Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CNTN2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6900 contactin 2 (axonal) chr1 + 205007339 - 205012839 205012339 Transcription Factor Binding Sites   Download all TFBS in the CNTN2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Zfp652_C2H2_DBD_monomeric_13_1 SELEX - 205014037 205014049 7.0E-06 GAAAGGGGTTAAC 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 205010320 205010336 1.0E-05 CACAATAAGTGAAAACA 17 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX - 205010331 205010341 4.0E-06 GCAGACACAAT 11 NR2F1_MA0017.1 JASPAR - 205010676 205010689 3.0E-06 TGAACCTTGCTCTT 14 TBX1_TBX_DBD_dimeric_19_1 SELEX + 205010257 205010275 8.0E-06 AAGTGAGAAGATGAGACTT 19 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX - 205010331 205010340 8.0E-06 CAGACACAAT 10 NR4A2_nuclearreceptor_full_dimeric_16_1 SELEX + 205012146 205012161 9.0E-06 TGGTCCTTAAATGACA 16 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 205010330 205010341 4.0E-06 GCAGACACAATA 12 FEV_MA0156.1 JASPAR - 205010543 205010550 1.0E-05 CAGGAAAT 8 REST_MA0138.2 JASPAR - 205012135 205012155 5.0E-06 TTAAGGACCAGGGAGCGAGCC 21 REST_MA0138.2 JASPAR + 205014059 205014079 0.0E+00 TGCAGAACCATGGACAGGGCT 21 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 205010314 205010326 4.0E-06 GAAAACAAGAACA 13 V_ELF5_02_M01980 TRANSFAC - 205010542 205010551 3.0E-06 CCAGGAAATA 10 V_ELF5_03_M02057 TRANSFAC - 205010542 205010551 2.0E-06 CCAGGAAATA 10 V_FOXP1_01_M00987 TRANSFAC + 205010313 205010332 5.0E-06 ATGTTCTTGTTTTCACTTAT 20 V_GEN_INI_B_M00315 TRANSFAC - 205012164 205012171 1.0E-05 CCTCATTT 8 V_NRSF_Q4_M01028 TRANSFAC - 205014060 205014078 0.0E+00 GCCCTGTCCATGGTTCTGC 19 V_BCL6_01_M01183 TRANSFAC - 205010494 205010509 9.0E-06 TTGCAAGGATTGCTTT 16 V_ESE1_01_M01977 TRANSFAC - 205010542 205010551 3.0E-06 CCAGGAAATA 10 V_EBOX_Q6_01_M01034 TRANSFAC + 205011289 205011298 2.0E-06 CCACGTGACC 10 V_IRF_Q6_01_M00972 TRANSFAC - 205010322 205010332 6.0E-06 ATAAGTGAAAA 11 V_FOXO3A_Q1_M01137 TRANSFAC - 205010316 205010327 2.0E-06 TGAAAACAAGAA 12 V_COUPTF_Q6_M01036 TRANSFAC - 205010672 205010694 8.0E-06 TGAGGTGAACCTTGCTCTTTGGC 23 V_BRN2_01_M00145 TRANSFAC - 205012111 205012126 6.0E-06 GTCTTCCATAATGCAT 16 V_GEN_INI3_B_M00314 TRANSFAC - 205012164 205012171 1.0E-05 CCTCATTT 8 V_FKLF_Q5_M01837 TRANSFAC + 205012199 205012208 2.0E-06 GGGGTGGGAG 10 V_FOXO1_02_M00474 TRANSFAC + 205010316 205010329 4.0E-06 TTCTTGTTTTCACT 14 V_COUP_01_M00158 TRANSFAC - 205010676 205010689 3.0E-06 TGAACCTTGCTCTT 14 V_IRF3_Q3_M01279 TRANSFAC + 205010319 205010331 4.0E-06 TTGTTTTCACTTA 13 V_EVI1_01_M00078 TRANSFAC + 205010260 205010275 3.0E-06 TGAGAAGATGAGACTT 16 V_MAZ_Q6_01_M02023 TRANSFAC + 205012198 205012211 8.0E-06 TGGGGTGGGAGGGG 14 V_IRF_Q6_M00772 TRANSFAC + 205010318 205010332 7.0E-06 CTTGTTTTCACTTAT 15 V_EHF_02_M01974 TRANSFAC - 205010542 205010551 3.0E-06 CCAGGAAATA 10 V_REST_01_M01256 TRANSFAC - 205014062 205014083 0.0E+00 CAAAAGCCCTGTCCATGGTTCT 22 V_HNF4A_02_M02868 TRANSFAC + 205010339 205010354 9.0E-06 TGCCAGAGTCCACATG 16 V_EHF_03_M02052 TRANSFAC - 205010542 205010551 7.0E-06 CCAGGAAATA 10 V_ALPHACP1_01_M00687 TRANSFAC + 205012160 205012170 1.0E-05 CAGCAAATGAG 11 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 205012181 205012189 8.0E-06 GAGGGTGGG 9 V_HNF4_Q6_01_M01031 TRANSFAC + 205010677 205010690 6.0E-06 AGAGCAAGGTTCAC 14 V_GEN_INI2_B_M00313 TRANSFAC - 205012164 205012171 1.0E-05 CCTCATTT 8 V_NRSF_01_M00256 TRANSFAC + 205014059 205014079 3.0E-06 TGCAGAACCATGGACAGGGCT 21 V_FOXO3_01_M00477 TRANSFAC + 205010316 205010329 5.0E-06 TTCTTGTTTTCACT 14 V_ASCL2_04_M02841 TRANSFAC + 205010284 205010299 3.0E-06 GTCTCCCCATCCAAGT 16 V_REST_02_M02256 TRANSFAC - 205012135 205012155 5.0E-06 TTAAGGACCAGGGAGCGAGCC 21 V_REST_02_M02256 TRANSFAC + 205014059 205014079 0.0E+00 TGCAGAACCATGGACAGGGCT 21 V_ESE1_02_M02055 TRANSFAC - 205010542 205010551 3.0E-06 CCAGGAAATA 10 V_IRF1_Q6_01_M01881 TRANSFAC + 205010320 205010333 5.0E-06 TGTTTTCACTTATT 14 V_TBX22_01_M01195 TRANSFAC - 205010265 205010283 9.0E-06 AGTTCCCAAAGTCTCATCT 19 V_ZFP281_04_M02831 TRANSFAC + 205013216 205013230 1.0E-05 TCCCTCCCCCCCATC 15 V_FEV_01_M02269 TRANSFAC - 205010543 205010550 1.0E-05 CAGGAAAT 8 V_ESE1_Q3_M01214 TRANSFAC - 205010542 205010551 3.0E-06 CCAGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.