015 3.0E-06 CAGGAAATTGTTAGGAT 17 V_ZFP128_04_M02932 TRANSFAC - 53302283 53302296 2.0E-06 TGTACATTTATAAA 14 V_HNF1A_01_M02162 TRANSFAC - 53300330 53300343 8.0E-06 GGATAATAAATACT 14 V_SOX5_04_M02910 TRANSFAC + 53300319 53300333 6.0E-06 AAACAACATTAAGTA 15 V_SOX5_04_M02910 TRANSFAC - 53302029 53302043 1.0E-05 CTACGTAATTAACAT 15 V_PBX1_Q3_M02028 TRANSFAC - 53302129 53302137 6.0E-06 ATCAATCTA 9 V_FEV_01_M02269 TRANSFAC + 53301999 53302006 1.0E-05 CAGGAAAT 8 V_HOXB5_01_M01319 TRANSFAC + 53302029 53302044 7.0E-06 ATGTTAATTACGTAGA 16 V_SMAD1_01_M01590 TRANSFAC + 53301748 53301759 3.0E-06 AAAAAGAAAAAA 12 V_HOX13_02_M01452 TRANSFAC + 53302029 53302044 5.0E-06 ATGTTAATTACGTAGA 16 V_NF1_Q6_M00193 TRANSFAC + 53300533 53300550 8.0E-06 TGTTGGCAGGAGGCCTCA 18 V_NANOG_02_M01247 TRANSFAC + 53301744 53301763 1.0E-06 TTTCAAAAAGAAAAAACATC 20 V_HOXC9_01_M01416 TRANSFAC - 53301926 53301941 9.0E-06 CAAGGTCATAAATACA 16 V_OCT4_01_M01125 TRANSFAC - 53301737 53301751 2.0E-06 TTTTGAAATGGAAAG 15 V_OCT4_01_M01125 TRANSFAC - 53301743 53301757 9.0E-06 TTTTCTTTTTGAAAT 15 V_HOXC8_01_M01321 TRANSFAC - 53302029 53302044 1.0E-06 TCTACGTAATTAACAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.