Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TACR2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 6865 tachykinin receptor 2 chr10 - 71176174 - 71181674 71176674 Transcription Factor Binding Sites   Download all TFBS in the TACR2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 71173188 71173206 7.0E-06 CGGCCACTTGGGGTCGGTA 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 71172995 71173007 2.0E-06 AAAAACAATAACA 13 RARB_nuclearreceptor_full_dimeric_16_1 SELEX - 71178025 71178040 6.0E-06 TAGGGTCCAAAGTCCA 16 SRF_MADS_DBD_dimeric_12_1 SELEX + 71173260 71173271 1.0E-06 CCCATATATGGA 12 SRF_MADS_DBD_dimeric_12_1 SELEX - 71173260 71173271 1.0E-06 TCCATATATGGG 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 71173475 71173490 0.0E+00 TGTTGCCATGGCTACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 71173475 71173490 0.0E+00 GGTAGCCATGGCAACA 16 Sox17_HMG_DBD_dimeric_15_1 SELEX + 71181631 71181645 9.0E-06 AACACTGAGAGTGTG 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 71181631 71181645 3.0E-06 CACACTCTCAGTGTT 15 SRF_MA0083.1 JASPAR + 71173259 71173270 2.0E-06 CCCCATATATGG 12 SRF_MA0083.1 JASPAR - 71173261 71173272 4.0E-06 ATCCATATATGG 12 NR2F1_MA0017.1 JASPAR + 71178025 71178038 6.0E-06 TGGACTTTGGACCC 14 TCF7L1_HMG_full_monomeric_12_1 SELEX - 71178056 71178067 0.0E+00 AGAGATCAAAGG 12 LEF1_HMG_DBD_monomeric_15_1 SELEX - 71178053 71178067 0.0E+00 AGAGATCAAAGGCAG 15 Ar_MA0007.1 JASPAR - 71173125 71173146 2.0E-06 CTGAGAACAGCGAGTTCCATCC 22 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 71173475 71173490 0.0E+00 TGTTGCCATGGCTACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 71173475 71173490 0.0E+00 GGTAGCCATGGCAACA 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 71178385 71178395 6.0E-06 GAAAATAAAAA 11 HNF4A_nuclearreceptor_full_dimeric_16_1 SELEX - 71178023 71178038 0.0E+00 GGGTCCAAAGTCCAAA 16 SOX18_HMG_full_dimeric_15_1 SELEX - 71181631 71181645 4.0E-06 CACACTCTCAGTGTT 15 Tcf7_HMG_DBD_monomeric_12_1 SELEX - 71178056 71178067 0.0E+00 AGAGATCAAAGG 12 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 71178385 71178395 4.0E-06 GAAAATAAAAA 11 HNF4A_nuclearreceptor_full_dimeric_15_1 SELEX - 71178024 71178038 0.0E+00 GGGTCCAAAGTCCAA 15 RFX2_RFX_DBD_dimeric_16_1 SELEX + 71173475 71173490 0.0E+00 TGTTGCCATGGCTACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 71173475 71173490 0.0E+00 GGTAGCCATGGCAACA 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 71173475 71173490 0.0E+00 TGTTGCCATGGCTACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 71173475 71173490 0.0E+00 GGTAGCCATGGCAACA 16 Hltf_MA0109.1 JASPAR - 71173263 71173272 1.0E-05 ATCCATATAT 10 ZNF282_C2H2_DBD_monomeric_17_1 SELEX + 71173030 71173046 8.0E-06 CTTTCCCCAAATCCTTT 17 SRF_MADS_full_dimeric_16_1 SELEX + 71173258 71173273 0.0E+00 TCCCCATATATGGATA 16 SRF_MADS_full_dimeric_16_1 SELEX - 71173258 71173273 0.0E+00 TATCCATATATGGGGA 16 HNF4A_MA0114.1 JASPAR - 71178025 71178037 1.0E-06 GGTCCAAAGTCCA 13 Sox11_HMG_DBD_dimeric_15_1 SELEX - 71181631 71181645 7.0E-06 CACACTCTCAGTGTT 15 CPEB1_RRM_full_monomeric_8_1 SELEX - 71178385 71178392 4.0E-06 AATAAAAA 8 REST_MA0138.2 JASPAR - 71178119 71178139 3.0E-06 TTTAGGACCCTGGCCAGATGG 21 Sox1_HMG_DBD_dimeric_15_1 SELEX + 71181631 71181645 8.0E-06 AACACTGAGAGTGTG 15 Sox1_HMG_DBD_dimeric_15_1 SELEX - 71181631 71181645 9.0E-06 CACACTCTCAGTGTT 15 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 71178385 71178397 8.0E-06 GGGAAAATAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 71172995 71173007 4.0E-06 AAAAACAATAACA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 71178383 71178395 6.0E-06 GAAAATAAAAACT 13 AR_nuclearreceptor_full_dimeric_17_1 SELEX - 71173128 71173144 7.0E-06 GAGAACAGCGAGTTCCA 17 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 71172993 71173006 3.0E-06 AGAAAAACAATAAC 14 SOX9_HMG_full_dimeric_17_1 SELEX - 71181630 71181646 7.0E-06 GCACACTCTCAGTGTTT 17 V_RUSH1A_02_M01107 TRANSFAC - 71173263 71173272 1.0E-05 ATCCATATAT 10 V_SRF_Q6_M00186 TRANSFAC + 71173259 71173272 2.0E-06 CCCCATATATGGAT 14 V_SRF_Q6_M00186 TRANSFAC - 71173259 71173272 2.0E-06 ATCCATATATGGGG 14 V_OSR1_03_M02784 TRANSFAC + 71178077 71178092 2.0E-06 GGCAACAGTAGCAGTA 16 V_STAT5A_Q6_M01890 TRANSFAC - 71173363 71173375 6.0E-06 ATTCTTCTGAGAA 13 V_LEF1_04_M02774 TRANSFAC + 71178052 71178068 1.0E-06 TCTGCCTTTGATCTCTG 17 V_AR_02_M00953 TRANSFAC + 71173123 71173149 3.0E-06 TGGGATGGAACTCGCTGTTCTCAGAGA 27 V_SREBP2_Q6_M01177 TRANSFAC - 71178010 71178021 8.0E-06 AGGCCACTCCAG 12 V_STAT_Q6_M00777 TRANSFAC - 71173364 71173376 1.0E-05 CATTCTTCTGAGA 13 V_TCF4_Q5_01_M02033 TRANSFAC - 71178054 71178063 9.0E-06 ATCAAAGGCA 10 V_HOXA13_02_M01297 TRANSFAC - 71178385 71178393 4.0E-06 AAATAAAAA 9 V_AR_Q6_01_M01996 TRANSFAC + 71173130 71173144 2.0E-06 GAACTCGCTGTTCTC 15 V_SOX5_01_M00042 TRANSFAC + 71172996 71173005 9.0E-06 AAAACAATAA 10 V_HNF4_Q6_M00967 TRANSFAC - 71178024 71178032 2.0E-06 AAAGTCCAA 9 V_HNF4A_03_M02220 TRANSFAC - 71178025 71178037 1.0E-06 GGTCCAAAGTCCA 13 V_AR_03_M00956 TRANSFAC + 71173123 71173149 0.0E+00 TGGGATGGAACTCGCTGTTCTCAGAGA 27 V_HMGA2_01_M01300 TRANSFAC + 71178390 71178404 2.0E-06 ATTTTCCCCTTAAAT 15 V_SRF_C_M00215 TRANSFAC - 71173257 71173271 1.0E-06 TCCATATATGGGGAA 15 V_SOX7_03_M02807 TRANSFAC + 71172991 71173012 1.0E-06 CAAGAAAAACAATAACACATTC 22 V_TCF3_04_M02816 TRANSFAC - 71178052 71178068 3.0E-06 CAGAGATCAAAGGCAGA 17 V_PR_01_M00954 TRANSFAC + 71173123 71173149 2.0E-06 TGGGATGGAACTCGCTGTTCTCAGAGA 27 V_ZFP410_03_M02832 TRANSFAC + 71173118 71173134 7.0E-06 GAATCTGGGATGGAACT 17 V_HNF4_01_B_M00411 TRANSFAC - 71178024 71178038 9.0E-06 GGGTCCAAAGTCCAA 15 V_COUP_01_M00158 TRANSFAC + 71178025 71178038 6.0E-06 TGGACTTTGGACCC 14 V_PXRRXR_02_M01153 TRANSFAC + 71178297 71178304 1.0E-05 AGAGTTCA 8 V_FOXK1_04_M02856 TRANSFAC + 71172996 71173010 0.0E+00 AAAACAATAACACAT 15 V_IRF3_Q3_M01279 TRANSFAC + 71178388 71178400 4.0E-06 TTATTTTCCCCTT 13 V_PAX6_Q2_M00979 TRANSFAC + 71173122 71173135 6.0E-06 CTGGGATGGAACTC 14 V_GR_01_M00955 TRANSFAC + 71173123 71173149 4.0E-06 TGGGATGGAACTCGCTGTTCTCAGAGA 27 V_AR_04_M01201 TRANSFAC + 71173129 71173143 3.0E-06 GGAACTCGCTGTTCT 15 V_GRE_C_M00205 TRANSFAC + 71173207 71173222 1.0E-06 GTCTCAATATGTTCTG 16 V_TCF7_03_M02817 TRANSFAC - 71178052 71178068 4.0E-06 CAGAGATCAAAGGCAGA 17 V_HNF4A_Q6_01_M02016 TRANSFAC - 71178022 71178036 1.0E-06 GTCCAAAGTCCAAAC 15 V_SRF_Q5_02_M01007 TRANSFAC + 71173256 71173274 1.0E-06 ATTCCCCATATATGGATAT 19 V_SRF_Q5_02_M01007 TRANSFAC - 71173257 71173275 1.0E-06 GATATCCATATATGGGGAA 19 V_POU6F1_01_M00465 TRANSFAC + 71178397 71178407 7.0E-06 CCTTAAATTAT 11 V_SOX11_03_M02795 TRANSFAC + 71172993 71173009 1.0E-05 AGAAAAACAATAACACA 17 V_SRF_03_M01304 TRANSFAC + 71173259 71173271 9.0E-06 CCCCATATATGGA 13 V_SRF_03_M01304 TRANSFAC - 71173260 71173272 1.0E-06 ATCCATATATGGG 13 V_ISGF4G_04_M02875 TRANSFAC + 71172994 71173007 5.0E-06 GAAAAACAATAACA 14 V_HNF4A_02_M02868 TRANSFAC - 71178021 71178036 0.0E+00 GTCCAAAGTCCAAACA 16 V_GATA4_Q3_M00632 TRANSFAC - 71178054 71178065 6.0E-06 AGATCAAAGGCA 12 V_GR_Q6_02_M01836 TRANSFAC + 71173211 71173223 1.0E-06 CAATATGTTCTGC 13 V_GCNF_01_M00526 TRANSFAC + 71178295 71178312 3.0E-06 GCAGAGTTCAAGTTCCTT 18 V_FAC1_01_M00456 TRANSFAC + 71172998 71173011 4.0E-06 AACAATAACACATT 14 V_HNF4_Q6_01_M01031 TRANSFAC - 71178024 71178037 1.0E-06 GGTCCAAAGTCCAA 14 V_OSR2_03_M02785 TRANSFAC + 71178077 71178092 8.0E-06 GGCAACAGTAGCAGTA 16 V_SRF_01_M00152 TRANSFAC + 71173257 71173274 1.0E-06 TTCCCCATATATGGATAT 18 V_SRF_01_M00152 TRANSFAC - 71173257 71173274 1.0E-06 ATATCCATATATGGGGAA 18 V_REST_02_M02256 TRANSFAC - 71178119 71178139 3.0E-06 TTTAGGACCCTGGCCAGATGG 21 V_SRF_Q5_01_M00922 TRANSFAC - 71173256 71173270 6.0E-06 CCATATATGGGGAAT 15 V_SRF_Q5_01_M00922 TRANSFAC + 71173261 71173275 1.0E-06 CCATATATGGATATC 15 V_SRF_Q4_M00810 TRANSFAC - 71173254 71173271 5.0E-06 TCCATATATGGGGAATGC 18 V_SRF_Q4_M00810 TRANSFAC + 71173260 71173277 0.0E+00 CCCATATATGGATATCGC 18 V_LEF1TCF1_Q4_M00978 TRANSFAC + 71178056 71178066 2.0E-06 CCTTTGATCTC 11 V_SRF_02_M01257 TRANSFAC - 71173255 71173272 3.0E-06 ATCCATATATGGGGAATG 18 V_SRF_02_M01257 TRANSFAC + 71173259 71173276 4.0E-06 CCCCATATATGGATATCG 18 V_SOX8_03_M02808 TRANSFAC - 71172993 71173009 8.0E-06 TGTGTTATTGTTTTTCT 17 V_SOX2_Q6_M01272 TRANSFAC - 71172994 71173009 4.0E-06 TGTGTTATTGTTTTTC 16 V_PR_02_M00957 TRANSFAC + 71173123 71173149 1.0E-06 TGGGATGGAACTCGCTGTTCTCAGAGA 27 V_SOX12_03_M02796 TRANSFAC - 71172992 71173005 3.0E-06 TTATTGTTTTTCTT 14 V_PIT1_Q6_M00802 TRANSFAC - 71178148 71178165 0.0E+00 CATTCTTATTTCTACACA 18 V_HNF4_01_M00134 TRANSFAC - 71178022 71178040 6.0E-06 TAGGGTCCAAAGTCCAAAC 19 V_TCF3_05_M02920 TRANSFAC - 71178385 71178399 0.0E+00 AGGGGAAAATAAAAA 15 V_AR_Q2_M00447 TRANSFAC + 71173129 71173143 6.0E-06 GGAACTCGCTGTTCT 15 V_PAX4_04_M00380 TRANSFAC + 71172997 71173026 7.0E-06 AAACAATAACACATTCTCACACTTAAAACC 30 V_SMAD1_01_M01590 TRANSFAC + 71172995 71173006 9.0E-06 AAAAACAATAAC 12 V_RFX1_02_M00281 TRANSFAC + 71173474 71173491 7.0E-06 GTGTTGCCATGGCTACCT 18 V_RFX1_02_M00281 TRANSFAC - 71173474 71173491 0.0E+00 AGGTAGCCATGGCAACAC 18 V_DMRT5_01_M01150 TRANSFAC - 71178078 71178092 1.0E-05 TACTGCTACTGTTGC 15 V_NANOG_02_M01247 TRANSFAC + 71172991 71173010 2.0E-06 CAAGAAAAACAATAACACAT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.